Wall clock time and date at job start Tue Mar 31 2020 14:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99889 * 2 1 4 4 H 1.48504 * 109.46838 * 239.99607 * 3 2 1 5 5 H 1.48498 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47212 * 120.00253 * 3 2 1 7 7 C 1.38820 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99893 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99547 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99571 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.90837 * 23.74534 * 10 9 7 12 12 C 1.53774 * 113.61399 * 155.00271 * 10 9 7 13 13 C 1.53784 * 87.08249 * 89.11582 * 12 10 9 14 14 H 1.09000 * 113.60967 * 270.79610 * 13 12 10 15 15 N 1.46504 * 113.61494 * 139.98461 * 13 12 10 16 16 C 1.34774 * 119.99863 * 155.00221 * 15 13 12 17 17 O 1.21568 * 120.00300 * 359.97438 * 16 15 13 18 18 C 1.47694 * 119.99759 * 179.97438 * 16 15 13 19 19 C 1.39746 * 120.16782 * 90.22559 * 18 16 15 20 20 Cl 1.73599 * 120.08602 * 0.02574 * 19 18 16 21 21 C 1.38090 * 119.83040 * 180.25565 * 19 18 16 22 22 C 1.38336 * 120.16417 * 359.49066 * 21 19 18 23 23 C 1.38325 * 120.34232 * 0.28086 * 22 21 19 24 24 C 1.38097 * 120.16944 * 359.97438 * 23 22 21 25 25 Cl 1.73594 * 120.08782 * 180.02562 * 24 23 22 26 26 C 1.53772 * 87.08086 * 25.43050 * 13 12 10 27 27 H 0.97001 * 119.99849 * 0.02562 * 1 2 3 28 28 H 0.96991 * 120.00667 * 0.02562 * 9 7 2 29 29 H 1.09003 * 113.61565 * 334.56346 * 12 10 9 30 30 H 1.09004 * 113.69049 * 203.67180 * 12 10 9 31 31 H 0.97004 * 119.99577 * 334.99265 * 15 13 12 32 32 H 1.08002 * 119.92074 * 179.77566 * 21 19 18 33 33 H 1.08004 * 119.82903 * 180.25940 * 22 21 19 34 34 H 1.07997 * 119.91626 * 179.97438 * 23 22 21 35 35 H 1.09001 * 113.61588 * 89.11621 * 26 13 12 36 36 H 1.08996 * 113.61684 * 220.01713 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0027 11 1 3.0660 -3.5644 0.4069 12 6 1.2601 -4.8283 0.5992 13 6 0.7204 -5.0798 -0.8187 14 1 -0.1911 -4.5261 -1.0435 15 7 0.6238 -6.4997 -1.1665 16 6 -0.2554 -6.9055 -2.1039 17 8 -0.9686 -6.0935 -2.6605 18 6 -0.3524 -8.3369 -2.4549 19 6 -1.2424 -9.1690 -1.7706 20 17 -2.2391 -8.5232 -0.5044 21 6 -1.3236 -10.5074 -2.1009 22 6 -0.5344 -11.0225 -3.1135 23 6 0.3455 -10.2042 -3.7987 24 6 0.4419 -8.8648 -3.4763 25 17 1.5464 -7.8396 -4.3379 26 6 1.9990 -4.4034 -1.3405 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3881 0.0016 29 1 0.4937 -4.5178 1.3094 30 1 1.8858 -5.6365 0.9780 31 1 1.1928 -7.1477 -0.7222 32 1 -2.0084 -11.1526 -1.5706 33 1 -0.6053 -12.0692 -3.3702 34 1 0.9588 -10.6137 -4.5877 35 1 2.8279 -5.0947 -1.4925 36 1 1.8292 -3.7499 -2.1961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020973501.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:11 Heat of formation + Delta-G solvation = -11.213147 kcal Electronic energy + Delta-G solvation = -22545.058920 eV Core-core repulsion = 18887.922515 eV Total energy + Delta-G solvation = -3657.136406 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.53985 -40.24968 -39.08510 -37.91815 -37.40065 -35.76671 -34.37413 -32.48891 -31.80837 -31.48340 -26.62115 -26.51894 -25.43754 -23.93873 -23.91807 -21.85271 -20.43233 -19.39152 -19.06432 -17.85841 -17.57416 -17.34408 -16.69247 -16.26370 -15.84465 -15.53355 -15.36939 -15.26689 -14.94732 -14.91559 -14.36545 -13.65805 -13.50710 -13.49774 -13.36429 -13.31856 -12.79886 -12.76359 -12.65522 -12.26992 -12.22928 -12.21561 -12.10784 -11.85176 -11.75048 -11.40518 -11.08227 -10.87008 -10.14241 -10.08112 -9.89823 -9.04485 -7.96088 -5.26178 -0.31347 -0.15386 0.66836 1.09703 1.34759 1.46262 1.50145 1.56084 2.01785 2.28528 2.54823 3.35381 3.43513 3.62171 3.69337 3.78038 3.85418 3.90360 4.08181 4.23979 4.25206 4.28044 4.34965 4.75041 4.80130 4.83960 4.95678 4.99327 5.09993 5.11937 5.20286 5.26867 5.46781 5.48867 5.62544 6.25695 6.39976 7.07307 7.30522 8.06423 8.28101 9.27291 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.020076 B = 0.002959 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.334010 B = 9459.301676 C =10265.190927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.977 3.023 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.273 1.273 7 C -0.245 4.245 8 H 0.083 0.917 9 N -0.723 5.723 10 C 0.153 3.847 11 H 0.081 0.919 12 C -0.137 4.137 13 C 0.132 3.868 14 H 0.072 0.928 15 N -0.687 5.687 16 C 0.562 3.438 17 O -0.569 6.569 18 C -0.133 4.133 19 C -0.013 4.013 20 Cl -0.058 7.058 21 C -0.099 4.099 22 C -0.060 4.060 23 C -0.100 4.100 24 C -0.013 4.013 25 Cl -0.058 7.058 26 C -0.168 4.168 27 H 0.251 0.749 28 H 0.371 0.629 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.415 0.585 32 H 0.174 0.826 33 H 0.194 0.806 34 H 0.174 0.826 35 H 0.104 0.896 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.053 -31.644 -4.535 32.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.198 1.198 7 C -0.376 4.376 8 H 0.101 0.899 9 N -0.360 5.360 10 C 0.042 3.958 11 H 0.099 0.901 12 C -0.176 4.176 13 C 0.028 3.972 14 H 0.090 0.910 15 N -0.337 5.337 16 C 0.347 3.653 17 O -0.448 6.448 18 C -0.138 4.138 19 C -0.041 4.041 20 Cl -0.029 7.029 21 C -0.118 4.118 22 C -0.077 4.077 23 C -0.118 4.118 24 C -0.041 4.041 25 Cl -0.029 7.029 26 C -0.210 4.210 27 H 0.060 0.940 28 H 0.203 0.797 29 H 0.081 0.919 30 H 0.143 0.857 31 H 0.252 0.748 32 H 0.191 0.809 33 H 0.211 0.789 34 H 0.191 0.809 35 H 0.122 0.878 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.710 -30.743 -4.854 31.171 hybrid contribution -0.136 1.558 0.051 1.565 sum 1.574 -29.185 -4.802 29.619 Atomic orbital electron populations 1.69837 1.06840 1.26208 1.59353 1.25651 0.96368 1.01421 1.03609 0.85164 0.77126 0.78864 0.78320 1.20478 1.22419 1.19832 1.19685 0.91699 0.84990 1.41272 0.89949 1.42392 1.05313 1.00883 1.87456 1.21220 0.95822 0.84505 0.94225 0.90132 1.23741 1.00132 0.99233 0.94528 1.22277 0.97813 0.80159 0.96978 0.91002 1.45843 1.39154 1.09264 1.39441 1.18369 0.79708 0.87765 0.79414 1.90835 1.44840 1.55484 1.53632 1.19624 1.00870 0.93248 1.00059 1.21052 0.95008 0.94534 0.93487 1.98431 1.67845 1.86874 1.49776 1.21569 1.00416 0.91494 0.98311 1.21786 0.91687 1.02248 0.92020 1.21567 0.99754 0.89435 1.01057 1.21058 0.94791 0.93332 0.94914 1.98433 1.60923 1.68188 1.75349 1.24162 0.97672 0.99428 0.99751 0.94040 0.79692 0.91913 0.85682 0.74787 0.80858 0.78926 0.80885 0.87781 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.79 13.06 21.65 0.28 -61.51 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.24 -13.85 9.97 84.04 0.84 -13.02 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.72 -37.58 5.31 -320.44 -1.70 -39.28 16 10 C 0.15 5.97 4.56 45.52 0.21 6.18 16 11 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16 12 C -0.14 -4.23 7.58 31.12 0.24 -3.99 16 13 C 0.13 4.57 4.12 45.52 0.19 4.76 16 14 H 0.07 3.16 7.46 -2.39 -0.02 3.15 16 15 N -0.69 -19.19 5.35 -443.06 -2.37 -21.56 16 16 C 0.56 17.91 5.36 86.74 0.47 18.38 16 17 O -0.57 -24.29 16.71 -3.93 -0.07 -24.36 16 18 C -0.13 -3.18 5.64 -20.05 -0.11 -3.30 16 19 C -0.01 -0.26 6.35 22.60 0.14 -0.11 16 20 Cl -0.06 -1.32 28.04 -2.72 -0.08 -1.40 16 21 C -0.10 -1.04 9.82 22.26 0.22 -0.82 16 22 C -0.06 -0.36 10.03 22.31 0.22 -0.14 16 23 C -0.10 -1.05 9.82 22.26 0.22 -0.83 16 24 C -0.01 -0.26 6.35 22.60 0.14 -0.12 16 25 Cl -0.06 -1.33 28.04 -2.72 -0.08 -1.40 16 26 C -0.17 -6.02 7.68 31.12 0.24 -5.78 16 27 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.37 21.18 7.90 -92.72 -0.73 20.44 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.13 2.74 8.12 -2.38 -0.02 2.72 16 31 H 0.41 8.52 8.71 -92.71 -0.81 7.71 16 32 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 33 H 0.19 -0.51 8.06 -2.91 -0.02 -0.53 16 34 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 35 H 0.10 2.99 8.14 -2.39 -0.02 2.98 16 36 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -78.50 345.18 1.10 -77.40 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -0.40 Total: 25.87 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 3.47 Total: -2.96 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -3.79 Total: -122.35 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.07 Total: -24.36 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Atomic # 17 Polarization: -2.65 SS G_CDS: -0.15 Total: -2.80 kcal Total: -78.50 1.10 -77.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020973501.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.190 kcal (2) G-P(sol) polarization free energy of solvation -78.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds