Wall clock time and date at job start Tue Mar 31 2020 14:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86809 * 119.99700 * 2 1 4 4 H 1.48500 * 109.46973 * 274.98687 * 3 2 1 5 5 H 1.48500 * 109.47017 * 34.98739 * 3 2 1 6 6 H 1.48499 * 109.46841 * 154.98624 * 3 2 1 7 7 C 1.38814 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99440 * 185.06212 * 7 2 1 9 9 N 1.36933 * 119.99714 * 5.06241 * 7 2 1 10 10 C 1.47582 * 134.49000 * 173.48110 * 9 7 2 11 11 C 1.53941 * 86.11759 * 155.35970 * 10 9 7 12 12 C 1.53003 * 113.73954 * 269.15700 * 11 10 9 13 13 N 1.46508 * 109.46970 * 183.07520 * 12 11 10 14 14 C 1.34773 * 119.99872 * 179.97438 * 13 12 11 15 15 O 1.21574 * 120.00184 * 359.97438 * 14 13 12 16 16 C 1.47691 * 119.99865 * 179.97438 * 14 13 12 17 17 C 1.39748 * 120.16188 * 89.72367 * 16 14 13 18 18 Cl 1.73601 * 120.08865 * 0.02588 * 17 16 14 19 19 C 1.38099 * 119.82397 * 179.76946 * 17 16 14 20 20 C 1.38324 * 120.17208 * 0.53036 * 19 17 16 21 21 C 1.38334 * 120.34068 * 359.70096 * 20 19 17 22 22 C 1.38104 * 120.16381 * 0.04033 * 21 20 19 23 23 Cl 1.73599 * 120.08512 * 179.97438 * 22 21 20 24 24 C 1.47808 * 134.45725 * 353.35046 * 9 7 2 25 25 H 0.96995 * 119.99775 * 0.02562 * 1 2 3 26 26 H 1.08997 * 113.76639 * 41.05637 * 10 9 7 27 27 H 1.08998 * 113.76570 * 269.66126 * 10 9 7 28 28 H 1.09000 * 113.74374 * 137.95539 * 11 10 9 29 29 H 1.08997 * 109.47105 * 303.06880 * 12 11 10 30 30 H 1.08993 * 109.47283 * 63.07637 * 12 11 10 31 31 H 0.96998 * 119.99406 * 359.97438 * 13 12 11 32 32 H 1.08003 * 119.91613 * 180.27853 * 19 17 16 33 33 H 1.08000 * 119.83725 * 179.72418 * 20 19 17 34 34 H 1.07994 * 119.92319 * 180.02562 * 21 20 19 35 35 H 1.09004 * 113.77216 * 90.38247 * 24 9 7 36 36 H 1.09003 * 113.83955 * 318.91224 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.3923 2.1074 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4122 0.5920 7 6 2.0104 -1.2021 0.0005 8 1 3.0872 -1.2038 0.0831 9 7 1.3297 -2.3857 -0.1036 10 6 1.7288 -3.7985 -0.2549 11 6 0.3712 -4.1416 0.3846 12 6 0.4226 -4.2683 1.9085 13 7 -0.8951 -4.6666 2.4101 14 6 -1.0883 -4.8406 3.7325 15 8 -0.1691 -4.6674 4.5091 16 6 -2.4167 -5.2416 4.2382 17 6 -2.7403 -6.5951 4.3654 18 17 -1.5811 -7.8118 3.9300 19 6 -3.9828 -6.9622 4.8435 20 6 -4.9099 -5.9943 5.1857 21 6 -4.5987 -4.6525 5.0579 22 6 -3.3584 -4.2696 4.5863 23 17 -2.9703 -2.5852 4.4262 24 6 -0.1000 -2.7609 -0.1071 25 1 -0.4849 0.8400 -0.0004 26 1 2.5862 -4.0806 0.3562 27 1 1.8198 -4.1205 -1.2922 28 1 -0.1410 -4.9763 -0.0942 29 1 1.1598 -5.0217 2.1858 30 1 0.7021 -3.3088 2.3436 31 1 -1.6283 -4.8051 1.7903 32 1 -4.2329 -8.0078 4.9468 33 1 -5.8816 -6.2875 5.5548 34 1 -5.3274 -3.9024 5.3274 35 1 -0.5474 -2.7777 -1.1009 36 1 -0.7001 -2.2163 0.6219 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032148653.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:32 Heat of formation + Delta-G solvation = 10.668458 kcal Electronic energy + Delta-G solvation = -22842.693061 eV Core-core repulsion = 19186.505513 eV Total energy + Delta-G solvation = -3656.187548 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.41484 -40.09182 -39.31070 -37.89826 -37.38046 -35.73350 -34.19383 -32.58410 -31.78892 -30.29192 -27.79425 -26.54069 -25.09024 -23.95293 -23.90403 -21.81180 -20.55540 -19.03063 -18.69043 -17.80228 -17.47058 -17.35822 -16.93614 -16.37316 -15.89925 -15.59152 -15.51427 -15.32829 -14.93095 -14.72637 -14.44179 -13.97658 -13.48500 -13.48323 -13.38429 -12.94307 -12.88148 -12.76500 -12.55659 -12.27366 -12.25185 -12.19858 -12.09015 -11.82457 -11.52825 -11.36583 -11.11368 -10.85473 -10.16565 -10.12776 -9.87954 -8.87721 -7.91395 -5.21797 -0.29546 -0.13672 0.69069 1.12042 1.36922 1.42497 1.43748 1.52438 2.01111 2.30608 2.46954 3.28777 3.38973 3.50500 3.70359 3.73786 3.87436 3.93933 4.09605 4.25606 4.30746 4.49404 4.58935 4.75958 4.85590 4.89495 4.98261 5.00808 5.06679 5.11149 5.26410 5.31252 5.48483 5.55740 5.61033 5.95825 6.38111 6.93410 7.04200 7.62227 8.58724 9.26024 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016280 B = 0.003643 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.531006 B = 7683.221826 C = 8843.577156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.969 3.031 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.643 5.643 10 C 0.127 3.873 11 C -0.122 4.122 12 C 0.161 3.839 13 N -0.697 5.697 14 C 0.563 3.437 15 O -0.567 6.567 16 C -0.133 4.133 17 C -0.009 4.009 18 Cl -0.052 7.052 19 C -0.098 4.098 20 C -0.059 4.059 21 C -0.102 4.102 22 C -0.018 4.018 23 Cl -0.064 7.064 24 C 0.167 3.833 25 H 0.246 0.754 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.412 0.588 32 H 0.178 0.822 33 H 0.194 0.806 34 H 0.170 0.830 35 H 0.024 0.976 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.020 -18.646 9.430 25.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.798 3.202 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.370 5.370 10 C 0.002 3.998 11 C -0.141 4.141 12 C 0.038 3.962 13 N -0.347 5.347 14 C 0.349 3.651 15 O -0.446 6.446 16 C -0.138 4.138 17 C -0.037 4.037 18 Cl -0.023 7.023 19 C -0.116 4.116 20 C -0.077 4.077 21 C -0.121 4.121 22 C -0.045 4.045 23 Cl -0.035 7.035 24 C 0.041 3.959 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.131 0.869 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.248 0.752 32 H 0.195 0.805 33 H 0.211 0.789 34 H 0.187 0.813 35 H 0.041 0.959 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.132 -18.150 9.923 25.051 hybrid contribution 0.654 1.596 -0.629 1.836 sum -13.478 -16.554 9.294 23.282 Atomic orbital electron populations 1.70002 1.06278 1.25333 1.58202 1.25556 0.96503 1.00555 1.03172 0.85188 0.77951 0.79747 0.77303 1.21236 1.22363 1.19417 1.19387 0.91180 0.83730 1.41828 0.90227 1.46398 1.03655 1.01893 1.85057 1.22746 0.95495 0.83410 0.98190 1.23166 0.98867 0.98479 0.93571 1.20815 0.83670 0.98852 0.92874 1.45831 1.14105 1.68024 1.06778 1.18253 0.87599 0.76594 0.82676 1.90794 1.44364 1.52317 1.57125 1.19609 0.94326 0.93226 1.06652 1.21007 0.93215 0.87156 1.02291 1.98414 1.59155 1.53460 1.91271 1.21582 0.89756 1.03343 0.96952 1.21781 1.00950 0.89963 0.94984 1.21559 0.93632 0.99093 0.97805 1.21141 0.95713 0.84759 1.02916 1.98465 1.94385 1.14520 1.96138 1.22213 0.86962 0.90011 0.96692 0.94471 0.92749 0.92287 0.86890 0.90948 0.94639 0.75186 0.80456 0.78864 0.81272 0.95868 0.94518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.65 11.51 21.65 0.25 -58.40 16 2 C -0.06 -3.80 5.50 84.86 0.47 -3.34 16 3 Si 0.97 47.47 29.56 68.60 2.03 49.50 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 5 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.23 -13.45 10.70 84.03 0.90 -12.55 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 9 N -0.64 -33.21 3.58 -716.13 -2.57 -35.77 16 10 C 0.13 4.94 8.51 86.48 0.74 5.67 16 11 C -0.12 -4.23 3.99 -10.13 -0.04 -4.27 16 12 C 0.16 5.89 5.42 86.38 0.47 6.35 16 13 N -0.70 -22.16 5.55 -466.11 -2.59 -24.75 16 14 C 0.56 19.19 5.36 86.74 0.47 19.65 16 15 O -0.57 -24.21 17.11 -3.95 -0.07 -24.28 16 16 C -0.13 -3.54 5.64 -20.05 -0.11 -3.65 16 17 C -0.01 -0.18 6.35 22.60 0.14 -0.04 16 18 Cl -0.05 -1.11 28.04 -2.72 -0.08 -1.19 16 19 C -0.10 -1.13 9.82 22.26 0.22 -0.92 16 20 C -0.06 -0.49 10.03 22.31 0.22 -0.27 16 21 C -0.10 -1.46 9.82 22.26 0.22 -1.24 16 22 C -0.02 -0.42 6.35 22.60 0.14 -0.28 16 23 Cl -0.06 -1.94 28.04 -2.72 -0.08 -2.02 16 24 C 0.17 7.77 6.94 86.44 0.60 8.37 16 25 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 26 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 27 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.04 1.66 7.98 -2.39 -0.02 1.64 16 31 H 0.41 10.92 8.46 -92.71 -0.78 10.14 16 32 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 33 H 0.19 -0.12 8.06 -2.91 -0.02 -0.15 16 34 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 35 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.04 1.95 7.32 -2.39 -0.02 1.94 16 Total: -1.00 -78.68 343.88 1.67 -77.00 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 0.34 Total: 6.41 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 4.43 Total: 13.50 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -4.90 Total: -118.92 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.07 Total: -24.28 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Atomic # 17 Polarization: -3.05 SS G_CDS: -0.15 Total: -3.21 kcal Total: -78.68 1.67 -77.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032148653.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.673 kcal (2) G-P(sol) polarization free energy of solvation -78.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds