Wall clock time and date at job start Tue Mar 31 2020 14:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00354 * 2 1 4 4 H 1.48502 * 109.47267 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47234 * 299.99541 * 3 2 1 6 6 H 1.48496 * 109.47557 * 59.99680 * 3 2 1 7 7 C 1.38816 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99895 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99482 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99324 * 179.97438 * 9 7 2 11 11 H 1.08991 * 112.91460 * 314.87081 * 10 9 7 12 12 C 1.53781 * 113.61274 * 86.12648 * 10 9 7 13 13 C 1.53782 * 87.08367 * 89.11044 * 12 10 9 14 14 H 1.09006 * 113.61485 * 139.97828 * 13 12 10 15 15 N 1.46494 * 113.61740 * 270.80067 * 13 12 10 16 16 C 1.34770 * 120.00277 * 201.65685 * 15 13 12 17 17 O 1.21556 * 120.00127 * 0.02562 * 16 15 13 18 18 C 1.47778 * 120.00115 * 179.97438 * 16 15 13 19 19 C 1.39630 * 120.14662 * 359.73655 * 18 16 15 20 20 C 1.37903 * 119.88529 * 179.73762 * 19 18 16 21 21 C 1.38402 * 120.19971 * 0.51040 * 20 19 18 22 22 C 1.38370 * 120.30146 * 359.76168 * 21 20 19 23 23 Cl 1.73609 * 119.94733 * 180.02562 * 22 21 20 24 24 C 1.38269 * 120.10545 * 359.97438 * 22 21 20 25 25 Cl 1.73605 * 120.09782 * 179.97438 * 24 22 21 26 26 C 1.53786 * 87.08035 * 25.43533 * 13 12 10 27 27 H 0.97000 * 119.99821 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00290 * 0.02562 * 9 7 2 29 29 H 1.08996 * 113.61313 * 334.56545 * 12 10 9 30 30 H 1.09002 * 113.61570 * 203.65865 * 12 10 9 31 31 H 0.97008 * 119.99917 * 21.66335 * 15 13 12 32 32 H 1.07994 * 120.05988 * 359.97438 * 19 18 16 33 33 H 1.08002 * 119.90104 * 180.24608 * 20 19 18 34 34 H 1.07998 * 119.85300 * 179.74158 * 21 20 19 35 35 H 1.08997 * 113.61548 * 89.11595 * 26 13 12 36 36 H 1.08997 * 113.61326 * 219.93611 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0016 11 1 2.8829 -3.6705 -0.7105 12 6 2.4494 -4.1420 1.4074 13 6 1.0924 -4.8641 1.4505 14 1 1.1380 -5.8525 1.9079 15 7 0.0056 -4.0397 1.9846 16 6 -1.0993 -4.6247 2.4877 17 8 -1.1940 -5.8365 2.4989 18 6 -2.1954 -3.7931 3.0270 19 6 -2.0871 -2.4010 3.0218 20 6 -3.1155 -1.6299 3.5214 21 6 -4.2498 -2.2321 4.0376 22 6 -4.3631 -3.6110 4.0519 23 17 -5.7903 -4.3566 4.7009 24 6 -3.3419 -4.3961 3.5492 25 17 -3.4840 -6.1262 3.5678 26 6 1.1480 -4.8935 -0.0861 27 1 -0.4850 0.8401 -0.0004 28 1 0.3554 -2.3880 0.0016 29 1 2.5394 -3.3378 2.1375 30 1 3.3043 -4.8183 1.4135 31 1 0.0812 -3.0726 1.9760 32 1 -1.2012 -1.9288 2.6237 33 1 -3.0337 -0.5530 3.5139 34 1 -5.0500 -1.6229 4.4312 35 1 1.6470 -5.7751 -0.4882 36 1 0.1870 -4.6972 -0.5616 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023016122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:12 Heat of formation + Delta-G solvation = 20.917897 kcal Electronic energy + Delta-G solvation = -23218.728704 eV Core-core repulsion = 19562.985605 eV Total energy + Delta-G solvation = -3655.743099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.30857 -39.05370 -37.66146 -36.57326 -36.35904 -33.73306 -32.84311 -31.11665 -30.64451 -29.84690 -25.31094 -24.90669 -24.06209 -22.87838 -22.25100 -20.36123 -18.98261 -18.01640 -17.28337 -16.49024 -16.06346 -15.41644 -15.34234 -14.93800 -14.75869 -14.36788 -14.24438 -13.91379 -13.67320 -13.27573 -13.17448 -12.21596 -12.09976 -11.89094 -11.82472 -11.72596 -11.50096 -11.42567 -11.31879 -11.00857 -10.93294 -10.76758 -10.39601 -10.24785 -9.85812 -9.60854 -9.34686 -9.12574 -9.01907 -8.79767 -8.56083 -7.14093 -5.95060 -3.24538 0.59416 0.88923 1.76044 2.19502 2.85233 3.32146 3.37784 3.40915 3.41198 3.67845 4.44264 4.54526 4.75234 4.87849 5.06473 5.08916 5.17308 5.18972 5.36452 5.40649 5.45843 5.69638 5.76702 5.89683 5.95755 6.10535 6.16690 6.27147 6.33496 6.41921 6.55901 6.61824 6.79734 7.04397 7.59934 7.88618 8.24408 8.49126 9.35744 9.90311 10.25821 11.27070 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.004068 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.829534 B = 6881.444439 C = 8616.126090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.074 0.926 9 N -0.711 5.711 10 C 0.161 3.839 11 H 0.053 0.947 12 C -0.178 4.178 13 C 0.128 3.872 14 H 0.091 0.909 15 N -0.693 5.693 16 C 0.554 3.446 17 O -0.526 6.526 18 C -0.117 4.117 19 C -0.057 4.057 20 C -0.106 4.106 21 C -0.079 4.079 22 C -0.048 4.048 23 Cl -0.053 7.053 24 C 0.015 3.985 25 Cl -0.017 7.017 26 C -0.164 4.164 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.413 0.587 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.088 0.912 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 -6.447 8.550 12.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.352 5.352 10 C 0.050 3.950 11 H 0.071 0.929 12 C -0.219 4.219 13 C 0.023 3.977 14 H 0.109 0.891 15 N -0.347 5.347 16 C 0.340 3.660 17 O -0.403 6.403 18 C -0.121 4.121 19 C -0.076 4.076 20 C -0.125 4.125 21 C -0.098 4.098 22 C -0.076 4.076 23 Cl -0.024 7.024 24 C -0.014 4.014 25 Cl 0.013 6.987 26 C -0.203 4.203 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.253 0.747 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.106 0.894 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.074 -7.383 8.591 13.355 hybrid contribution -0.011 1.345 -0.019 1.345 sum -7.085 -6.038 8.572 12.655 Atomic orbital electron populations 1.69646 1.05004 1.25796 1.57649 1.24719 0.95555 0.97648 1.02664 0.86122 0.78917 0.83949 0.77210 1.20544 1.21854 1.21833 1.19303 0.91303 0.83736 1.42808 0.90853 1.42276 1.05562 0.99540 1.87846 1.21223 0.94087 0.85962 0.93717 0.92879 1.24062 0.94883 1.00264 1.02728 1.21726 0.87019 0.94657 0.94330 0.89094 1.45819 1.16844 1.11525 1.60493 1.17944 0.82154 0.87527 0.78421 1.90825 1.79602 1.13287 1.56607 1.19833 0.94874 0.94097 1.03309 1.21738 0.99917 0.91498 0.94420 1.21236 0.92389 1.01314 0.97540 1.21237 0.98911 0.91587 0.98054 1.20645 0.89839 0.93018 1.04082 1.98378 1.36978 1.82504 1.84528 1.20799 0.93816 0.87206 0.99545 1.98417 1.97448 1.06480 1.96362 1.23724 1.01187 0.99306 0.96079 0.93397 0.78131 0.90655 0.89976 0.74660 0.82851 0.83537 0.83820 0.89398 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.80 13.06 55.49 0.72 -24.08 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 20.63 29.55 -169.99 -5.02 15.60 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.01 9.99 -15.06 -0.15 -6.16 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.71 -15.85 4.41 -52.63 -0.23 -16.08 16 10 C 0.16 2.95 4.54 -67.11 -0.30 2.65 16 11 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 12 C -0.18 -2.85 7.61 -25.92 -0.20 -3.04 16 13 C 0.13 2.07 4.27 -67.12 -0.29 1.79 16 14 H 0.09 1.46 7.55 -51.93 -0.39 1.06 16 15 N -0.69 -11.71 4.90 -53.98 -0.26 -11.98 16 16 C 0.55 9.61 7.77 -12.36 -0.10 9.51 16 17 O -0.53 -10.06 13.61 5.32 0.07 -9.99 16 18 C -0.12 -1.83 5.88 -104.94 -0.62 -2.44 16 19 C -0.06 -0.81 9.54 -39.18 -0.37 -1.18 16 20 C -0.11 -1.26 10.03 -39.64 -0.40 -1.66 16 21 C -0.08 -0.87 9.82 -39.47 -0.39 -1.26 16 22 C -0.05 -0.62 6.32 -39.52 -0.25 -0.87 16 23 Cl -0.05 -0.61 27.96 -51.86 -1.45 -2.06 16 24 C 0.02 0.23 6.36 -39.04 -0.25 -0.02 16 25 Cl -0.02 -0.26 25.02 -51.86 -1.30 -1.56 16 26 C -0.16 -2.65 7.57 -25.91 -0.20 -2.85 16 27 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.38 9.03 6.98 -40.82 -0.29 8.74 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.41 7.30 5.22 -40.82 -0.21 7.08 16 32 H 0.15 2.33 6.40 -52.49 -0.34 1.99 16 33 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -27.61 334.13 -9.77 -37.37 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -3.73 Total: 13.61 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -3.60 Total: -5.88 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.23 Total: -52.14 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -9.99 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -2.75 Total: -3.62 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.61 -9.77 -37.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023016122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.292 kcal (2) G-P(sol) polarization free energy of solvation -27.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds