Wall clock time and date at job start Tue Mar 31 2020 14:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.84892 * 23.79955 * 10 9 7 12 12 C 1.53780 * 113.61668 * 154.99448 * 10 9 7 13 13 C 1.53781 * 87.08232 * 139.97914 * 12 10 9 14 14 H 1.08998 * 113.61338 * 89.11927 * 13 12 10 15 15 N 1.46496 * 113.61648 * 219.93710 * 13 12 10 16 16 C 1.34778 * 120.00307 * 204.99640 * 15 13 12 17 17 O 1.21570 * 119.99821 * 0.02562 * 16 15 13 18 18 C 1.47689 * 120.00367 * 180.02562 * 16 15 13 19 19 C 1.39740 * 120.17047 * 89.73010 * 18 16 15 20 20 Cl 1.73599 * 120.08111 * 359.97438 * 19 18 16 21 21 C 1.38097 * 119.83081 * 179.74811 * 19 18 16 22 22 C 1.38325 * 120.16522 * 0.52358 * 21 19 18 23 23 C 1.38333 * 120.34323 * 359.73197 * 22 21 19 24 24 C 1.38091 * 120.16681 * 0.02562 * 23 22 21 25 25 Cl 1.73595 * 120.08576 * 180.02562 * 24 23 22 26 26 C 1.53782 * 113.61256 * 252.49493 * 10 9 7 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.08994 * 113.61573 * 254.52493 * 12 10 9 30 30 H 1.09004 * 113.61217 * 25.35286 * 12 10 9 31 31 H 0.97005 * 119.99972 * 25.00442 * 15 13 12 32 32 H 1.07999 * 119.91520 * 180.23118 * 21 19 18 33 33 H 1.08004 * 119.82997 * 179.74360 * 22 21 19 34 34 H 1.07998 * 119.91765 * 180.02562 * 23 22 21 35 35 H 1.08999 * 113.61640 * 334.56560 * 26 10 9 36 36 H 1.08997 * 113.61899 * 105.47187 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0652 -3.5640 0.4046 12 6 1.2597 -4.8290 0.5929 13 6 1.8482 -5.6974 -0.5316 14 1 2.7986 -6.1634 -0.2714 15 7 0.8887 -6.6441 -1.1054 16 6 1.3274 -7.7711 -1.7002 17 8 2.5194 -8.0023 -1.7602 18 6 0.3601 -8.7252 -2.2791 19 6 -0.0447 -8.5944 -3.6102 20 17 0.5879 -7.3081 -4.5896 21 6 -0.9455 -9.4936 -4.1459 22 6 -1.4553 -10.5154 -3.3653 23 6 -1.0635 -10.6484 -2.0452 24 6 -0.1597 -9.7600 -1.4968 25 17 0.3309 -9.9293 0.1598 26 6 1.9999 -4.4015 -1.3458 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 1.5905 -5.1219 1.5892 30 1 0.1793 -4.6998 0.5264 31 1 -0.0625 -6.4597 -1.0573 32 1 -1.2564 -9.3959 -5.1756 33 1 -2.1627 -11.2132 -3.7886 34 1 -1.4656 -11.4490 -1.4421 35 1 1.1221 -4.1561 -1.9434 36 1 2.9284 -4.3494 -1.9144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023017913.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:17 Heat of formation + Delta-G solvation = -12.576204 kcal Electronic energy + Delta-G solvation = -22466.127137 eV Core-core repulsion = 18808.931625 eV Total energy + Delta-G solvation = -3657.195512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58109 -40.28076 -39.12066 -37.95084 -37.43322 -36.14478 -34.50237 -32.50338 -31.83790 -31.39911 -26.66970 -26.46854 -25.42423 -23.95604 -23.65333 -21.80950 -20.98568 -19.53683 -19.12424 -17.92676 -17.68705 -17.38376 -16.76950 -16.28074 -15.76171 -15.65679 -15.56385 -15.34747 -15.16960 -14.94713 -14.54844 -13.77718 -13.53296 -13.53047 -13.44090 -12.90642 -12.82753 -12.68468 -12.34262 -12.25741 -12.23223 -12.17556 -12.14415 -11.89526 -11.85221 -11.29171 -11.09386 -10.88327 -10.17921 -10.15849 -9.92699 -9.11512 -8.40376 -5.34299 -0.34452 -0.18296 0.63026 1.06246 1.28405 1.58235 1.68489 1.82708 1.95077 2.25868 2.70707 3.34679 3.37297 3.56048 3.66490 3.69211 3.80906 3.84355 4.04117 4.05741 4.18538 4.20717 4.26324 4.60099 4.74759 4.76901 4.80406 4.94546 4.98412 5.03220 5.07376 5.21966 5.43427 5.49255 5.61156 6.31355 6.49368 6.95923 7.07874 7.98172 8.09325 9.11556 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.002881 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.130860 B = 9716.564076 C =10444.141493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.103 4.103 3 Si 1.128 2.872 4 H -0.283 1.283 5 H -0.275 1.275 6 H -0.293 1.293 7 C -0.335 4.335 8 H 0.066 0.934 9 N -0.735 5.735 10 C 0.156 3.844 11 H 0.078 0.922 12 C -0.138 4.138 13 C 0.138 3.862 14 H 0.109 0.891 15 N -0.691 5.691 16 C 0.567 3.433 17 O -0.561 6.561 18 C -0.136 4.136 19 C -0.015 4.015 20 Cl -0.060 7.060 21 C -0.102 4.102 22 C -0.060 4.060 23 C -0.100 4.100 24 C -0.012 4.012 25 Cl -0.054 7.054 26 C -0.167 4.167 27 H 0.245 0.755 28 H 0.363 0.637 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.411 0.589 32 H 0.171 0.829 33 H 0.193 0.807 34 H 0.175 0.825 35 H 0.070 0.930 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.095 -27.254 -6.714 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.294 4.294 3 Si 0.953 3.047 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.220 1.220 7 C -0.466 4.466 8 H 0.084 0.916 9 N -0.374 5.374 10 C 0.046 3.954 11 H 0.096 0.904 12 C -0.178 4.178 13 C 0.033 3.967 14 H 0.127 0.873 15 N -0.341 5.341 16 C 0.353 3.647 17 O -0.439 6.439 18 C -0.140 4.140 19 C -0.043 4.043 20 Cl -0.031 7.031 21 C -0.121 4.121 22 C -0.078 4.078 23 C -0.118 4.118 24 C -0.039 4.039 25 Cl -0.025 7.025 26 C -0.209 4.209 27 H 0.056 0.944 28 H 0.195 0.805 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.247 0.753 32 H 0.189 0.811 33 H 0.210 0.790 34 H 0.192 0.808 35 H 0.088 0.912 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.032 -25.622 -6.663 26.948 hybrid contribution -0.237 -1.105 0.072 1.132 sum -5.269 -26.727 -6.591 28.027 Atomic orbital electron populations 1.70966 1.07099 1.27964 1.56226 1.27161 0.97152 1.04582 1.00534 0.82608 0.73509 0.71656 0.76898 1.21007 1.20075 1.21953 1.20467 0.92412 0.87140 1.46614 0.91588 1.42495 1.04584 1.01582 1.88774 1.21580 0.95658 0.83760 0.94433 0.90416 1.23667 1.00947 0.94791 0.98376 1.22190 0.93514 0.86680 0.94320 0.87301 1.45870 1.10914 1.20277 1.56994 1.18240 0.87790 0.81342 0.77336 1.90790 1.17558 1.76602 1.58991 1.19633 1.01216 0.98866 0.94311 1.21079 0.99109 0.93850 0.90240 1.98438 1.86058 1.49063 1.69515 1.21565 0.94661 0.93091 1.02733 1.21783 0.97748 0.96498 0.91761 1.21577 0.95093 0.98322 0.96840 1.21027 0.99205 0.96997 0.86689 1.98421 1.90701 1.97055 1.16324 1.24132 1.01168 0.96174 0.99405 0.94434 0.80487 0.89698 0.89397 0.75334 0.81121 0.79025 0.80759 0.91176 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.88 13.70 21.65 0.30 -60.58 16 2 C -0.10 -6.00 5.50 84.86 0.47 -5.54 16 3 Si 1.13 52.43 29.92 68.60 2.05 54.48 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 7 C -0.33 -18.93 9.97 84.03 0.84 -18.10 16 8 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 9 N -0.73 -36.85 5.40 -320.46 -1.73 -38.58 16 10 C 0.16 6.19 4.48 45.52 0.20 6.40 16 11 H 0.08 3.12 8.10 -2.39 -0.02 3.11 16 12 C -0.14 -4.28 7.58 31.12 0.24 -4.04 16 13 C 0.14 4.20 4.24 45.52 0.19 4.40 16 14 H 0.11 3.47 7.46 -2.39 -0.02 3.45 16 15 N -0.69 -18.74 5.35 -443.05 -2.37 -21.11 16 16 C 0.57 16.57 5.36 86.74 0.47 17.04 16 17 O -0.56 -20.66 16.71 -3.93 -0.07 -20.73 16 18 C -0.14 -3.12 5.64 -20.05 -0.11 -3.23 16 19 C -0.02 -0.30 6.35 22.60 0.14 -0.16 16 20 Cl -0.06 -1.42 28.04 -2.72 -0.08 -1.50 16 21 C -0.10 -1.16 9.82 22.26 0.22 -0.94 16 22 C -0.06 -0.39 10.03 22.31 0.22 -0.17 16 23 C -0.10 -1.02 9.82 22.26 0.22 -0.80 16 24 C -0.01 -0.21 6.35 22.60 0.14 -0.07 16 25 Cl -0.05 -1.10 28.04 -2.72 -0.08 -1.17 16 26 C -0.17 -6.03 7.68 31.12 0.24 -5.79 16 27 H 0.25 15.16 6.77 -92.71 -0.63 14.53 16 28 H 0.36 18.73 6.75 -92.71 -0.63 18.10 16 29 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.09 2.64 8.10 -2.39 -0.02 2.62 16 31 H 0.41 9.52 8.72 -92.70 -0.81 8.71 16 32 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 33 H 0.19 -0.38 8.06 -2.91 -0.02 -0.41 16 34 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -74.96 343.62 1.35 -73.60 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -0.15 Total: 26.58 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 3.48 Total: -10.99 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -3.81 Total: -120.27 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.07 Total: -20.73 kcal Atomic # 14 Polarization: 52.43 SS G_CDS: 2.05 Total: 54.48 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -0.15 Total: -2.67 kcal Total: -74.96 1.35 -73.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023017913.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.025 kcal (2) G-P(sol) polarization free energy of solvation -74.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds