Wall clock time and date at job start Tue Mar 31 2020 14:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00235 * 2 1 4 4 H 1.48502 * 109.47051 * 270.00180 * 3 2 1 5 5 H 1.48502 * 109.47063 * 29.99963 * 3 2 1 6 6 H 1.48496 * 109.47065 * 150.00135 * 3 2 1 7 7 C 1.38807 * 119.99576 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00103 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00363 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00378 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.84760 * 336.18941 * 10 9 7 12 12 C 1.53773 * 113.69408 * 107.46196 * 10 9 7 13 13 C 1.53783 * 87.07964 * 139.99351 * 12 10 9 14 14 H 1.09002 * 113.69361 * 89.13233 * 13 12 10 15 15 N 1.46508 * 113.61151 * 220.01920 * 13 12 10 16 16 C 1.34776 * 120.00064 * 252.49874 * 15 13 12 17 17 O 1.21567 * 119.99648 * 359.97438 * 16 15 13 18 18 C 1.47772 * 120.00176 * 180.02562 * 16 15 13 19 19 C 1.39610 * 120.14897 * 0.27443 * 18 16 15 20 20 C 1.38012 * 119.85307 * 180.27480 * 19 18 16 21 21 Cl 1.73595 * 119.92699 * 179.72350 * 20 19 18 22 22 C 1.38534 * 120.15583 * 359.74774 * 20 19 18 23 23 C 1.38253 * 120.29893 * 359.95382 * 22 20 19 24 24 C 1.38163 * 120.14908 * 0.03992 * 23 22 20 25 25 Cl 1.73599 * 120.07866 * 179.97438 * 24 23 22 26 26 C 1.53777 * 87.08190 * 334.56490 * 13 12 10 27 27 H 0.97005 * 119.99445 * 359.97438 * 1 2 3 28 28 H 0.97009 * 120.00028 * 359.97438 * 9 7 2 29 29 H 1.09003 * 113.61503 * 25.44598 * 12 10 9 30 30 H 1.08998 * 113.61360 * 254.54162 * 12 10 9 31 31 H 0.96996 * 120.00025 * 72.49443 * 15 13 12 32 32 H 1.08002 * 120.07870 * 0.02562 * 19 18 16 33 33 H 1.07994 * 119.85120 * 179.97438 * 22 20 19 34 34 H 1.08003 * 119.92388 * 180.02562 * 23 22 20 35 35 H 1.09006 * 113.61136 * 139.98248 * 26 13 12 36 36 H 1.08995 * 113.61655 * 270.88604 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 3.0657 -3.5641 -0.4031 12 6 1.9998 -4.4027 1.3452 13 6 1.8491 -5.6979 0.5300 14 1 2.7991 -6.1644 0.2692 15 7 0.8893 -6.6443 1.1041 16 6 1.3277 -7.7717 1.6984 17 8 2.5196 -8.0035 1.7576 18 6 0.3596 -8.7265 2.2770 19 6 -1.0102 -8.4666 2.2047 20 6 -1.9087 -9.3598 2.7521 21 17 -3.6120 -9.0350 2.6697 22 6 -1.4545 -10.5147 3.3678 23 6 -0.0998 -10.7814 3.4375 24 6 0.8107 -9.8960 2.8935 25 17 2.5114 -10.2323 2.9827 26 6 1.2603 -4.8290 -0.5939 27 1 -0.4849 0.8401 0.0004 28 1 0.3554 -2.3880 0.0005 29 1 1.1216 -4.1581 1.9428 30 1 2.9281 -4.3504 1.9141 31 1 -0.0617 -6.4594 1.0566 32 1 -1.3659 -7.5667 1.7250 33 1 -2.1619 -11.2100 3.7949 34 1 0.2476 -11.6839 3.9185 35 1 1.5916 -5.1210 -1.5905 36 1 0.1800 -4.7010 -0.5265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023017533.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:14 Heat of formation + Delta-G solvation = -1.980246 kcal Electronic energy + Delta-G solvation = -22111.867917 eV Core-core repulsion = 18455.131880 eV Total energy + Delta-G solvation = -3656.736037 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.52516 -40.18106 -39.01495 -37.75040 -37.20612 -35.80206 -34.46266 -32.59580 -31.60955 -31.55418 -26.67398 -26.49926 -25.45327 -24.09126 -23.21962 -21.66640 -20.89442 -19.42903 -18.93850 -17.86087 -17.39460 -16.88462 -16.50488 -16.27835 -16.15499 -15.95582 -15.51615 -15.04946 -14.93435 -14.72576 -14.30971 -13.65357 -13.39635 -13.34507 -13.29998 -13.17105 -13.06157 -12.82201 -12.42279 -12.23349 -12.12210 -12.05492 -12.00345 -11.96415 -11.71866 -11.48847 -10.87015 -10.64389 -10.39243 -10.01512 -9.72841 -8.98218 -7.95068 -5.22889 -0.54169 -0.15848 0.88822 1.12180 1.48555 1.49225 1.57742 1.64173 2.05715 2.46253 2.57291 3.36575 3.39879 3.47740 3.70911 3.84952 3.89179 3.93706 3.99021 4.14801 4.27799 4.32062 4.52463 4.56187 4.72971 4.86128 4.88951 4.90945 4.96231 5.12383 5.16375 5.31540 5.35448 5.51119 5.66224 6.27586 6.47161 7.12352 7.34288 8.09862 8.33239 9.28037 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015350 B = 0.002651 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.655313 B =10560.639780 C =12038.314581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.245 4.245 8 H 0.076 0.924 9 N -0.723 5.723 10 C 0.150 3.850 11 H 0.079 0.921 12 C -0.170 4.170 13 C 0.139 3.861 14 H 0.111 0.889 15 N -0.700 5.700 16 C 0.549 3.451 17 O -0.548 6.548 18 C -0.131 4.131 19 C -0.066 4.066 20 C -0.046 4.046 21 Cl -0.050 7.050 22 C -0.061 4.061 23 C -0.100 4.100 24 C 0.000 4.000 25 Cl -0.041 7.041 26 C -0.140 4.140 27 H 0.251 0.749 28 H 0.376 0.624 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.410 0.590 32 H 0.157 0.843 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.084 0.916 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 -26.870 6.636 28.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.361 5.361 10 C 0.039 3.961 11 H 0.097 0.903 12 C -0.212 4.212 13 C 0.034 3.966 14 H 0.129 0.871 15 N -0.351 5.351 16 C 0.337 3.663 17 O -0.426 6.426 18 C -0.136 4.136 19 C -0.085 4.085 20 C -0.073 4.073 21 Cl -0.021 7.021 22 C -0.080 4.080 23 C -0.119 4.119 24 C -0.028 4.028 25 Cl -0.011 7.011 26 C -0.180 4.180 27 H 0.060 0.940 28 H 0.208 0.792 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.247 0.753 32 H 0.174 0.826 33 H 0.196 0.804 34 H 0.193 0.807 35 H 0.102 0.898 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.504 -26.868 6.652 28.043 hybrid contribution -0.379 1.417 0.003 1.467 sum -4.884 -25.451 6.655 26.756 Atomic orbital electron populations 1.69800 1.06482 1.26047 1.59519 1.25521 0.96378 1.00963 1.03757 0.85191 0.77721 0.79740 0.77433 1.21356 1.22293 1.19641 1.19692 0.91550 0.85401 1.41003 0.90644 1.42498 1.05396 1.00765 1.87436 1.21662 0.95789 0.84133 0.94470 0.90269 1.24168 1.01253 0.96287 0.99483 1.22188 0.93559 0.86650 0.94242 0.87127 1.45848 1.10971 1.20601 1.57690 1.18343 0.88061 0.81618 0.78311 1.90855 1.17189 1.76168 1.58426 1.19672 0.93532 0.96106 1.04257 1.21309 0.90037 0.99755 0.97422 1.20989 0.86118 0.97339 1.02874 1.98419 1.11294 1.95315 1.97086 1.21588 0.95759 0.95244 0.95412 1.21355 0.91269 1.00002 0.99269 1.21382 0.87290 0.95092 0.99040 1.98431 1.12000 1.94342 1.96372 1.23682 1.01046 0.94876 0.98355 0.94011 0.79172 0.91083 0.92754 0.75297 0.82569 0.80387 0.80655 0.89784 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.27 13.06 21.65 0.28 -57.98 16 2 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 3 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.24 -13.40 9.97 84.03 0.84 -12.56 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 9 N -0.72 -35.36 5.40 -320.45 -1.73 -37.10 16 10 C 0.15 5.66 4.48 45.52 0.20 5.86 16 11 H 0.08 2.99 8.10 -2.39 -0.02 2.97 16 12 C -0.17 -5.77 7.68 31.12 0.24 -5.53 16 13 C 0.14 3.89 4.24 45.52 0.19 4.08 16 14 H 0.11 3.23 7.46 -2.39 -0.02 3.21 16 15 N -0.70 -16.81 5.31 -442.96 -2.35 -19.16 16 16 C 0.55 14.49 7.77 86.77 0.67 15.17 16 17 O -0.55 -17.92 13.57 -3.93 -0.05 -17.98 16 18 C -0.13 -2.73 5.88 -20.07 -0.12 -2.85 16 19 C -0.07 -1.05 9.32 22.55 0.21 -0.84 16 20 C -0.05 -0.62 6.31 22.29 0.14 -0.48 16 21 Cl -0.05 -0.66 28.95 -2.72 -0.08 -0.74 16 22 C -0.06 -0.60 9.82 22.34 0.22 -0.38 16 23 C -0.10 -1.19 9.82 22.26 0.22 -0.97 16 24 C 0.00 0.00 6.35 22.60 0.14 0.15 16 25 Cl -0.04 -0.94 26.02 -2.72 -0.07 -1.01 16 26 C -0.14 -4.07 7.58 31.12 0.24 -3.84 16 27 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 28 H 0.38 19.48 7.92 -92.70 -0.73 18.74 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.41 7.83 6.76 -92.71 -0.63 7.20 16 32 H 0.16 2.06 6.41 -2.91 -0.02 2.04 16 33 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 34 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.09 2.50 8.09 -2.39 -0.02 2.48 16 Total: -1.00 -68.17 339.31 1.48 -66.70 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -0.21 Total: 25.35 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 3.66 Total: -5.92 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -3.80 Total: -114.23 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.05 Total: -17.98 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.15 Total: -1.75 kcal Total: -68.17 1.48 -66.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023017533.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.715 kcal (2) G-P(sol) polarization free energy of solvation -68.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds