Wall clock time and date at job start Tue Mar 31 2020 14:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86809 * 119.99700 * 2 1 4 4 H 1.48500 * 109.46973 * 274.98687 * 3 2 1 5 5 H 1.48500 * 109.47017 * 34.98739 * 3 2 1 6 6 H 1.48499 * 109.46841 * 154.98624 * 3 2 1 7 7 C 1.38814 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99440 * 185.06212 * 7 2 1 9 9 N 1.36933 * 119.99714 * 5.06241 * 7 2 1 10 10 C 1.47582 * 134.49000 * 173.48110 * 9 7 2 11 11 C 1.53941 * 86.11759 * 155.35970 * 10 9 7 12 12 C 1.53003 * 113.73954 * 269.15700 * 11 10 9 13 13 N 1.46508 * 109.46970 * 183.07520 * 12 11 10 14 14 C 1.34773 * 119.99872 * 179.97438 * 13 12 11 15 15 O 1.21574 * 120.00184 * 359.97438 * 14 13 12 16 16 C 1.47691 * 119.99865 * 179.97438 * 14 13 12 17 17 C 1.39748 * 120.16188 * 89.72367 * 16 14 13 18 18 Cl 1.73601 * 120.08865 * 0.02588 * 17 16 14 19 19 C 1.38099 * 119.82397 * 179.76946 * 17 16 14 20 20 C 1.38324 * 120.17208 * 0.53036 * 19 17 16 21 21 C 1.38334 * 120.34068 * 359.70096 * 20 19 17 22 22 C 1.38104 * 120.16381 * 0.04033 * 21 20 19 23 23 Cl 1.73599 * 120.08512 * 179.97438 * 22 21 20 24 24 C 1.47808 * 134.45725 * 353.35046 * 9 7 2 25 25 H 0.96995 * 119.99775 * 0.02562 * 1 2 3 26 26 H 1.08997 * 113.76639 * 41.05637 * 10 9 7 27 27 H 1.08998 * 113.76570 * 269.66126 * 10 9 7 28 28 H 1.09000 * 113.74374 * 137.95539 * 11 10 9 29 29 H 1.08997 * 109.47105 * 303.06880 * 12 11 10 30 30 H 1.08993 * 109.47283 * 63.07637 * 12 11 10 31 31 H 0.96998 * 119.99406 * 359.97438 * 13 12 11 32 32 H 1.08003 * 119.91613 * 180.27853 * 19 17 16 33 33 H 1.08000 * 119.83725 * 179.72418 * 20 19 17 34 34 H 1.07994 * 119.92319 * 180.02562 * 21 20 19 35 35 H 1.09004 * 113.77216 * 90.38247 * 24 9 7 36 36 H 1.09003 * 113.83955 * 318.91224 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.3923 2.1074 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4122 0.5920 7 6 2.0104 -1.2021 0.0005 8 1 3.0872 -1.2038 0.0831 9 7 1.3297 -2.3857 -0.1036 10 6 1.7288 -3.7985 -0.2549 11 6 0.3712 -4.1416 0.3846 12 6 0.4226 -4.2683 1.9085 13 7 -0.8951 -4.6666 2.4101 14 6 -1.0883 -4.8406 3.7325 15 8 -0.1691 -4.6674 4.5091 16 6 -2.4167 -5.2416 4.2382 17 6 -2.7403 -6.5951 4.3654 18 17 -1.5811 -7.8118 3.9300 19 6 -3.9828 -6.9622 4.8435 20 6 -4.9099 -5.9943 5.1857 21 6 -4.5987 -4.6525 5.0579 22 6 -3.3584 -4.2696 4.5863 23 17 -2.9703 -2.5852 4.4262 24 6 -0.1000 -2.7609 -0.1071 25 1 -0.4849 0.8400 -0.0004 26 1 2.5862 -4.0806 0.3562 27 1 1.8198 -4.1205 -1.2922 28 1 -0.1410 -4.9763 -0.0942 29 1 1.1598 -5.0217 2.1858 30 1 0.7021 -3.3088 2.3436 31 1 -1.6283 -4.8051 1.7903 32 1 -4.2329 -8.0078 4.9468 33 1 -5.8816 -6.2875 5.5548 34 1 -5.3274 -3.9024 5.3274 35 1 -0.5474 -2.7777 -1.1009 36 1 -0.7001 -2.2163 0.6219 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032148653.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:33 Heat of formation + Delta-G solvation = 32.815689 kcal Electronic energy + Delta-G solvation = -22841.732685 eV Core-core repulsion = 19186.505513 eV Total energy + Delta-G solvation = -3655.227172 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.32916 -38.80214 -37.83813 -36.99942 -36.47949 -34.23186 -32.20512 -31.61492 -31.04769 -28.51833 -26.11648 -24.79195 -23.93755 -23.14738 -22.22651 -20.60140 -19.04117 -17.84255 -16.89434 -16.73553 -16.48309 -16.00798 -15.30332 -14.97418 -14.70857 -14.50166 -14.14512 -14.00230 -13.71000 -13.31870 -12.71439 -12.56287 -12.54417 -12.42168 -12.05122 -11.48754 -11.36901 -11.34311 -11.10502 -11.09430 -10.99440 -10.70935 -10.47376 -10.01668 -9.80725 -9.70759 -9.40722 -9.29529 -9.09149 -8.75821 -8.73044 -6.83073 -5.74539 -3.05239 0.49784 0.59749 1.54840 1.99726 2.63377 2.95024 3.28076 3.42016 3.47386 3.49208 4.33580 4.48715 4.51832 4.62599 4.73320 4.95018 5.06122 5.22227 5.35538 5.38375 5.55630 5.59070 5.64358 5.75435 6.00954 6.07773 6.13962 6.34971 6.53167 6.62358 6.66485 6.78772 7.22740 7.30988 7.60310 7.65729 8.01339 8.30574 9.08168 9.74721 10.64077 11.43121 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016280 B = 0.003643 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.531006 B = 7683.221826 C = 8843.577156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.610 5.610 10 C 0.127 3.873 11 C -0.156 4.156 12 C 0.149 3.851 13 N -0.705 5.705 14 C 0.561 3.439 15 O -0.519 6.519 16 C -0.106 4.106 17 C 0.001 3.999 18 Cl -0.043 7.043 19 C -0.111 4.111 20 C -0.083 4.083 21 C -0.108 4.108 22 C 0.000 4.000 23 Cl -0.028 7.028 24 C 0.169 3.831 25 H 0.252 0.748 26 H 0.045 0.955 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.400 0.600 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.028 0.972 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.224 -16.193 9.088 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.337 5.337 10 C 0.001 3.999 11 C -0.176 4.176 12 C 0.027 3.973 13 N -0.355 5.355 14 C 0.344 3.656 15 O -0.394 6.394 16 C -0.111 4.111 17 C -0.027 4.027 18 Cl -0.014 7.014 19 C -0.129 4.129 20 C -0.102 4.102 21 C -0.127 4.127 22 C -0.028 4.028 23 Cl 0.001 6.999 24 C 0.044 3.956 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.234 0.766 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.046 0.954 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.330 -15.652 9.606 22.121 hybrid contribution 0.168 0.959 -0.568 1.127 sum -12.163 -14.693 9.039 21.107 Atomic orbital electron populations 1.69826 1.05007 1.25232 1.56504 1.24784 0.95629 0.97406 1.02409 0.86176 0.78875 0.83812 0.77425 1.21705 1.21760 1.20532 1.19024 0.90777 0.82152 1.43088 0.90279 1.46024 1.02229 1.00657 1.84803 1.22518 0.94145 0.86536 0.96712 1.23466 1.00406 0.99888 0.93863 1.21139 0.82141 1.01010 0.93017 1.45941 1.14584 1.68567 1.06368 1.17747 0.86675 0.78015 0.83155 1.90836 1.42274 1.50242 1.56084 1.19833 0.95613 0.91683 1.03934 1.20827 0.92078 0.88417 1.01372 1.98419 1.58404 1.53494 1.91093 1.21112 0.91391 1.01255 0.99175 1.21214 0.99629 0.91550 0.97760 1.21175 0.94982 0.97268 0.99303 1.20960 0.94224 0.86778 1.00814 1.98479 1.93987 1.11612 1.95774 1.22288 0.88228 0.87422 0.97704 0.93754 0.93672 0.94537 0.91476 0.91985 0.89729 0.76625 0.83757 0.83682 0.83627 0.95413 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.37 11.51 55.49 0.64 -26.73 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 22.54 29.56 -169.99 -5.02 17.52 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.61 -15.53 3.58 -177.70 -0.64 -16.17 16 10 C 0.13 2.56 8.51 -2.97 -0.03 2.53 16 11 C -0.16 -2.80 3.99 -89.69 -0.36 -3.16 16 12 C 0.15 2.68 5.42 -4.04 -0.02 2.66 16 13 N -0.70 -11.03 5.55 -61.30 -0.34 -11.37 16 14 C 0.56 9.30 5.36 -12.40 -0.07 9.24 16 15 O -0.52 -10.58 17.11 5.30 0.09 -10.49 16 16 C -0.11 -1.43 5.64 -104.91 -0.59 -2.02 16 17 C 0.00 0.01 6.35 -39.07 -0.25 -0.24 16 18 Cl -0.04 -0.49 28.04 -51.86 -1.45 -1.95 16 19 C -0.11 -0.87 9.82 -39.60 -0.39 -1.26 16 20 C -0.08 -0.56 10.03 -39.51 -0.40 -0.95 16 21 C -0.11 -0.94 9.82 -39.60 -0.39 -1.33 16 22 C 0.00 0.00 6.35 -39.07 -0.25 -0.25 16 23 Cl -0.03 -0.41 28.04 -51.86 -1.45 -1.86 16 24 C 0.17 3.86 6.94 -2.84 -0.02 3.84 16 25 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.87 7.98 -51.93 -0.41 1.45 16 31 H 0.40 5.35 8.46 -40.82 -0.35 5.00 16 32 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 34 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.81 7.32 -51.93 -0.38 1.43 16 LS Contribution 343.88 15.07 5.18 5.18 Total: -1.00 -33.76 343.88 -10.07 -43.84 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.07 Total: -0.31 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -3.01 Total: 2.34 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.34 Total: -54.27 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -2.91 Total: -3.81 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.76 -10.07 -43.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032148653.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.653 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds