Wall clock time and date at job start Tue Mar 31 2020 14:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00334 * 2 1 4 4 H 1.48499 * 109.47253 * 269.99889 * 3 2 1 5 5 H 1.48500 * 109.46952 * 29.99538 * 3 2 1 6 6 H 1.48497 * 109.47274 * 149.99442 * 3 2 1 7 7 C 1.38815 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99973 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99692 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.91343 * 23.74950 * 10 9 7 12 12 C 1.53781 * 113.61225 * 155.00127 * 10 9 7 13 13 C 1.53786 * 87.17350 * 139.93836 * 12 10 9 14 14 H 1.09000 * 113.61138 * 220.06261 * 13 12 10 15 15 N 1.46496 * 113.61518 * 89.15486 * 13 12 10 16 16 C 1.34779 * 119.99390 * 154.99856 * 15 13 12 17 17 O 1.21557 * 120.00589 * 359.97438 * 16 15 13 18 18 C 1.47774 * 119.99521 * 180.02562 * 16 15 13 19 19 C 1.39619 * 120.14972 * 0.02562 * 18 16 15 20 20 C 1.38013 * 119.84981 * 179.97438 * 19 18 16 21 21 Cl 1.73602 * 119.92099 * 180.02562 * 20 19 18 22 22 C 1.38522 * 120.15695 * 359.97438 * 20 19 18 23 23 C 1.38249 * 120.30807 * 0.02562 * 22 20 19 24 24 C 1.38161 * 120.13974 * 359.73919 * 23 22 20 25 25 Cl 1.73605 * 120.07912 * 180.25268 * 24 23 22 26 26 C 1.53782 * 113.61191 * 252.49800 * 10 9 7 27 27 H 0.97003 * 119.99921 * 0.02562 * 1 2 3 28 28 H 0.96997 * 119.99530 * 0.02562 * 9 7 2 29 29 H 1.09002 * 113.61445 * 254.52836 * 12 10 9 30 30 H 1.09002 * 113.61408 * 25.34566 * 12 10 9 31 31 H 0.97001 * 120.00117 * 335.00621 * 15 13 12 32 32 H 1.07994 * 120.07413 * 359.95588 * 19 18 16 33 33 H 1.08007 * 119.84765 * 180.02562 * 22 20 19 34 34 H 1.08002 * 119.93500 * 180.02562 * 23 22 20 35 35 H 1.08997 * 113.61668 * 334.56642 * 26 10 9 36 36 H 1.08994 * 113.61387 * 105.47377 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 3.0657 -3.5646 0.4067 12 6 1.2596 -4.8285 0.5970 13 6 1.8462 -5.6996 -0.5264 14 1 1.1304 -6.4023 -0.9530 15 7 3.1227 -6.3275 -0.1764 16 6 3.5057 -7.4638 -0.7917 17 8 2.7918 -7.9679 -1.6367 18 6 4.7930 -8.0976 -0.4383 19 6 5.6145 -7.5222 0.5330 20 6 6.8153 -8.1197 0.8586 21 17 7.8380 -7.4062 2.0665 22 6 7.2059 -9.2878 0.2248 23 6 6.3974 -9.8631 -0.7379 24 6 5.1906 -9.2783 -1.0701 25 17 4.1736 -10.0056 -2.2745 26 6 2.0001 -4.4027 -1.3419 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 1.5904 -5.1205 1.5938 30 1 0.1793 -4.6993 0.5305 31 1 3.6921 -5.9256 0.4982 32 1 5.3113 -6.6116 1.0280 33 1 8.1464 -9.7513 0.4838 34 1 6.7077 -10.7741 -1.2280 35 1 1.1222 -4.1578 -1.9398 36 1 2.9286 -4.3510 -1.9104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020973281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:06 Heat of formation + Delta-G solvation = -0.172597 kcal Electronic energy + Delta-G solvation = -22248.587910 eV Core-core repulsion = 18591.930258 eV Total energy + Delta-G solvation = -3656.657651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58917 -40.23022 -38.99927 -37.74330 -37.20219 -35.79050 -34.35338 -32.57551 -31.60381 -31.51564 -26.67548 -26.49535 -25.41063 -24.11027 -23.46522 -21.98789 -20.42317 -19.50797 -18.98919 -17.77670 -17.22634 -16.94975 -16.50807 -16.32993 -16.20629 -15.74748 -15.52084 -15.37590 -14.83321 -14.68919 -14.20330 -13.60397 -13.47095 -13.37252 -13.32536 -13.31043 -13.05032 -12.81723 -12.60341 -12.30191 -12.14915 -12.00790 -11.99919 -11.84005 -11.73235 -11.20064 -10.84121 -10.69826 -10.39360 -10.04950 -9.72850 -8.98462 -7.94329 -5.22724 -0.54176 -0.15349 0.89350 1.12397 1.48474 1.49783 1.57952 1.63511 1.99055 2.46066 2.57123 3.37163 3.38771 3.48295 3.70953 3.83270 3.89666 3.94257 3.97940 4.16307 4.32504 4.32983 4.53146 4.56548 4.72035 4.85703 4.90683 4.92055 4.97910 5.13270 5.19955 5.23248 5.32136 5.51253 5.68417 6.27791 6.44650 7.11341 7.34183 8.10827 8.33029 9.28999 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013671 B = 0.002896 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.650656 B = 9666.507306 C =11242.052724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.971 3.029 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.243 4.243 8 H 0.079 0.921 9 N -0.727 5.727 10 C 0.152 3.848 11 H 0.083 0.917 12 C -0.142 4.142 13 C 0.137 3.863 14 H 0.095 0.905 15 N -0.692 5.692 16 C 0.552 3.448 17 O -0.547 6.547 18 C -0.130 4.130 19 C -0.065 4.065 20 C -0.046 4.046 21 Cl -0.050 7.050 22 C -0.061 4.061 23 C -0.100 4.100 24 C 0.000 4.000 25 Cl -0.042 7.042 26 C -0.172 4.172 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.411 0.589 32 H 0.158 0.842 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.070 0.930 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.501 -23.731 2.938 29.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.800 3.200 4 H -0.218 1.218 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.375 4.375 8 H 0.097 0.903 9 N -0.365 5.365 10 C 0.042 3.958 11 H 0.101 0.899 12 C -0.182 4.182 13 C 0.030 3.970 14 H 0.113 0.887 15 N -0.344 5.344 16 C 0.339 3.661 17 O -0.425 6.425 18 C -0.135 4.135 19 C -0.084 4.084 20 C -0.073 4.073 21 Cl -0.021 7.021 22 C -0.080 4.080 23 C -0.119 4.119 24 C -0.028 4.028 25 Cl -0.012 7.012 26 C -0.214 4.214 27 H 0.059 0.941 28 H 0.206 0.794 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.248 0.752 32 H 0.175 0.825 33 H 0.196 0.804 34 H 0.193 0.807 35 H 0.089 0.911 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.122 -23.927 2.368 29.517 hybrid contribution -0.197 1.479 0.034 1.493 sum 16.925 -22.448 2.403 28.216 Atomic orbital electron populations 1.69809 1.06649 1.26044 1.59564 1.25558 0.96336 1.01121 1.03811 0.85180 0.77881 0.79669 0.77291 1.21752 1.22374 1.19095 1.19709 0.91593 0.85327 1.40899 0.90336 1.42596 1.05461 1.01045 1.87352 1.21973 0.95658 0.84028 0.94114 0.89870 1.23681 1.01071 0.95018 0.98411 1.21552 0.85382 0.92981 0.97040 0.88709 1.45504 1.21766 1.25040 1.42093 1.18305 0.85755 0.80685 0.81317 1.90860 1.55068 1.63689 1.32866 1.19623 0.96195 0.96995 1.00652 1.21317 0.92153 0.99996 0.94978 1.20981 0.93434 0.96874 0.95993 1.98420 1.66692 1.83107 1.53862 1.21588 1.00844 0.92545 0.92974 1.21351 0.91003 1.01620 0.97904 1.21381 0.93972 0.93984 0.93438 1.98433 1.67844 1.81380 1.53546 1.24190 1.01258 0.96491 0.99466 0.94061 0.79355 0.89451 0.89349 0.75164 0.82460 0.80388 0.80669 0.91097 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.94 13.06 21.65 0.28 -58.66 16 2 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 3 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 4 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.24 -13.18 9.97 84.03 0.84 -12.35 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.73 -35.54 5.40 -320.44 -1.73 -37.27 16 10 C 0.15 5.56 4.36 45.52 0.20 5.76 16 11 H 0.08 2.86 8.10 -2.39 -0.02 2.84 16 12 C -0.14 -4.17 7.57 31.12 0.24 -3.93 16 13 C 0.14 3.87 4.33 45.58 0.20 4.07 16 14 H 0.09 2.86 7.47 -2.39 -0.02 2.85 16 15 N -0.69 -16.44 5.22 -442.68 -2.31 -18.75 16 16 C 0.55 14.41 7.76 86.77 0.67 15.09 16 17 O -0.55 -17.90 13.57 -3.90 -0.05 -17.95 16 18 C -0.13 -2.65 5.88 -20.07 -0.12 -2.77 16 19 C -0.06 -1.00 9.32 22.55 0.21 -0.79 16 20 C -0.05 -0.59 6.31 22.28 0.14 -0.45 16 21 Cl -0.05 -0.63 28.95 -2.72 -0.08 -0.71 16 22 C -0.06 -0.57 9.82 22.34 0.22 -0.35 16 23 C -0.10 -1.16 9.82 22.25 0.22 -0.94 16 24 C 0.00 0.01 6.35 22.60 0.14 0.15 16 25 Cl -0.04 -0.95 26.02 -2.72 -0.07 -1.02 16 26 C -0.17 -5.89 7.68 31.18 0.24 -5.65 16 27 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 28 H 0.37 19.77 7.92 -92.71 -0.73 19.04 16 29 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.09 2.73 8.12 -2.39 -0.02 2.71 16 31 H 0.41 7.65 6.74 -92.71 -0.62 7.03 16 32 H 0.16 1.97 6.40 -2.91 -0.02 1.95 16 33 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 34 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -68.73 339.19 1.52 -67.21 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.21 Total: 25.62 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 3.66 Total: -6.01 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -3.76 Total: -114.68 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.05 Total: -17.95 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.15 Total: -1.73 kcal Total: -68.73 1.52 -67.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020973281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.036 kcal (2) G-P(sol) polarization free energy of solvation -68.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds