Wall clock time and date at job start Tue Mar 31 2020 14:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00354 * 2 1 4 4 H 1.48502 * 109.47267 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47234 * 299.99541 * 3 2 1 6 6 H 1.48496 * 109.47557 * 59.99680 * 3 2 1 7 7 C 1.38816 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99895 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99482 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99324 * 179.97438 * 9 7 2 11 11 H 1.08991 * 112.91460 * 314.87081 * 10 9 7 12 12 C 1.53781 * 113.61274 * 86.12648 * 10 9 7 13 13 C 1.53782 * 87.08367 * 89.11044 * 12 10 9 14 14 H 1.09006 * 113.61485 * 139.97828 * 13 12 10 15 15 N 1.46494 * 113.61740 * 270.80067 * 13 12 10 16 16 C 1.34770 * 120.00277 * 201.65685 * 15 13 12 17 17 O 1.21556 * 120.00127 * 0.02562 * 16 15 13 18 18 C 1.47778 * 120.00115 * 179.97438 * 16 15 13 19 19 C 1.39630 * 120.14662 * 359.73655 * 18 16 15 20 20 C 1.37903 * 119.88529 * 179.73762 * 19 18 16 21 21 C 1.38402 * 120.19971 * 0.51040 * 20 19 18 22 22 C 1.38370 * 120.30146 * 359.76168 * 21 20 19 23 23 Cl 1.73609 * 119.94733 * 180.02562 * 22 21 20 24 24 C 1.38269 * 120.10545 * 359.97438 * 22 21 20 25 25 Cl 1.73605 * 120.09782 * 179.97438 * 24 22 21 26 26 C 1.53786 * 87.08035 * 25.43533 * 13 12 10 27 27 H 0.97000 * 119.99821 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00290 * 0.02562 * 9 7 2 29 29 H 1.08996 * 113.61313 * 334.56545 * 12 10 9 30 30 H 1.09002 * 113.61570 * 203.65865 * 12 10 9 31 31 H 0.97008 * 119.99917 * 21.66335 * 15 13 12 32 32 H 1.07994 * 120.05988 * 359.97438 * 19 18 16 33 33 H 1.08002 * 119.90104 * 180.24608 * 20 19 18 34 34 H 1.07998 * 119.85300 * 179.74158 * 21 20 19 35 35 H 1.08997 * 113.61548 * 89.11595 * 26 13 12 36 36 H 1.08997 * 113.61326 * 219.93611 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0016 11 1 2.8829 -3.6705 -0.7105 12 6 2.4494 -4.1420 1.4074 13 6 1.0924 -4.8641 1.4505 14 1 1.1380 -5.8525 1.9079 15 7 0.0056 -4.0397 1.9846 16 6 -1.0993 -4.6247 2.4877 17 8 -1.1940 -5.8365 2.4989 18 6 -2.1954 -3.7931 3.0270 19 6 -2.0871 -2.4010 3.0218 20 6 -3.1155 -1.6299 3.5214 21 6 -4.2498 -2.2321 4.0376 22 6 -4.3631 -3.6110 4.0519 23 17 -5.7903 -4.3566 4.7009 24 6 -3.3419 -4.3961 3.5492 25 17 -3.4840 -6.1262 3.5678 26 6 1.1480 -4.8935 -0.0861 27 1 -0.4850 0.8401 -0.0004 28 1 0.3554 -2.3880 0.0016 29 1 2.5394 -3.3378 2.1375 30 1 3.3043 -4.8183 1.4135 31 1 0.0812 -3.0726 1.9760 32 1 -1.2012 -1.9288 2.6237 33 1 -3.0337 -0.5530 3.5139 34 1 -5.0500 -1.6229 4.4312 35 1 1.6470 -5.7751 -0.4882 36 1 0.1870 -4.6972 -0.5616 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023016122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:11 Heat of formation + Delta-G solvation = 6.253417 kcal Electronic energy + Delta-G solvation = -23219.364604 eV Core-core repulsion = 19562.985605 eV Total energy + Delta-G solvation = -3656.378998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.56399 -40.26327 -38.97790 -37.56534 -37.49656 -35.44671 -34.27913 -32.33096 -31.77323 -31.46291 -26.74422 -26.29681 -25.55434 -24.07202 -23.52423 -21.65173 -20.36861 -19.31370 -19.00924 -17.65775 -17.21207 -16.76343 -16.54537 -16.37921 -16.17683 -15.72062 -15.43744 -15.26817 -15.04707 -14.78766 -14.62876 -13.37561 -13.33208 -13.22238 -13.07512 -12.91002 -12.85134 -12.76765 -12.57994 -12.48259 -12.36501 -12.06490 -11.92376 -11.86726 -11.66410 -11.05527 -10.81171 -10.65045 -10.22598 -9.89649 -9.83379 -8.95355 -7.89376 -5.17889 -0.48922 -0.15880 0.72933 1.11452 1.51708 1.55343 1.62110 1.67825 2.12258 2.51667 2.60050 3.41665 3.44719 3.67729 3.73333 3.80128 3.87864 3.98726 4.09578 4.16949 4.22735 4.33103 4.45117 4.76078 4.87122 4.91956 4.94536 4.99955 5.09011 5.16959 5.25797 5.39938 5.43487 5.58421 5.73181 6.33657 6.52704 7.14617 7.40187 8.11072 8.37060 9.32895 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014125 B = 0.004068 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.829534 B = 6881.444439 C = 8616.126090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.059 4.059 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.301 1.301 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.074 0.926 9 N -0.719 5.719 10 C 0.145 3.855 11 H 0.055 0.945 12 C -0.160 4.160 13 C 0.125 3.875 14 H 0.097 0.903 15 N -0.694 5.694 16 C 0.550 3.450 17 O -0.549 6.549 18 C -0.136 4.136 19 C -0.064 4.064 20 C -0.100 4.100 21 C -0.061 4.061 22 C -0.051 4.051 23 Cl -0.040 7.040 24 C 0.001 3.999 25 Cl -0.029 7.029 26 C -0.151 4.151 27 H 0.252 0.748 28 H 0.375 0.625 29 H 0.059 0.941 30 H 0.114 0.886 31 H 0.409 0.591 32 H 0.139 0.861 33 H 0.171 0.829 34 H 0.181 0.819 35 H 0.118 0.882 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.054 -6.072 9.235 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.252 4.252 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.228 1.228 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.092 0.908 9 N -0.360 5.360 10 C 0.036 3.964 11 H 0.073 0.927 12 C -0.201 4.201 13 C 0.020 3.980 14 H 0.115 0.885 15 N -0.346 5.346 16 C 0.337 3.663 17 O -0.428 6.428 18 C -0.140 4.140 19 C -0.084 4.084 20 C -0.118 4.118 21 C -0.080 4.080 22 C -0.079 4.079 23 Cl -0.011 7.011 24 C -0.028 4.028 25 Cl 0.000 7.000 26 C -0.190 4.190 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.077 0.923 30 H 0.133 0.867 31 H 0.248 0.752 32 H 0.156 0.844 33 H 0.188 0.812 34 H 0.198 0.802 35 H 0.137 0.863 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.083 -7.037 9.280 13.631 hybrid contribution -0.009 1.204 -0.232 1.226 sum -7.092 -5.833 9.048 12.891 Atomic orbital electron populations 1.69759 1.05945 1.25927 1.59090 1.25312 0.96267 1.00074 1.03561 0.85250 0.78226 0.80808 0.76440 1.19820 1.22826 1.21904 1.19550 0.91448 0.84822 1.41331 0.90850 1.42350 1.05239 1.00347 1.88053 1.21460 0.94478 0.85217 0.95268 0.92690 1.23945 0.95895 1.00081 1.00129 1.21822 0.86998 0.94844 0.94366 0.88516 1.45865 1.17093 1.11307 1.60370 1.18256 0.82501 0.87494 0.78034 1.90797 1.80131 1.14171 1.57747 1.19745 0.94907 0.94501 1.04841 1.21677 1.00368 0.91120 0.95190 1.21524 0.91666 1.02321 0.96254 1.21630 0.99203 0.90986 0.96177 1.20816 0.89756 0.93666 1.03677 1.98384 1.35997 1.82506 1.84240 1.20932 0.94459 0.86830 1.00573 1.98404 1.97478 1.07572 1.96497 1.23712 0.99993 0.99320 0.96009 0.93859 0.79155 0.92255 0.86739 0.75150 0.84374 0.81163 0.80188 0.86331 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -51.34 13.06 21.65 0.28 -51.06 16 2 C -0.06 -3.02 5.50 84.86 0.47 -2.55 16 3 Si 0.96 42.33 29.55 68.60 2.03 44.36 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.24 -11.95 9.99 84.03 0.84 -11.11 16 8 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 9 N -0.72 -32.19 4.41 -320.44 -1.41 -33.60 16 10 C 0.15 5.19 4.54 45.52 0.21 5.40 16 11 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 12 C -0.16 -4.87 7.61 31.12 0.24 -4.63 16 13 C 0.12 3.95 4.27 45.52 0.19 4.14 16 14 H 0.10 2.98 7.55 -2.38 -0.02 2.96 16 15 N -0.69 -23.79 4.90 -442.98 -2.17 -25.96 16 16 C 0.55 19.46 7.77 86.77 0.67 20.13 16 17 O -0.55 -21.31 13.61 -3.89 -0.05 -21.36 16 18 C -0.14 -4.29 5.88 -20.07 -0.12 -4.40 16 19 C -0.06 -1.83 9.54 22.53 0.21 -1.61 16 20 C -0.10 -2.17 10.03 22.23 0.22 -1.95 16 21 C -0.06 -1.19 9.82 22.34 0.22 -0.97 16 22 C -0.05 -1.24 6.32 22.31 0.14 -1.10 16 23 Cl -0.04 -0.87 27.96 -2.72 -0.08 -0.94 16 24 C 0.00 0.03 6.36 22.62 0.14 0.17 16 25 Cl -0.03 -0.90 25.02 -2.72 -0.07 -0.97 16 26 C -0.15 -4.74 7.57 31.13 0.24 -4.50 16 27 H 0.25 13.21 8.31 -92.71 -0.77 12.44 16 28 H 0.38 17.98 6.98 -92.71 -0.65 17.33 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.41 14.86 5.22 -92.70 -0.48 14.38 16 32 H 0.14 4.34 6.40 -2.91 -0.02 4.33 16 33 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 34 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -59.11 334.13 2.22 -56.89 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: 0.02 Total: 35.64 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 3.68 Total: -3.00 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -3.30 Total: -110.61 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.05 Total: -21.36 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.14 Total: -1.91 kcal Total: -59.11 2.22 -56.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023016122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.144 kcal (2) G-P(sol) polarization free energy of solvation -59.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds