Wall clock time and date at job start Tue Mar 31 2020 14:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.84892 * 23.79955 * 10 9 7 12 12 C 1.53780 * 113.61668 * 154.99448 * 10 9 7 13 13 C 1.53781 * 87.08232 * 139.97914 * 12 10 9 14 14 H 1.08998 * 113.61338 * 89.11927 * 13 12 10 15 15 N 1.46496 * 113.61648 * 219.93710 * 13 12 10 16 16 C 1.34778 * 120.00307 * 204.99640 * 15 13 12 17 17 O 1.21570 * 119.99821 * 0.02562 * 16 15 13 18 18 C 1.47689 * 120.00367 * 180.02562 * 16 15 13 19 19 C 1.39740 * 120.17047 * 89.73010 * 18 16 15 20 20 Cl 1.73599 * 120.08111 * 359.97438 * 19 18 16 21 21 C 1.38097 * 119.83081 * 179.74811 * 19 18 16 22 22 C 1.38325 * 120.16522 * 0.52358 * 21 19 18 23 23 C 1.38333 * 120.34323 * 359.73197 * 22 21 19 24 24 C 1.38091 * 120.16681 * 0.02562 * 23 22 21 25 25 Cl 1.73595 * 120.08576 * 180.02562 * 24 23 22 26 26 C 1.53782 * 113.61256 * 252.49493 * 10 9 7 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.08994 * 113.61573 * 254.52493 * 12 10 9 30 30 H 1.09004 * 113.61217 * 25.35286 * 12 10 9 31 31 H 0.97005 * 119.99972 * 25.00442 * 15 13 12 32 32 H 1.07999 * 119.91520 * 180.23118 * 21 19 18 33 33 H 1.08004 * 119.82997 * 179.74360 * 22 21 19 34 34 H 1.07998 * 119.91765 * 180.02562 * 23 22 21 35 35 H 1.08999 * 113.61640 * 334.56560 * 26 10 9 36 36 H 1.08997 * 113.61899 * 105.47187 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0652 -3.5640 0.4046 12 6 1.2597 -4.8290 0.5929 13 6 1.8482 -5.6974 -0.5316 14 1 2.7986 -6.1634 -0.2714 15 7 0.8887 -6.6441 -1.1054 16 6 1.3274 -7.7711 -1.7002 17 8 2.5194 -8.0023 -1.7602 18 6 0.3601 -8.7252 -2.2791 19 6 -0.0447 -8.5944 -3.6102 20 17 0.5879 -7.3081 -4.5896 21 6 -0.9455 -9.4936 -4.1459 22 6 -1.4553 -10.5154 -3.3653 23 6 -1.0635 -10.6484 -2.0452 24 6 -0.1597 -9.7600 -1.4968 25 17 0.3309 -9.9293 0.1598 26 6 1.9999 -4.4015 -1.3458 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 1.5905 -5.1219 1.5892 30 1 0.1793 -4.6998 0.5264 31 1 -0.0625 -6.4597 -1.0573 32 1 -1.2564 -9.3959 -5.1756 33 1 -2.1627 -11.2132 -3.7886 34 1 -1.4656 -11.4490 -1.4421 35 1 1.1221 -4.1561 -1.9434 36 1 2.9284 -4.3494 -1.9144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023017913.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:18 Heat of formation + Delta-G solvation = 9.226078 kcal Electronic energy + Delta-G solvation = -22465.181719 eV Core-core repulsion = 18808.931625 eV Total energy + Delta-G solvation = -3656.250094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57319 -39.21894 -37.84348 -37.16898 -36.66646 -34.34108 -33.04027 -31.59448 -31.20557 -29.55561 -25.21219 -25.15166 -23.80833 -23.30744 -22.26943 -20.68834 -19.57389 -18.23179 -17.43961 -17.10386 -16.62549 -16.35633 -15.48249 -14.95333 -14.87434 -14.53176 -14.20049 -14.12790 -13.80042 -13.65390 -13.01585 -12.82970 -12.73306 -12.36784 -12.14618 -12.01104 -11.54072 -11.49644 -11.32144 -11.04443 -10.88166 -10.71321 -10.51322 -10.30344 -10.01819 -9.94315 -9.46029 -9.25423 -9.17945 -8.94410 -8.83384 -7.06449 -6.13586 -3.13649 0.33848 0.44436 1.37847 1.81033 2.39544 2.79272 3.08119 3.51383 3.55933 3.69943 4.18834 4.32205 4.46043 4.58513 4.66583 4.79763 4.87024 4.98011 5.14022 5.28000 5.41295 5.44681 5.47980 5.61559 5.76003 5.81633 5.92953 6.01370 6.14847 6.21681 6.36305 6.54196 6.63582 6.96136 7.45013 7.79863 8.07696 8.72312 9.18399 10.04819 10.19344 11.34591 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.002881 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.130860 B = 9716.564076 C =10444.141493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.044 4.044 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.335 4.335 8 H 0.067 0.933 9 N -0.721 5.721 10 C 0.175 3.825 11 H 0.082 0.918 12 C -0.159 4.159 13 C 0.120 3.880 14 H 0.112 0.888 15 N -0.698 5.698 16 C 0.564 3.436 17 O -0.519 6.519 18 C -0.109 4.109 19 C 0.001 3.999 20 Cl -0.035 7.035 21 C -0.108 4.108 22 C -0.081 4.081 23 C -0.109 4.109 24 C 0.001 3.999 25 Cl -0.041 7.041 26 C -0.174 4.174 27 H 0.255 0.745 28 H 0.368 0.632 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.401 0.599 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.079 0.921 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.985 -25.033 -6.241 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.242 4.242 3 Si 0.913 3.087 4 H -0.223 1.223 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.466 4.466 8 H 0.085 0.915 9 N -0.361 5.361 10 C 0.062 3.938 11 H 0.100 0.900 12 C -0.199 4.199 13 C 0.015 3.985 14 H 0.130 0.870 15 N -0.347 5.347 16 C 0.347 3.653 17 O -0.395 6.395 18 C -0.114 4.114 19 C -0.027 4.027 20 Cl -0.006 7.006 21 C -0.127 4.127 22 C -0.100 4.100 23 C -0.127 4.127 24 C -0.027 4.027 25 Cl -0.011 7.011 26 C -0.216 4.216 27 H 0.066 0.934 28 H 0.202 0.798 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.235 0.765 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.097 0.903 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.922 -23.341 -6.193 24.465 hybrid contribution -0.548 -1.631 -0.028 1.721 sum -4.471 -24.972 -6.221 26.121 Atomic orbital electron populations 1.70864 1.06063 1.28409 1.53524 1.25799 0.97042 1.01087 1.00263 0.83198 0.73936 0.75265 0.76273 1.22261 1.22078 1.21381 1.20142 0.92175 0.85793 1.48494 0.91526 1.42360 1.04704 1.00761 1.88242 1.21283 0.95469 0.84412 0.92638 0.90046 1.23876 1.01099 0.97324 0.97586 1.22550 0.93180 0.87257 0.95488 0.87017 1.45980 1.10709 1.20654 1.57340 1.17826 0.87823 0.81280 0.78362 1.90824 1.15553 1.75650 1.57443 1.19817 1.00040 0.98190 0.93319 1.20893 0.97705 0.93307 0.90811 1.98450 1.85481 1.47651 1.69020 1.21173 0.96172 0.93924 1.01386 1.21242 0.98705 0.97227 0.92807 1.21149 0.96733 0.98858 0.95999 1.20842 0.98105 0.96486 0.87257 1.98429 1.90387 1.97030 1.15286 1.24317 1.01950 0.94893 1.00471 0.93406 0.79841 0.91307 0.90085 0.76513 0.83560 0.83534 0.83611 0.90269 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.99 13.70 55.49 0.76 -28.23 16 2 C -0.04 -1.29 5.50 -17.43 -0.10 -1.38 16 3 Si 1.08 25.97 29.92 -169.99 -5.09 20.88 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.34 -9.38 9.97 -15.06 -0.15 -9.53 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.82 5.40 -52.64 -0.28 -18.11 16 10 C 0.17 3.44 4.48 -67.12 -0.30 3.14 16 11 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 12 C -0.16 -2.51 7.58 -25.92 -0.20 -2.71 16 13 C 0.12 1.83 4.24 -67.12 -0.28 1.54 16 14 H 0.11 1.78 7.46 -51.93 -0.39 1.39 16 15 N -0.70 -9.51 5.35 -54.01 -0.29 -9.80 16 16 C 0.56 8.22 5.36 -12.40 -0.07 8.15 16 17 O -0.52 -9.38 16.71 5.30 0.09 -9.29 16 18 C -0.11 -1.30 5.64 -104.91 -0.59 -1.89 16 19 C 0.00 0.01 6.35 -39.07 -0.25 -0.24 16 20 Cl -0.04 -0.42 28.04 -51.86 -1.45 -1.88 16 21 C -0.11 -0.79 9.82 -39.60 -0.39 -1.18 16 22 C -0.08 -0.46 10.03 -39.51 -0.40 -0.86 16 23 C -0.11 -0.76 9.82 -39.60 -0.39 -1.15 16 24 C 0.00 0.01 6.35 -39.07 -0.25 -0.24 16 25 Cl -0.04 -0.43 28.04 -51.86 -1.45 -1.89 16 26 C -0.17 -3.10 7.68 -25.91 -0.20 -3.30 16 27 H 0.25 7.67 6.77 -40.82 -0.28 7.39 16 28 H 0.37 9.29 6.75 -40.82 -0.28 9.01 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.40 4.73 8.72 -40.82 -0.36 4.38 16 32 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.15 0.35 8.06 -52.48 -0.42 -0.07 16 34 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 343.62 15.07 5.18 5.18 Total: -1.00 -33.63 343.62 -9.97 -43.61 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -3.88 Total: 9.15 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -3.55 Total: -9.64 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.19 Total: -56.13 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.09 Total: 20.88 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -2.91 Total: -3.76 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.63 -9.97 -43.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023017913.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.836 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds