Wall clock time and date at job start Tue Mar 31 2020 14:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00235 * 2 1 4 4 H 1.48502 * 109.47051 * 270.00180 * 3 2 1 5 5 H 1.48502 * 109.47063 * 29.99963 * 3 2 1 6 6 H 1.48496 * 109.47065 * 150.00135 * 3 2 1 7 7 C 1.38807 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00103 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00363 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00378 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.84760 * 336.18941 * 10 9 7 12 12 C 1.53773 * 113.69408 * 107.46196 * 10 9 7 13 13 C 1.53783 * 87.07964 * 139.99351 * 12 10 9 14 14 H 1.09002 * 113.69361 * 89.13233 * 13 12 10 15 15 N 1.46508 * 113.61151 * 220.01920 * 13 12 10 16 16 C 1.34776 * 120.00064 * 252.49874 * 15 13 12 17 17 O 1.21567 * 119.99648 * 359.97438 * 16 15 13 18 18 C 1.47772 * 120.00176 * 180.02562 * 16 15 13 19 19 C 1.39610 * 120.14897 * 0.27443 * 18 16 15 20 20 C 1.38012 * 119.85307 * 180.27480 * 19 18 16 21 21 Cl 1.73595 * 119.92699 * 179.72350 * 20 19 18 22 22 C 1.38534 * 120.15583 * 359.74774 * 20 19 18 23 23 C 1.38253 * 120.29893 * 359.95382 * 22 20 19 24 24 C 1.38163 * 120.14908 * 0.03992 * 23 22 20 25 25 Cl 1.73599 * 120.07866 * 179.97438 * 24 23 22 26 26 C 1.53777 * 87.08190 * 334.56490 * 13 12 10 27 27 H 0.97005 * 119.99445 * 359.97438 * 1 2 3 28 28 H 0.97009 * 120.00028 * 359.97438 * 9 7 2 29 29 H 1.09003 * 113.61503 * 25.44598 * 12 10 9 30 30 H 1.08998 * 113.61360 * 254.54162 * 12 10 9 31 31 H 0.96996 * 120.00025 * 72.49443 * 15 13 12 32 32 H 1.08002 * 120.07870 * 0.02562 * 19 18 16 33 33 H 1.07994 * 119.85120 * 179.97438 * 22 20 19 34 34 H 1.08003 * 119.92388 * 180.02562 * 23 22 20 35 35 H 1.09006 * 113.61136 * 139.98248 * 26 13 12 36 36 H 1.08995 * 113.61655 * 270.88604 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 3.0657 -3.5641 -0.4031 12 6 1.9998 -4.4027 1.3452 13 6 1.8491 -5.6979 0.5300 14 1 2.7991 -6.1644 0.2692 15 7 0.8893 -6.6443 1.1041 16 6 1.3277 -7.7717 1.6984 17 8 2.5196 -8.0035 1.7576 18 6 0.3596 -8.7265 2.2770 19 6 -1.0102 -8.4666 2.2047 20 6 -1.9087 -9.3598 2.7521 21 17 -3.6120 -9.0350 2.6697 22 6 -1.4545 -10.5147 3.3678 23 6 -0.0998 -10.7814 3.4375 24 6 0.8107 -9.8960 2.8935 25 17 2.5114 -10.2323 2.9827 26 6 1.2603 -4.8290 -0.5939 27 1 -0.4849 0.8401 0.0004 28 1 0.3554 -2.3880 0.0005 29 1 1.1216 -4.1581 1.9428 30 1 2.9281 -4.3504 1.9141 31 1 -0.0617 -6.4594 1.0566 32 1 -1.3659 -7.5667 1.7250 33 1 -2.1619 -11.2100 3.7949 34 1 0.2476 -11.6839 3.9185 35 1 1.5916 -5.1210 -1.5905 36 1 0.1800 -4.7010 -0.5265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023017533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:15 Heat of formation + Delta-G solvation = 17.205277 kcal Electronic energy + Delta-G solvation = -22111.035970 eV Core-core repulsion = 18455.131880 eV Total energy + Delta-G solvation = -3655.904090 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.58910 -39.16517 -37.84138 -37.02963 -36.47986 -34.20855 -33.01994 -31.61015 -30.92799 -29.81483 -25.25982 -25.15369 -24.11056 -23.22643 -22.02684 -20.60812 -19.55279 -18.32813 -17.14529 -16.94135 -16.50268 -15.81249 -15.67451 -15.20151 -14.76710 -14.58044 -14.47311 -13.93105 -13.88432 -13.06672 -12.93361 -12.72783 -12.67053 -12.41899 -12.15334 -11.95065 -11.56655 -11.32537 -11.29045 -11.27523 -10.93884 -10.61390 -10.50344 -10.35318 -10.05568 -9.71124 -9.70754 -9.55781 -9.08180 -8.93224 -8.78750 -7.00857 -5.82125 -3.11057 0.18054 0.48422 1.53951 1.85407 2.46478 3.05845 3.29428 3.41517 3.47214 3.48607 4.08407 4.16714 4.53968 4.56745 4.62468 4.81170 4.98547 5.12779 5.19275 5.22004 5.34562 5.45191 5.49035 5.54717 5.83711 5.90537 5.90589 6.08405 6.22298 6.27733 6.43486 6.58948 6.69424 7.02273 7.49550 7.67249 8.14191 8.36374 9.47833 10.04049 10.38548 11.40252 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015350 B = 0.002651 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.655313 B =10560.639780 C =12038.314581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.080 0.920 12 C -0.176 4.176 13 C 0.119 3.881 14 H 0.112 0.888 15 N -0.706 5.706 16 C 0.551 3.449 17 O -0.514 6.514 18 C -0.112 4.112 19 C -0.067 4.067 20 C -0.042 4.042 21 Cl -0.054 7.054 22 C -0.077 4.077 23 C -0.109 4.109 24 C 0.014 3.986 25 Cl -0.020 7.020 26 C -0.159 4.159 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.397 0.603 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.068 0.932 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.791 -25.159 6.236 26.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.098 0.902 12 C -0.218 4.218 13 C 0.015 3.985 14 H 0.130 0.870 15 N -0.357 5.357 16 C 0.336 3.664 17 O -0.390 6.390 18 C -0.117 4.117 19 C -0.086 4.086 20 C -0.069 4.069 21 Cl -0.025 7.025 22 C -0.096 4.096 23 C -0.128 4.128 24 C -0.014 4.014 25 Cl 0.009 6.991 26 C -0.199 4.199 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.233 0.767 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.086 0.914 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.790 -25.111 6.250 26.153 hybrid contribution -0.562 1.008 0.086 1.157 sum -4.351 -24.102 6.336 25.298 Atomic orbital electron populations 1.69660 1.05152 1.25793 1.57482 1.24764 0.95539 0.97817 1.02721 0.86179 0.78719 0.83692 0.77552 1.21649 1.21757 1.20666 1.19315 0.91160 0.84131 1.42952 0.90969 1.42355 1.05685 0.99765 1.86976 1.21342 0.95515 0.84923 0.92594 0.90155 1.24345 1.01957 0.94951 1.00570 1.22564 0.93158 0.87251 0.95570 0.86981 1.45999 1.10642 1.21085 1.57970 1.17949 0.87988 0.81461 0.78973 1.90874 1.15650 1.75395 1.57113 1.19872 0.93317 0.95969 1.02498 1.21236 0.90765 0.99129 0.97497 1.20867 0.86061 0.97039 1.02910 1.98411 1.11701 1.95276 1.97108 1.21210 0.95598 0.95638 0.97155 1.21059 0.91528 0.99880 1.00293 1.21149 0.87839 0.94412 0.97997 1.98441 1.10137 1.94268 1.96211 1.23880 1.01229 0.97294 0.97490 0.93440 0.78090 0.90184 0.92102 0.76721 0.83533 0.83524 0.83299 0.91359 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.67 9.97 -15.06 -0.15 -6.82 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.71 -17.24 5.40 -52.64 -0.28 -17.53 16 10 C 0.17 3.21 4.48 -67.12 -0.30 2.91 16 11 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 12 C -0.18 -3.00 7.68 -25.92 -0.20 -3.20 16 13 C 0.12 1.72 4.24 -67.11 -0.28 1.43 16 14 H 0.11 1.68 7.46 -51.93 -0.39 1.30 16 15 N -0.71 -8.84 5.31 -53.98 -0.29 -9.13 16 16 C 0.55 7.43 7.77 -12.36 -0.10 7.33 16 17 O -0.51 -8.41 13.57 5.31 0.07 -8.34 16 18 C -0.11 -1.23 5.88 -104.95 -0.62 -1.85 16 19 C -0.07 -0.59 9.32 -39.15 -0.36 -0.96 16 20 C -0.04 -0.33 6.31 -39.55 -0.25 -0.58 16 21 Cl -0.05 -0.42 28.95 -51.86 -1.50 -1.92 16 22 C -0.08 -0.51 9.82 -39.47 -0.39 -0.90 16 23 C -0.11 -0.80 9.82 -39.60 -0.39 -1.19 16 24 C 0.01 0.15 6.35 -39.07 -0.25 -0.10 16 25 Cl -0.02 -0.24 26.02 -51.86 -1.35 -1.59 16 26 C -0.16 -2.41 7.58 -25.92 -0.20 -2.61 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.39 9.84 7.92 -40.82 -0.32 9.52 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.40 4.08 6.76 -40.82 -0.28 3.80 16 32 H 0.15 1.10 6.41 -52.49 -0.34 0.76 16 33 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.23 8.09 -51.93 -0.42 0.80 16 LS Contribution 339.31 15.07 5.11 5.11 Total: -1.00 -31.45 339.31 -9.94 -41.38 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -3.82 Total: 8.81 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -3.58 Total: -6.97 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.15 Total: -53.60 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.07 Total: -8.34 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -2.85 Total: -3.51 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.45 -9.94 -41.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023017533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.588 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds