Wall clock time and date at job start Tue Mar 31 2020 14:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00046 * 2 1 4 4 H 1.48498 * 109.46997 * 270.00040 * 3 2 1 5 5 H 1.48496 * 109.47012 * 29.99891 * 3 2 1 6 6 H 1.48503 * 109.46856 * 150.00104 * 3 2 1 7 7 C 1.38815 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99973 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99940 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99692 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.85385 * 23.80101 * 10 9 7 12 12 C 1.53781 * 113.61225 * 155.00127 * 10 9 7 13 13 C 1.53786 * 87.17350 * 139.93836 * 12 10 9 14 14 H 1.09000 * 113.61138 * 220.06261 * 13 12 10 15 15 N 1.46496 * 113.61518 * 89.15486 * 13 12 10 16 16 C 1.34779 * 119.99390 * 154.99856 * 15 13 12 17 17 O 1.21548 * 120.00587 * 0.02562 * 16 15 13 18 18 C 1.47855 * 119.99444 * 180.02562 * 16 15 13 19 19 C 1.39561 * 120.13346 * 359.72463 * 18 16 15 20 20 C 1.38090 * 119.86772 * 179.76712 * 19 18 16 21 21 Cl 1.73595 * 119.93796 * 180.23170 * 20 19 18 22 22 C 1.38450 * 120.12676 * 0.53183 * 20 19 18 23 23 C 1.38447 * 120.26995 * 359.69835 * 22 20 19 24 24 Cl 1.73602 * 119.93365 * 180.02562 * 23 22 20 25 25 C 1.38085 * 120.13111 * 0.04574 * 23 22 20 26 26 C 1.53782 * 113.61191 * 252.49800 * 10 9 7 27 27 H 0.96999 * 120.00072 * 0.02562 * 1 2 3 28 28 H 0.96997 * 119.99530 * 0.02562 * 9 7 2 29 29 H 1.09002 * 113.61445 * 254.52836 * 12 10 9 30 30 H 1.09002 * 113.61408 * 25.34566 * 12 10 9 31 31 H 0.97001 * 120.00117 * 335.00621 * 15 13 12 32 32 H 1.08002 * 120.06637 * 0.02562 * 19 18 16 33 33 H 1.08001 * 119.86102 * 179.72195 * 22 20 19 34 34 H 1.07999 * 120.06713 * 180.02562 * 25 23 22 35 35 H 1.08997 * 113.61668 * 334.56642 * 26 10 9 36 36 H 1.08994 * 113.61387 * 105.47377 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0022 11 1 3.5277 -3.2967 -0.4079 12 6 5.5258 -2.3655 -0.5981 13 6 5.9873 -3.3088 0.5254 14 1 6.9539 -3.0402 0.9515 15 7 5.8927 -4.7283 0.1757 16 6 6.6855 -5.6280 0.7909 17 8 7.4785 -5.2618 1.6361 18 6 6.5905 -7.0606 0.4376 19 6 5.6769 -7.4849 -0.5283 20 6 5.5961 -8.8235 -0.8575 21 17 4.4646 -9.3525 -2.0631 22 6 6.4115 -9.7455 -0.2235 23 6 7.3164 -9.3313 0.7390 24 17 8.3351 -10.4947 1.5280 25 6 7.4100 -7.9947 1.0729 26 6 4.7876 -2.7934 1.3412 27 1 -0.4850 0.8400 -0.0004 28 1 3.8646 -0.3621 -0.0007 29 1 5.6129 -2.7982 -1.5948 30 1 5.9541 -1.3653 -0.5320 31 1 5.2597 -5.0206 -0.4986 32 1 5.0373 -6.7671 -1.0204 33 1 6.3416 -10.7920 -0.4811 34 1 8.1165 -7.6726 1.8235 35 1 5.0146 -1.9106 1.9388 36 1 4.2787 -3.5715 1.9100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020973333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:02 Heat of formation + Delta-G solvation = -6.288915 kcal Electronic energy + Delta-G solvation = -22017.397476 eV Core-core repulsion = 18360.474601 eV Total energy + Delta-G solvation = -3656.922875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66816 -40.31767 -39.14098 -37.86955 -37.30445 -35.90691 -34.38920 -32.77524 -32.03996 -31.67484 -26.74573 -26.53361 -25.38073 -24.02252 -23.46550 -22.03510 -20.70537 -19.67758 -19.23699 -17.80789 -17.17640 -16.96057 -16.65963 -16.35911 -16.27910 -15.99959 -15.56071 -15.37508 -14.92008 -14.79709 -14.33219 -14.08315 -13.68081 -13.44499 -13.39258 -13.34478 -12.97144 -12.88414 -12.57360 -12.32830 -12.20422 -12.09925 -12.04375 -11.84664 -11.77602 -11.27399 -11.21602 -10.88608 -10.31985 -10.04788 -9.95535 -9.26929 -8.01372 -5.34497 -0.58387 -0.23847 0.65034 1.10870 1.40004 1.43071 1.49793 1.50301 1.95069 2.41755 2.49925 3.28728 3.31826 3.60807 3.68531 3.74630 3.75927 3.78998 3.82449 4.01030 4.15288 4.24670 4.27531 4.66451 4.71713 4.83203 4.85017 4.89607 4.93094 5.08467 5.15600 5.18273 5.21071 5.60715 5.78666 6.23658 6.38925 7.03272 7.09313 7.86362 8.04402 9.20008 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018241 B = 0.002516 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.644211 B =11124.323912 C =12249.945469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.250 1.250 7 C -0.232 4.232 8 H 0.059 0.941 9 N -0.741 5.741 10 C 0.153 3.847 11 H 0.082 0.918 12 C -0.142 4.142 13 C 0.132 3.868 14 H 0.101 0.899 15 N -0.691 5.691 16 C 0.564 3.436 17 O -0.567 6.567 18 C -0.114 4.114 19 C -0.067 4.067 20 C -0.034 4.034 21 Cl -0.043 7.043 22 C -0.070 4.070 23 C -0.034 4.034 24 Cl -0.044 7.044 25 C -0.053 4.053 26 C -0.175 4.175 27 H 0.257 0.743 28 H 0.367 0.633 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.413 0.587 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.148 0.852 35 H 0.081 0.919 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.235 -22.203 -3.050 28.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.228 1.228 6 H -0.175 1.175 7 C -0.363 4.363 8 H 0.077 0.923 9 N -0.382 5.382 10 C 0.043 3.957 11 H 0.100 0.900 12 C -0.181 4.181 13 C 0.026 3.974 14 H 0.119 0.881 15 N -0.342 5.342 16 C 0.352 3.648 17 O -0.447 6.447 18 C -0.118 4.118 19 C -0.086 4.086 20 C -0.061 4.061 21 Cl -0.013 7.013 22 C -0.089 4.089 23 C -0.062 4.062 24 Cl -0.015 7.015 25 C -0.073 4.073 26 C -0.217 4.217 27 H 0.066 0.934 28 H 0.201 0.799 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.251 0.749 32 H 0.179 0.821 33 H 0.187 0.813 34 H 0.166 0.834 35 H 0.099 0.901 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 18.545 -22.148 -2.518 28.996 hybrid contribution -0.492 0.918 -0.051 1.043 sum 18.053 -21.230 -2.569 27.986 Atomic orbital electron populations 1.69886 1.07213 1.26633 1.59789 1.25534 0.96103 1.01361 1.02788 0.85416 0.78672 0.79600 0.78120 1.20285 1.22755 1.17456 1.19107 0.82819 0.93432 1.40968 0.92307 1.42746 1.02417 1.03980 1.89065 1.21982 0.90925 0.88233 0.94514 0.90042 1.23729 0.95639 1.00118 0.98640 1.21642 0.99012 0.79521 0.97248 0.88073 1.45525 1.40052 1.06687 1.41921 1.18234 0.80138 0.85710 0.80762 1.90781 1.39037 1.81013 1.33840 1.19619 0.99649 0.92733 0.99816 1.21496 0.96676 0.95243 0.95233 1.20650 0.96043 0.93520 0.95895 1.98428 1.58932 1.90369 1.53616 1.21338 0.92523 1.01715 0.93348 1.20611 0.96948 0.90412 0.98180 1.98411 1.66448 1.57629 1.79030 1.21280 0.97463 0.90484 0.98035 1.24221 0.97407 1.00693 0.99334 0.93440 0.79901 0.88992 0.88223 0.74879 0.82139 0.81336 0.83379 0.90092 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.29 13.97 21.65 0.30 -61.99 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 3 Si 0.95 44.33 27.74 68.60 1.90 46.23 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.25 -10.38 6.52 99.48 0.65 -9.73 16 7 C -0.23 -12.72 10.45 84.03 0.88 -11.85 16 8 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 9 N -0.74 -32.26 5.21 -320.44 -1.67 -33.93 16 10 C 0.15 5.06 4.36 45.52 0.20 5.26 16 11 H 0.08 2.69 8.10 -2.39 -0.02 2.68 16 12 C -0.14 -3.45 7.57 31.12 0.24 -3.21 16 13 C 0.13 3.22 4.33 45.58 0.20 3.42 16 14 H 0.10 2.59 7.47 -2.39 -0.02 2.57 16 15 N -0.69 -14.45 5.22 -442.61 -2.31 -16.75 16 16 C 0.56 13.22 7.77 86.79 0.67 13.90 16 17 O -0.57 -17.37 15.95 -3.87 -0.06 -17.43 16 18 C -0.11 -2.10 5.87 -20.09 -0.12 -2.22 16 19 C -0.07 -0.97 9.32 22.55 0.21 -0.76 16 20 C -0.03 -0.46 6.31 22.29 0.14 -0.32 16 21 Cl -0.04 -0.57 28.95 -2.72 -0.08 -0.65 16 22 C -0.07 -0.87 9.60 22.37 0.21 -0.65 16 23 C -0.03 -0.50 6.31 22.28 0.14 -0.36 16 24 Cl -0.04 -0.61 28.95 -2.72 -0.08 -0.69 16 25 C -0.05 -0.93 9.37 22.55 0.21 -0.72 16 26 C -0.17 -5.34 7.68 31.18 0.24 -5.10 16 27 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.37 15.32 5.78 -92.71 -0.54 14.78 16 29 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 30 H 0.10 2.35 8.12 -2.39 -0.02 2.33 16 31 H 0.41 6.65 6.74 -92.71 -0.62 6.02 16 32 H 0.16 1.77 6.40 -2.91 -0.02 1.75 16 33 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.15 2.77 7.65 -2.91 -0.02 2.75 16 35 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -69.32 340.28 1.63 -67.70 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -0.07 Total: 23.51 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 3.69 Total: -5.99 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -3.67 Total: -112.68 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.06 Total: -17.43 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.90 Total: 46.23 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.16 Total: -1.34 kcal Total: -69.32 1.63 -67.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020973333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.408 kcal (2) G-P(sol) polarization free energy of solvation -69.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds