Wall clock time and date at job start Tue Mar 31 2020 14:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 119.99832 * 2 1 4 4 H 1.48501 * 109.47438 * 269.99925 * 3 2 1 5 5 H 1.48502 * 109.47206 * 30.00012 * 3 2 1 6 6 H 1.48501 * 109.47070 * 150.00343 * 3 2 1 7 7 C 1.38814 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99392 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00134 * 359.97438 * 7 2 1 10 10 C 1.47073 * 136.05912 * 359.95194 * 9 7 2 11 11 C 1.53503 * 87.98214 * 152.91261 * 10 9 7 12 12 C 1.47065 * 136.05875 * 180.02562 * 9 7 2 13 13 H 1.09005 * 113.46577 * 92.24597 * 12 9 7 14 14 C 1.52999 * 113.46924 * 321.87357 * 12 9 7 15 15 N 1.46504 * 109.47431 * 74.49880 * 14 12 9 16 16 C 1.34776 * 120.00156 * 180.02562 * 15 14 12 17 17 O 1.21560 * 119.99946 * 0.02562 * 16 15 14 18 18 C 1.47789 * 119.99863 * 179.97438 * 16 15 14 19 19 C 1.39628 * 120.12583 * 0.02562 * 18 16 15 20 20 C 1.37890 * 119.88959 * 179.97438 * 19 18 16 21 21 C 1.38506 * 120.14821 * 0.02682 * 20 19 18 22 22 Cl 1.73596 * 119.87448 * 179.97438 * 21 20 19 23 23 C 1.38601 * 120.24877 * 359.67040 * 21 20 19 24 24 Cl 1.73608 * 119.94341 * 180.32631 * 23 21 20 25 25 C 1.38027 * 120.10929 * 0.60999 * 23 21 20 26 26 H 0.96994 * 119.99842 * 0.02562 * 1 2 3 27 27 H 1.08999 * 113.46980 * 267.69624 * 10 9 7 28 28 H 1.09001 * 113.46196 * 38.13504 * 10 9 7 29 29 H 1.08999 * 114.20862 * 272.48123 * 11 10 9 30 30 H 1.08998 * 114.20009 * 139.65998 * 11 10 9 31 31 H 1.09004 * 109.46761 * 314.49987 * 14 12 9 32 32 H 1.08995 * 109.47516 * 194.50466 * 14 12 9 33 33 H 0.96996 * 119.99799 * 0.02562 * 15 14 12 34 34 H 1.08001 * 120.05582 * 359.95502 * 19 18 16 35 35 H 1.08003 * 119.92512 * 180.02562 * 20 19 18 36 36 H 1.08002 * 120.07802 * 179.69910 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.0877 -2.7949 0.0008 11 6 0.3412 -4.0920 -0.6991 12 6 1.6799 -3.8154 -0.0005 13 1 1.7464 -4.2461 0.9986 14 6 2.8982 -4.1408 -0.8670 15 7 4.1153 -3.6902 -0.1874 16 6 5.3180 -3.8727 -0.7675 17 8 5.3929 -4.4108 -1.8550 18 6 6.5457 -3.4177 -0.0821 19 6 6.4627 -2.7988 1.1668 20 6 7.6113 -2.3766 1.8022 21 6 8.8464 -2.5646 1.2040 22 17 10.2879 -2.0297 2.0100 23 6 8.9362 -3.1838 -0.0327 24 17 10.4890 -3.4230 -0.7713 25 6 7.7927 -3.6054 -0.6807 26 1 -0.4849 0.8400 -0.0004 27 1 -0.4927 -2.9542 1.0001 28 1 -0.7230 -2.1587 -0.6156 29 1 0.3810 -4.0213 -1.7860 30 1 -0.1734 -4.9838 -0.3416 31 1 2.8080 -3.6314 -1.8265 32 1 2.9507 -5.2171 -1.0307 33 1 4.0555 -3.2605 0.6802 34 1 5.5004 -2.6508 1.6342 35 1 7.5478 -1.8983 2.7684 36 1 7.8629 -4.0834 -1.6466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038948045.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:32 Heat of formation + Delta-G solvation = 16.280796 kcal Electronic energy + Delta-G solvation = -22637.663321 eV Core-core repulsion = 18981.719142 eV Total energy + Delta-G solvation = -3655.944179 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.45609 -40.13808 -39.42512 -37.68092 -37.57436 -35.67382 -34.22847 -32.36226 -32.13621 -29.93519 -29.08886 -25.36881 -25.25661 -24.11693 -23.32690 -21.70719 -20.96517 -19.56779 -18.47352 -17.74641 -17.50289 -17.09019 -16.59912 -16.32595 -16.26436 -15.76834 -15.42258 -15.17116 -15.06110 -14.77167 -14.52754 -13.69667 -13.62358 -13.33430 -13.01810 -12.99699 -12.93810 -12.70734 -12.60091 -12.47005 -12.27665 -12.19979 -12.02530 -11.83369 -11.61312 -11.33701 -10.90666 -10.80514 -10.25177 -10.12363 -9.86939 -8.86511 -7.84885 -5.16344 -0.64665 -0.12193 0.64400 0.98641 1.45793 1.48222 1.53923 1.54623 2.08687 2.48407 2.49149 3.36631 3.41764 3.43398 3.57485 3.80171 3.90601 3.95016 3.98144 4.17041 4.37445 4.54499 4.62208 4.67101 4.73086 4.80817 4.90535 4.95311 5.08946 5.12379 5.26029 5.35499 5.40577 5.61921 5.77201 5.99664 6.45498 6.95890 7.08897 7.67368 8.66725 9.32799 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.003385 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.452286 B = 8269.222354 C = 9513.664298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.962 3.038 4 H -0.297 1.297 5 H -0.299 1.299 6 H -0.260 1.260 7 C -0.205 4.205 8 H 0.091 0.909 9 N -0.629 5.629 10 C 0.142 3.858 11 C -0.136 4.136 12 C 0.134 3.866 13 H 0.074 0.926 14 C 0.129 3.871 15 N -0.701 5.701 16 C 0.554 3.446 17 O -0.576 6.576 18 C -0.125 4.125 19 C -0.061 4.061 20 C -0.096 4.096 21 C -0.013 4.013 22 Cl -0.036 7.036 23 C -0.046 4.046 24 Cl -0.041 7.041 25 C -0.048 4.048 26 H 0.244 0.756 27 H 0.024 0.976 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.410 0.590 34 H 0.161 0.839 35 H 0.178 0.822 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.819 -9.001 5.382 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.791 3.209 4 H -0.225 1.225 5 H -0.226 1.226 6 H -0.185 1.185 7 C -0.333 4.333 8 H 0.108 0.892 9 N -0.355 5.355 10 C 0.016 3.984 11 C -0.174 4.174 12 C 0.028 3.972 13 H 0.091 0.909 14 C 0.004 3.996 15 N -0.351 5.351 16 C 0.342 3.658 17 O -0.457 6.457 18 C -0.128 4.128 19 C -0.080 4.080 20 C -0.114 4.114 21 C -0.041 4.041 22 Cl -0.007 7.007 23 C -0.074 4.074 24 Cl -0.012 7.012 25 C -0.067 4.067 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.247 0.753 34 H 0.178 0.822 35 H 0.196 0.804 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 17.168 -9.004 4.643 19.934 hybrid contribution 0.246 1.500 0.197 1.533 sum 17.414 -7.504 4.840 19.570 Atomic orbital electron populations 1.70005 1.06348 1.25116 1.58866 1.25489 0.96320 1.00409 1.03968 0.85316 0.78228 0.80260 0.77064 1.22496 1.22605 1.18451 1.19206 0.90633 0.82334 1.41137 0.89181 1.45990 1.03596 1.00028 1.85884 1.22047 0.87862 0.92093 0.96372 1.23492 0.95868 0.98105 0.99966 1.22579 0.92790 0.84732 0.97111 0.90886 1.21698 0.82822 0.99333 0.95745 1.45844 1.05519 1.60163 1.23558 1.18354 0.83934 0.78708 0.84826 1.90748 1.87485 1.45438 1.22075 1.19933 0.92799 1.03429 0.96673 1.21667 1.00339 0.93506 0.92510 1.21311 0.88551 0.99628 1.01925 1.21172 0.90290 0.99855 0.92798 1.98407 1.35927 1.88100 1.78265 1.20645 0.88402 1.04061 0.94266 1.98396 1.25410 1.95459 1.81928 1.21084 0.89097 0.96453 1.00103 0.94691 0.95848 0.94781 0.90348 0.88216 0.93659 0.89786 0.75304 0.82163 0.80449 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.83 11.51 21.65 0.25 -55.58 16 2 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 3 Si 0.96 44.00 29.55 68.60 2.03 46.03 16 4 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.20 -10.34 10.55 84.03 0.89 -9.45 16 8 H 0.09 4.23 7.50 -2.91 -0.02 4.20 16 9 N -0.63 -28.57 3.65 -713.85 -2.61 -31.18 16 10 C 0.14 6.18 7.39 83.18 0.62 6.80 16 11 C -0.14 -4.36 8.03 30.93 0.25 -4.11 16 12 C 0.13 4.50 4.10 41.79 0.17 4.67 16 13 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 14 C 0.13 4.11 5.52 86.38 0.48 4.58 16 15 N -0.70 -20.74 5.28 -466.02 -2.46 -23.20 16 16 C 0.55 17.12 7.77 86.77 0.67 17.80 16 17 O -0.58 -21.62 16.35 -3.90 -0.06 -21.69 16 18 C -0.12 -3.11 5.87 -20.09 -0.12 -3.23 16 19 C -0.06 -1.20 9.54 22.52 0.21 -0.98 16 20 C -0.10 -1.61 9.81 22.25 0.22 -1.40 16 21 C -0.01 -0.25 6.33 22.42 0.14 -0.11 16 22 Cl -0.04 -0.63 27.94 -2.72 -0.08 -0.71 16 23 C -0.05 -0.99 6.32 22.31 0.14 -0.85 16 24 Cl -0.04 -0.83 27.94 -2.72 -0.08 -0.90 16 25 C -0.05 -1.14 9.37 22.55 0.21 -0.93 16 26 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 27 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.03 1.73 7.12 -2.39 -0.02 1.71 16 29 H 0.08 2.57 8.12 -2.39 -0.02 2.55 16 30 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.41 10.90 6.40 -92.71 -0.59 10.31 16 34 H 0.16 2.65 6.40 -2.91 -0.02 2.63 16 35 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 36 H 0.15 3.70 7.65 -2.91 -0.02 3.68 16 Total: -1.00 -66.10 339.93 1.88 -64.23 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.54 Total: 13.49 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 4.35 Total: 9.51 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -4.82 Total: -109.96 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.06 Total: -21.69 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.15 Total: -1.61 kcal Total: -66.10 1.88 -64.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038948045.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.506 kcal (2) G-P(sol) polarization free energy of solvation -66.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds