Wall clock time and date at job start Tue Mar 31 2020 14:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 119.99832 * 2 1 4 4 H 1.48501 * 109.47438 * 269.99925 * 3 2 1 5 5 H 1.48502 * 109.47206 * 30.00012 * 3 2 1 6 6 H 1.48501 * 109.47070 * 150.00343 * 3 2 1 7 7 C 1.38814 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99392 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00134 * 359.97438 * 7 2 1 10 10 C 1.47073 * 136.05912 * 359.95194 * 9 7 2 11 11 C 1.53503 * 87.98214 * 152.91261 * 10 9 7 12 12 C 1.47065 * 136.05875 * 180.02562 * 9 7 2 13 13 H 1.09005 * 113.46577 * 92.24597 * 12 9 7 14 14 C 1.52999 * 113.46924 * 321.87357 * 12 9 7 15 15 N 1.46504 * 109.47431 * 74.49880 * 14 12 9 16 16 C 1.34776 * 120.00156 * 180.02562 * 15 14 12 17 17 O 1.21560 * 119.99946 * 0.02562 * 16 15 14 18 18 C 1.47789 * 119.99863 * 179.97438 * 16 15 14 19 19 C 1.39628 * 120.12583 * 0.02562 * 18 16 15 20 20 C 1.37890 * 119.88959 * 179.97438 * 19 18 16 21 21 C 1.38506 * 120.14821 * 0.02682 * 20 19 18 22 22 Cl 1.73596 * 119.87448 * 179.97438 * 21 20 19 23 23 C 1.38601 * 120.24877 * 359.67040 * 21 20 19 24 24 Cl 1.73608 * 119.94341 * 180.32631 * 23 21 20 25 25 C 1.38027 * 120.10929 * 0.60999 * 23 21 20 26 26 H 0.96994 * 119.99842 * 0.02562 * 1 2 3 27 27 H 1.08999 * 113.46980 * 267.69624 * 10 9 7 28 28 H 1.09001 * 113.46196 * 38.13504 * 10 9 7 29 29 H 1.08999 * 114.20862 * 272.48123 * 11 10 9 30 30 H 1.08998 * 114.20009 * 139.65998 * 11 10 9 31 31 H 1.09004 * 109.46761 * 314.49987 * 14 12 9 32 32 H 1.08995 * 109.47516 * 194.50466 * 14 12 9 33 33 H 0.96996 * 119.99799 * 0.02562 * 15 14 12 34 34 H 1.08001 * 120.05582 * 359.95502 * 19 18 16 35 35 H 1.08003 * 119.92512 * 180.02562 * 20 19 18 36 36 H 1.08002 * 120.07802 * 179.69910 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.0877 -2.7949 0.0008 11 6 0.3412 -4.0920 -0.6991 12 6 1.6799 -3.8154 -0.0005 13 1 1.7464 -4.2461 0.9986 14 6 2.8982 -4.1408 -0.8670 15 7 4.1153 -3.6902 -0.1874 16 6 5.3180 -3.8727 -0.7675 17 8 5.3929 -4.4108 -1.8550 18 6 6.5457 -3.4177 -0.0821 19 6 6.4627 -2.7988 1.1668 20 6 7.6113 -2.3766 1.8022 21 6 8.8464 -2.5646 1.2040 22 17 10.2879 -2.0297 2.0100 23 6 8.9362 -3.1838 -0.0327 24 17 10.4890 -3.4230 -0.7713 25 6 7.7927 -3.6054 -0.6807 26 1 -0.4849 0.8400 -0.0004 27 1 -0.4927 -2.9542 1.0001 28 1 -0.7230 -2.1587 -0.6156 29 1 0.3810 -4.0213 -1.7860 30 1 -0.1734 -4.9838 -0.3416 31 1 2.8080 -3.6314 -1.8265 32 1 2.9507 -5.2171 -1.0307 33 1 4.0555 -3.2605 0.6802 34 1 5.5004 -2.6508 1.6342 35 1 7.5478 -1.8983 2.7684 36 1 7.8629 -4.0834 -1.6466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038948045.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:33 Heat of formation + Delta-G solvation = 33.750029 kcal Electronic energy + Delta-G solvation = -22636.905798 eV Core-core repulsion = 18981.719142 eV Total energy + Delta-G solvation = -3655.186656 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35260 -38.87124 -38.05049 -36.84217 -36.69482 -34.32287 -32.31362 -31.40313 -31.20226 -28.14909 -27.66753 -24.15503 -23.54392 -23.20104 -21.93959 -20.49115 -19.37266 -18.40729 -16.99299 -16.54585 -16.42047 -15.59685 -15.42696 -15.20370 -14.80239 -14.30179 -14.21875 -14.13482 -13.80606 -13.33404 -13.02660 -12.76957 -12.19270 -12.12548 -12.04607 -11.64456 -11.53497 -11.34082 -11.22062 -11.16948 -11.05161 -10.84518 -10.63462 -10.13253 -9.90924 -9.85918 -9.34389 -9.32240 -9.08839 -8.88773 -8.69319 -6.97923 -5.84437 -3.17600 0.29507 0.75092 1.49355 1.84805 2.59558 3.28156 3.32952 3.37558 3.40141 3.53718 4.27319 4.35594 4.58623 4.65152 4.80471 4.88377 5.11783 5.31701 5.38240 5.47863 5.52030 5.64289 5.69621 5.82895 5.84693 6.00939 6.14279 6.24908 6.33012 6.52308 6.60735 6.73748 7.14857 7.31751 7.50552 7.68489 7.89695 8.31835 8.94579 9.62539 10.54876 11.32557 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.003385 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.452286 B = 8269.222354 C = 9513.664298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.218 4.218 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.151 3.849 11 C -0.160 4.160 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.121 3.879 15 N -0.703 5.703 16 C 0.554 3.446 17 O -0.540 6.540 18 C -0.109 4.109 19 C -0.067 4.067 20 C -0.104 4.104 21 C -0.013 4.013 22 Cl -0.047 7.047 23 C -0.041 4.041 24 Cl -0.046 7.046 25 C -0.043 4.043 26 H 0.254 0.746 27 H 0.025 0.975 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.403 0.597 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.190 -8.161 3.997 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.004 4.004 15 N -0.353 5.353 16 C 0.339 3.661 17 O -0.419 6.419 18 C -0.113 4.113 19 C -0.086 4.086 20 C -0.122 4.122 21 C -0.041 4.041 22 Cl -0.017 7.017 23 C -0.068 4.068 24 Cl -0.017 7.017 25 C -0.062 4.062 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.239 0.761 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 15.503 -8.131 3.233 17.802 hybrid contribution 0.684 1.316 0.612 1.605 sum 16.188 -6.815 3.845 17.980 Atomic orbital electron populations 1.69822 1.04988 1.25381 1.56071 1.24769 0.95621 0.97423 1.02340 0.86208 0.78575 0.83721 0.77763 1.21490 1.21595 1.20672 1.18806 0.89922 0.81347 1.44414 0.90284 1.45674 1.02648 0.98496 1.85932 1.22034 0.88678 0.90196 0.96525 1.23665 0.96750 0.99104 1.00434 1.22437 0.91994 0.87870 0.95864 0.93376 1.21905 0.82661 0.98456 0.97349 1.45900 1.05834 1.60183 1.23394 1.17987 0.83239 0.79558 0.85280 1.90770 1.86946 1.43755 1.20458 1.20131 0.93965 1.01609 0.95603 1.21521 0.99236 0.94407 0.93459 1.21022 0.89472 1.00547 1.01187 1.21006 0.89498 1.00517 0.93073 1.98398 1.36409 1.88325 1.78601 1.20625 0.88459 1.03866 0.93895 1.98395 1.25899 1.95463 1.81901 1.21129 0.88815 0.96147 1.00140 0.93600 0.95686 0.90949 0.90137 0.92272 0.90722 0.91892 0.76106 0.83538 0.83191 0.82627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.11 11.51 55.49 0.64 -25.47 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 3 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.22 -5.56 10.55 -15.06 -0.16 -5.72 16 8 H 0.08 1.92 7.50 -52.49 -0.39 1.52 16 9 N -0.60 -13.90 3.65 -176.98 -0.65 -14.55 16 10 C 0.15 3.31 7.39 -8.50 -0.06 3.25 16 11 C -0.16 -2.76 8.03 -26.21 -0.21 -2.97 16 12 C 0.13 2.27 4.10 -72.39 -0.30 1.97 16 13 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 14 C 0.12 2.03 5.52 -4.04 -0.02 2.01 16 15 N -0.70 -11.04 5.28 -61.27 -0.32 -11.36 16 16 C 0.55 8.84 7.77 -12.36 -0.10 8.75 16 17 O -0.54 -10.21 16.35 5.31 0.09 -10.12 16 18 C -0.11 -1.44 5.87 -104.97 -0.62 -2.06 16 19 C -0.07 -0.75 9.54 -39.19 -0.37 -1.12 16 20 C -0.10 -1.04 9.81 -39.61 -0.39 -1.43 16 21 C -0.01 -0.14 6.33 -39.35 -0.25 -0.39 16 22 Cl -0.05 -0.46 27.94 -51.86 -1.45 -1.91 16 23 C -0.04 -0.47 6.32 -39.52 -0.25 -0.72 16 24 Cl -0.05 -0.49 27.94 -51.86 -1.45 -1.94 16 25 C -0.04 -0.53 9.37 -39.16 -0.37 -0.90 16 26 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.79 7.12 -51.93 -0.37 1.42 16 29 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.40 5.85 6.40 -40.82 -0.26 5.59 16 34 H 0.15 1.44 6.40 -52.49 -0.34 1.11 16 35 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 36 H 0.16 1.93 7.65 -52.49 -0.40 1.53 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -30.17 339.93 -10.09 -40.25 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -3.86 Total: 3.22 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -3.19 Total: 0.45 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.33 Total: -51.38 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -2.90 Total: -3.85 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.17 -10.09 -40.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038948045.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.002 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds