Wall clock time and date at job start Tue Mar 31 2020 14:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00046 * 2 1 4 4 H 1.48498 * 109.46997 * 270.00040 * 3 2 1 5 5 H 1.48496 * 109.47012 * 29.99891 * 3 2 1 6 6 H 1.48503 * 109.46856 * 150.00104 * 3 2 1 7 7 C 1.38815 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99973 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99940 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99692 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.85385 * 23.80101 * 10 9 7 12 12 C 1.53781 * 113.61225 * 155.00127 * 10 9 7 13 13 C 1.53786 * 87.17350 * 139.93836 * 12 10 9 14 14 H 1.09000 * 113.61138 * 220.06261 * 13 12 10 15 15 N 1.46496 * 113.61518 * 89.15486 * 13 12 10 16 16 C 1.34779 * 119.99390 * 154.99856 * 15 13 12 17 17 O 1.21548 * 120.00587 * 0.02562 * 16 15 13 18 18 C 1.47855 * 119.99444 * 180.02562 * 16 15 13 19 19 C 1.39561 * 120.13346 * 359.72463 * 18 16 15 20 20 C 1.38090 * 119.86772 * 179.76712 * 19 18 16 21 21 Cl 1.73595 * 119.93796 * 180.23170 * 20 19 18 22 22 C 1.38450 * 120.12676 * 0.53183 * 20 19 18 23 23 C 1.38447 * 120.26995 * 359.69835 * 22 20 19 24 24 Cl 1.73602 * 119.93365 * 180.02562 * 23 22 20 25 25 C 1.38085 * 120.13111 * 0.04574 * 23 22 20 26 26 C 1.53782 * 113.61191 * 252.49800 * 10 9 7 27 27 H 0.96999 * 120.00072 * 0.02562 * 1 2 3 28 28 H 0.96997 * 119.99530 * 0.02562 * 9 7 2 29 29 H 1.09002 * 113.61445 * 254.52836 * 12 10 9 30 30 H 1.09002 * 113.61408 * 25.34566 * 12 10 9 31 31 H 0.97001 * 120.00117 * 335.00621 * 15 13 12 32 32 H 1.08002 * 120.06637 * 0.02562 * 19 18 16 33 33 H 1.08001 * 119.86102 * 179.72195 * 22 20 19 34 34 H 1.07999 * 120.06713 * 180.02562 * 25 23 22 35 35 H 1.08997 * 113.61668 * 334.56642 * 26 10 9 36 36 H 1.08994 * 113.61387 * 105.47377 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0022 11 1 3.5277 -3.2967 -0.4079 12 6 5.5258 -2.3655 -0.5981 13 6 5.9873 -3.3088 0.5254 14 1 6.9539 -3.0402 0.9515 15 7 5.8927 -4.7283 0.1757 16 6 6.6855 -5.6280 0.7909 17 8 7.4785 -5.2618 1.6361 18 6 6.5905 -7.0606 0.4376 19 6 5.6769 -7.4849 -0.5283 20 6 5.5961 -8.8235 -0.8575 21 17 4.4646 -9.3525 -2.0631 22 6 6.4115 -9.7455 -0.2235 23 6 7.3164 -9.3313 0.7390 24 17 8.3351 -10.4947 1.5280 25 6 7.4100 -7.9947 1.0729 26 6 4.7876 -2.7934 1.3412 27 1 -0.4850 0.8400 -0.0004 28 1 3.8646 -0.3621 -0.0007 29 1 5.6129 -2.7982 -1.5948 30 1 5.9541 -1.3653 -0.5320 31 1 5.2597 -5.0206 -0.4986 32 1 5.0373 -6.7671 -1.0204 33 1 6.3416 -10.7920 -0.4811 34 1 8.1165 -7.6726 1.8235 35 1 5.0146 -1.9106 1.9388 36 1 4.2787 -3.5715 1.9100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020973333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:02 Heat of formation + Delta-G solvation = 13.453032 kcal Electronic energy + Delta-G solvation = -22016.541400 eV Core-core repulsion = 18360.474601 eV Total energy + Delta-G solvation = -3656.066800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75486 -39.38404 -38.03551 -37.25068 -36.65072 -34.34101 -32.98179 -31.58812 -31.15586 -30.36580 -25.42502 -25.31626 -24.16366 -23.24997 -21.98769 -21.10159 -19.35744 -18.65693 -17.53537 -16.94339 -16.44058 -15.88341 -15.76463 -15.26579 -14.95610 -14.84179 -14.54819 -14.22260 -14.07199 -13.30843 -12.83148 -12.79186 -12.67697 -12.37064 -12.31849 -12.23452 -12.08790 -11.68744 -11.52182 -11.43698 -11.04733 -10.95834 -10.53264 -10.22824 -10.19373 -9.98135 -9.63016 -9.58210 -9.30762 -9.05451 -8.93714 -7.34248 -5.84035 -3.20405 0.11862 0.41789 1.28154 1.73669 2.31365 2.88114 3.21082 3.33060 3.35592 3.41458 4.06813 4.33279 4.40336 4.49340 4.52798 4.68976 4.77174 4.88214 4.99624 5.18329 5.35355 5.36602 5.46851 5.52752 5.61493 5.69461 5.83298 5.85789 6.03203 6.10676 6.29276 6.42797 6.48854 6.85529 7.31812 7.91021 7.97334 8.35282 9.12554 9.85102 10.04226 11.33979 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018241 B = 0.002516 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.644211 B =11124.323912 C =12249.945469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.251 4.251 8 H 0.091 0.909 9 N -0.736 5.736 10 C 0.172 3.828 11 H 0.082 0.918 12 C -0.162 4.162 13 C 0.115 3.885 14 H 0.101 0.899 15 N -0.698 5.698 16 C 0.562 3.438 17 O -0.530 6.530 18 C -0.103 4.103 19 C -0.073 4.073 20 C -0.031 4.031 21 Cl -0.046 7.046 22 C -0.081 4.081 23 C -0.032 4.032 24 Cl -0.050 7.050 25 C -0.048 4.048 26 C -0.176 4.176 27 H 0.260 0.740 28 H 0.363 0.637 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.401 0.599 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.087 0.913 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.296 -21.463 -2.169 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.381 4.381 8 H 0.108 0.892 9 N -0.375 5.375 10 C 0.060 3.940 11 H 0.100 0.900 12 C -0.202 4.202 13 C 0.010 3.990 14 H 0.119 0.881 15 N -0.348 5.348 16 C 0.348 3.652 17 O -0.407 6.407 18 C -0.107 4.107 19 C -0.093 4.093 20 C -0.058 4.058 21 Cl -0.017 7.017 22 C -0.100 4.100 23 C -0.059 4.059 24 Cl -0.020 7.020 25 C -0.068 4.068 26 C -0.218 4.218 27 H 0.070 0.930 28 H 0.197 0.803 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.237 0.763 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.172 0.828 35 H 0.105 0.895 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.552 -21.354 -1.619 27.066 hybrid contribution 0.117 0.886 -0.335 0.954 sum 16.669 -20.468 -1.954 26.469 Atomic orbital electron populations 1.69701 1.05156 1.25973 1.57019 1.24707 0.95265 0.97333 1.01713 0.86549 0.79255 0.84892 0.77812 1.21008 1.21670 1.20234 1.19116 0.80615 0.94778 1.43588 0.89150 1.42740 1.04132 1.01931 1.88726 1.21611 0.89429 0.90134 0.92800 0.89985 1.23896 0.99367 0.99395 0.97566 1.21901 1.00262 0.78583 0.98232 0.88130 1.45614 1.39939 1.07441 1.41835 1.17922 0.80945 0.84779 0.81585 1.90799 1.37465 1.80260 1.32183 1.19873 0.98234 0.94167 0.98437 1.21388 0.97263 0.94643 0.95981 1.20618 0.95855 0.93571 0.95725 1.98421 1.59070 1.90451 1.53795 1.21109 0.93682 1.00765 0.94471 1.20625 0.96627 0.90768 0.97922 1.98406 1.66556 1.58014 1.79069 1.21272 0.97536 0.89900 0.98075 1.24329 0.96347 1.00949 1.00171 0.92959 0.80347 0.91281 0.89027 0.76282 0.83551 0.83296 0.82751 0.89470 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.69 13.97 55.49 0.78 -27.91 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 21.53 27.74 -169.99 -4.71 16.82 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 7 C -0.25 -6.83 10.45 -15.06 -0.16 -6.99 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 9 N -0.74 -16.47 5.21 -52.64 -0.27 -16.75 16 10 C 0.17 2.98 4.36 -67.12 -0.29 2.69 16 11 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 12 C -0.16 -2.22 7.57 -25.92 -0.20 -2.41 16 13 C 0.12 1.53 4.33 -67.02 -0.29 1.24 16 14 H 0.10 1.39 7.47 -51.93 -0.39 1.00 16 15 N -0.70 -7.95 5.22 -53.86 -0.28 -8.23 16 16 C 0.56 6.92 7.77 -12.32 -0.10 6.82 16 17 O -0.53 -8.27 15.95 5.32 0.08 -8.19 16 18 C -0.10 -1.02 5.87 -104.98 -0.62 -1.63 16 19 C -0.07 -0.60 9.32 -39.14 -0.36 -0.97 16 20 C -0.03 -0.24 6.31 -39.56 -0.25 -0.49 16 21 Cl -0.05 -0.36 28.95 -51.86 -1.50 -1.86 16 22 C -0.08 -0.59 9.60 -39.43 -0.38 -0.97 16 23 C -0.03 -0.26 6.31 -39.56 -0.25 -0.51 16 24 Cl -0.05 -0.38 28.95 -51.86 -1.50 -1.88 16 25 C -0.05 -0.45 9.37 -39.15 -0.37 -0.82 16 26 C -0.18 -2.79 7.68 -25.82 -0.20 -2.99 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.36 8.00 5.78 -40.82 -0.24 7.77 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.25 8.12 -51.93 -0.42 0.82 16 31 H 0.40 3.69 6.74 -40.82 -0.28 3.42 16 32 H 0.15 0.98 6.40 -52.49 -0.34 0.64 16 33 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.15 1.46 7.65 -52.49 -0.40 1.06 16 35 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 340.28 15.07 5.13 5.13 Total: -1.00 -31.76 340.28 -9.60 -41.35 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -3.76 Total: 8.47 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -3.55 Total: -6.96 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.22 Total: -52.89 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.08 Total: -8.19 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.82 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -3.00 Total: -3.74 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.76 -9.60 -41.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020973333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.808 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds