Wall clock time and date at job start Tue Mar 31 2020 14:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99889 * 2 1 4 4 H 1.48504 * 109.46838 * 239.99607 * 3 2 1 5 5 H 1.48498 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47212 * 120.00253 * 3 2 1 7 7 C 1.38820 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99893 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99547 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99571 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.90837 * 23.74534 * 10 9 7 12 12 C 1.53774 * 113.61399 * 155.00271 * 10 9 7 13 13 C 1.53784 * 87.08249 * 89.11582 * 12 10 9 14 14 H 1.09000 * 113.60967 * 270.79610 * 13 12 10 15 15 N 1.46504 * 113.61494 * 139.98461 * 13 12 10 16 16 C 1.34774 * 119.99863 * 155.00221 * 15 13 12 17 17 O 1.21568 * 120.00300 * 359.97438 * 16 15 13 18 18 C 1.47694 * 119.99759 * 179.97438 * 16 15 13 19 19 C 1.39746 * 120.16782 * 90.22559 * 18 16 15 20 20 Cl 1.73599 * 120.08602 * 0.02574 * 19 18 16 21 21 C 1.38090 * 119.83040 * 180.25565 * 19 18 16 22 22 C 1.38336 * 120.16417 * 359.49066 * 21 19 18 23 23 C 1.38325 * 120.34232 * 0.28086 * 22 21 19 24 24 C 1.38097 * 120.16944 * 359.97438 * 23 22 21 25 25 Cl 1.73594 * 120.08782 * 180.02562 * 24 23 22 26 26 C 1.53772 * 87.08086 * 25.43050 * 13 12 10 27 27 H 0.97001 * 119.99849 * 0.02562 * 1 2 3 28 28 H 0.96991 * 120.00667 * 0.02562 * 9 7 2 29 29 H 1.09003 * 113.61565 * 334.56346 * 12 10 9 30 30 H 1.09004 * 113.69049 * 203.67180 * 12 10 9 31 31 H 0.97004 * 119.99577 * 334.99265 * 15 13 12 32 32 H 1.08002 * 119.92074 * 179.77566 * 21 19 18 33 33 H 1.08004 * 119.82903 * 180.25940 * 22 21 19 34 34 H 1.07997 * 119.91626 * 179.97438 * 23 22 21 35 35 H 1.09001 * 113.61588 * 89.11621 * 26 13 12 36 36 H 1.08996 * 113.61684 * 220.01713 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0027 11 1 3.0660 -3.5644 0.4069 12 6 1.2601 -4.8283 0.5992 13 6 0.7204 -5.0798 -0.8187 14 1 -0.1911 -4.5261 -1.0435 15 7 0.6238 -6.4997 -1.1665 16 6 -0.2554 -6.9055 -2.1039 17 8 -0.9686 -6.0935 -2.6605 18 6 -0.3524 -8.3369 -2.4549 19 6 -1.2424 -9.1690 -1.7706 20 17 -2.2391 -8.5232 -0.5044 21 6 -1.3236 -10.5074 -2.1009 22 6 -0.5344 -11.0225 -3.1135 23 6 0.3455 -10.2042 -3.7987 24 6 0.4419 -8.8648 -3.4763 25 17 1.5464 -7.8396 -4.3379 26 6 1.9990 -4.4034 -1.3405 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3881 0.0016 29 1 0.4937 -4.5178 1.3094 30 1 1.8858 -5.6365 0.9780 31 1 1.1928 -7.1477 -0.7222 32 1 -2.0084 -11.1526 -1.5706 33 1 -0.6053 -12.0692 -3.3702 34 1 0.9588 -10.6137 -4.5877 35 1 2.8279 -5.0947 -1.4925 36 1 1.8292 -3.7499 -2.1961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020973501.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:11 Heat of formation + Delta-G solvation = 11.294860 kcal Electronic energy + Delta-G solvation = -22544.082900 eV Core-core repulsion = 18887.922515 eV Total energy + Delta-G solvation = -3656.160385 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.48735 -39.14651 -37.75932 -37.11265 -36.61412 -34.03565 -32.75934 -31.52584 -31.16239 -29.62540 -25.20104 -25.08721 -23.84382 -23.25840 -22.54382 -20.71783 -19.03764 -18.04131 -17.36350 -17.02735 -16.56670 -16.14342 -15.38319 -14.87476 -14.82762 -14.30707 -14.22920 -14.07345 -13.84116 -13.10409 -12.81062 -12.68925 -12.67797 -12.27016 -12.03585 -11.93942 -11.65561 -11.49581 -11.42805 -11.26794 -10.85011 -10.79455 -10.26573 -10.16075 -10.06217 -9.71497 -9.63637 -9.39243 -9.21195 -8.89590 -8.72031 -6.98778 -5.77015 -3.07114 0.38839 0.48450 1.43680 1.86161 2.52753 2.84495 3.18215 3.45014 3.49240 3.50597 4.23246 4.40445 4.51165 4.57992 4.62608 4.83979 4.94389 5.09546 5.25960 5.41709 5.46379 5.47960 5.50590 5.64921 5.89721 5.96482 6.00938 6.11471 6.20925 6.38208 6.61537 6.73643 6.79696 7.04095 7.56766 7.70804 8.22261 8.41124 9.51786 10.08162 10.42219 11.45096 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.020076 B = 0.002959 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.334010 B = 9459.301676 C =10265.190927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.172 3.828 11 H 0.069 0.931 12 C -0.163 4.163 13 C 0.126 3.874 14 H 0.115 0.885 15 N -0.701 5.701 16 C 0.560 3.440 17 O -0.512 6.512 18 C -0.107 4.107 19 C 0.000 4.000 20 Cl -0.038 7.038 21 C -0.109 4.109 22 C -0.083 4.083 23 C -0.109 4.109 24 C 0.000 4.000 25 Cl -0.037 7.037 26 C -0.182 4.182 27 H 0.257 0.743 28 H 0.386 0.614 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.397 0.603 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.069 0.931 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 -27.882 -4.558 28.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.059 3.941 11 H 0.087 0.913 12 C -0.203 4.203 13 C 0.023 3.977 14 H 0.133 0.867 15 N -0.351 5.351 16 C 0.343 3.657 17 O -0.386 6.386 18 C -0.112 4.112 19 C -0.028 4.028 20 Cl -0.009 7.009 21 C -0.128 4.128 22 C -0.101 4.101 23 C -0.128 4.128 24 C -0.028 4.028 25 Cl -0.008 7.008 26 C -0.225 4.225 27 H 0.067 0.933 28 H 0.220 0.780 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.231 0.769 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.088 0.912 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.017 -26.900 -4.898 27.342 hybrid contribution 0.356 0.600 0.105 0.706 sum 0.339 -26.300 -4.793 26.735 Atomic orbital electron populations 1.69656 1.05147 1.25967 1.56983 1.24781 0.95528 0.97818 1.02599 0.86242 0.78512 0.83397 0.77854 1.21196 1.21671 1.21199 1.19221 0.91062 0.83905 1.43506 0.90985 1.42190 1.05770 0.99386 1.87013 1.20902 0.95252 0.85402 0.92561 0.91326 1.23901 1.00763 0.99947 0.95696 1.22724 0.99984 0.78855 0.96154 0.86707 1.46058 1.39097 1.10234 1.39678 1.17841 0.80939 0.86450 0.80478 1.90870 1.42715 1.53366 1.51683 1.19882 0.98248 0.95242 0.97795 1.20867 0.95090 0.93346 0.93447 1.98439 1.67274 1.86342 1.48839 1.21150 1.00367 0.92929 0.98316 1.21226 0.94209 1.00474 0.94227 1.21152 0.99729 0.91044 1.00835 1.20879 0.94667 0.92218 0.94995 1.98442 1.60211 1.67161 1.74952 1.24313 0.96107 0.99685 1.02369 0.93314 0.77953 0.90783 0.90275 0.76924 0.83655 0.83617 0.83659 0.91204 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.25 -6.85 9.97 -15.06 -0.15 -7.00 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.71 -17.78 5.31 -52.64 -0.28 -18.06 16 10 C 0.17 3.37 4.56 -67.12 -0.31 3.07 16 11 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 12 C -0.16 -2.60 7.58 -25.92 -0.20 -2.80 16 13 C 0.13 2.13 4.12 -67.12 -0.28 1.85 16 14 H 0.12 2.34 7.46 -51.93 -0.39 1.95 16 15 N -0.70 -9.84 5.35 -54.01 -0.29 -10.13 16 16 C 0.56 8.71 5.36 -12.40 -0.07 8.64 16 17 O -0.51 -10.27 16.71 5.31 0.09 -10.18 16 18 C -0.11 -1.32 5.64 -104.91 -0.59 -1.91 16 19 C 0.00 0.00 6.35 -39.07 -0.25 -0.25 16 20 Cl -0.04 -0.44 28.04 -51.86 -1.45 -1.89 16 21 C -0.11 -0.78 9.82 -39.60 -0.39 -1.17 16 22 C -0.08 -0.47 10.03 -39.51 -0.40 -0.87 16 23 C -0.11 -0.79 9.82 -39.60 -0.39 -1.18 16 24 C 0.00 0.00 6.35 -39.07 -0.25 -0.25 16 25 Cl -0.04 -0.43 28.04 -51.86 -1.45 -1.89 16 26 C -0.18 -3.25 7.68 -25.92 -0.20 -3.45 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.39 10.43 7.90 -40.82 -0.32 10.11 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 31 H 0.40 4.40 8.71 -40.82 -0.36 4.04 16 32 H 0.15 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.15 0.34 8.06 -52.48 -0.42 -0.08 16 34 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 345.18 15.07 5.20 5.20 Total: -1.00 -33.37 345.18 -10.03 -43.39 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -3.99 Total: 9.46 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -3.55 Total: -5.71 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.16 Total: -55.90 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -2.91 Total: -3.78 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.37 -10.03 -43.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020973501.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.689 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds