Wall clock time and date at job start Tue Mar 31 2020 14:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99638 * 2 1 4 4 H 1.48499 * 109.47378 * 240.00374 * 3 2 1 5 5 H 1.48504 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46592 * 120.00127 * 3 2 1 7 7 C 1.38814 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99656 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00029 * 359.97438 * 7 2 1 10 10 C 1.47580 * 134.49260 * 0.02562 * 9 7 2 11 11 C 1.53944 * 86.11758 * 204.63831 * 10 9 7 12 12 C 1.47580 * 134.49410 * 179.97438 * 9 7 2 13 13 H 1.09002 * 113.86983 * 269.67812 * 12 9 7 14 14 C 1.52997 * 113.76703 * 41.05776 * 12 9 7 15 15 N 1.46500 * 109.47378 * 281.49639 * 14 12 9 16 16 C 1.34777 * 119.99912 * 179.97438 * 15 14 12 17 17 O 1.21558 * 120.00173 * 359.97438 * 16 15 14 18 18 C 1.47798 * 119.99784 * 179.97438 * 16 15 14 19 19 C 1.39627 * 120.12340 * 0.25524 * 18 16 15 20 20 C 1.37885 * 119.88960 * 180.23283 * 19 18 16 21 21 C 1.38513 * 120.14520 * 359.51029 * 20 19 18 22 22 Cl 1.73601 * 119.87063 * 180.23642 * 21 20 19 23 23 C 1.38596 * 120.25352 * 0.25885 * 21 20 19 24 24 Cl 1.73597 * 119.94484 * 179.97438 * 23 21 20 25 25 C 1.38035 * 120.10566 * 359.97438 * 23 21 20 26 26 H 0.96998 * 120.00341 * 359.97438 * 1 2 3 27 27 H 1.08998 * 113.77158 * 90.33452 * 10 9 7 28 28 H 1.09007 * 113.86930 * 318.95227 * 10 9 7 29 29 H 1.09002 * 113.74297 * 222.04764 * 11 10 9 30 30 H 1.08999 * 113.83705 * 90.74504 * 11 10 9 31 31 H 1.08994 * 109.47349 * 161.49377 * 14 12 9 32 32 H 1.09001 * 109.47213 * 41.49508 * 14 12 9 33 33 H 0.96997 * 120.00196 * 0.02562 * 15 14 12 34 34 H 1.08002 * 120.05839 * 0.02562 * 19 18 16 35 35 H 1.08002 * 119.93015 * 179.79422 * 20 19 18 36 36 H 1.07994 * 120.07383 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1031 -2.7574 -0.0005 11 6 0.3472 -4.0830 0.6398 12 6 1.7203 -3.8101 -0.0015 13 1 1.8320 -4.2362 -0.9985 14 6 2.9032 -4.1224 0.9172 15 7 4.1500 -3.7188 0.2622 16 6 5.3294 -3.8991 0.8891 17 8 5.3587 -4.3961 1.9980 18 6 6.5873 -3.4924 0.2281 19 6 6.5563 -2.9164 -1.0435 20 6 7.7330 -2.5433 -1.6577 21 6 8.9442 -2.7293 -1.0118 22 17 10.4209 -2.2513 -1.7892 23 6 8.9816 -3.2961 0.2524 24 17 10.5040 -3.5262 1.0541 25 6 7.8102 -3.6779 0.8749 26 1 -0.4850 0.8400 0.0004 27 1 -0.5271 -2.8730 -0.9980 28 1 -0.7184 -2.1400 0.6541 29 1 -0.1590 -4.9598 0.2358 30 1 0.3597 -4.0639 1.7295 31 1 2.9308 -5.1923 1.1231 32 1 2.7908 -3.5751 1.8531 33 1 4.1266 -3.3212 -0.6222 34 1 5.6124 -2.7665 -1.5465 35 1 7.7100 -2.1007 -2.6426 36 1 7.8399 -4.1191 1.8602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038948049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:36 Heat of formation + Delta-G solvation = 30.392886 kcal Electronic energy + Delta-G solvation = -22592.620005 eV Core-core repulsion = 18937.287773 eV Total energy + Delta-G solvation = -3655.332233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.35834 -38.82225 -37.90658 -36.85077 -36.70293 -34.33519 -32.27089 -31.41272 -31.21200 -28.09653 -27.68633 -24.19483 -23.42603 -23.21939 -22.06532 -20.50851 -19.27647 -18.39617 -16.99750 -16.53226 -16.42932 -15.60966 -15.42397 -15.21276 -14.80406 -14.31108 -14.23023 -14.14630 -13.79598 -13.35293 -13.04133 -12.78117 -12.20033 -12.13791 -12.03051 -11.59455 -11.47038 -11.35025 -11.22760 -11.16088 -11.07007 -10.78323 -10.62734 -10.16334 -9.86035 -9.80966 -9.47188 -9.34848 -9.10272 -8.85477 -8.71513 -6.96043 -5.82281 -3.15330 0.28387 0.73919 1.48490 1.83944 2.58482 3.26763 3.33738 3.39311 3.40363 3.52597 4.26182 4.36743 4.57301 4.63628 4.79325 4.87030 5.05764 5.32496 5.37143 5.49969 5.55245 5.63405 5.68207 5.83197 5.84101 5.99895 6.13159 6.24658 6.34184 6.54985 6.60272 6.74371 7.18378 7.34534 7.53252 7.66970 7.92246 8.30672 8.97715 9.65112 10.52953 11.34195 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.003319 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.364159 B = 8435.436590 C = 9624.628285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.906 3.094 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.125 3.875 13 H 0.050 0.950 14 C 0.122 3.878 15 N -0.704 5.704 16 C 0.554 3.446 17 O -0.540 6.540 18 C -0.109 4.109 19 C -0.068 4.068 20 C -0.104 4.104 21 C -0.013 4.013 22 Cl -0.046 7.046 23 C -0.041 4.041 24 Cl -0.045 7.045 25 C -0.043 4.043 26 H 0.254 0.746 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.402 0.598 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.453 -8.580 -3.640 18.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.736 3.264 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.194 4.194 12 C 0.017 3.983 13 H 0.067 0.933 14 C -0.002 4.002 15 N -0.354 5.354 16 C 0.340 3.660 17 O -0.418 6.418 18 C -0.113 4.113 19 C -0.087 4.087 20 C -0.122 4.122 21 C -0.041 4.041 22 Cl -0.017 7.017 23 C -0.068 4.068 24 Cl -0.016 7.016 25 C -0.062 4.062 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.238 0.762 34 H 0.164 0.836 35 H 0.168 0.832 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 15.712 -8.543 -2.840 18.108 hybrid contribution 0.745 1.318 -0.630 1.640 sum 16.457 -7.225 -3.470 18.305 Atomic orbital electron populations 1.69799 1.04976 1.25464 1.56236 1.24748 0.95592 0.97388 1.02376 0.86310 0.78624 0.83552 0.77936 1.21190 1.21494 1.21096 1.18855 0.90036 0.81925 1.44248 0.90512 1.46064 1.02315 0.98481 1.86002 1.22195 0.87904 0.89604 0.96923 1.23778 0.95991 0.99025 1.00619 1.22522 0.92336 0.87780 0.95651 0.93255 1.21857 0.81846 0.98978 0.97515 1.45897 1.05976 1.62188 1.21310 1.17985 0.83370 0.79216 0.85477 1.90772 1.87233 1.44627 1.19209 1.20132 0.93990 1.01873 0.95303 1.21513 0.98922 0.94614 0.93616 1.21021 0.89555 1.00553 1.01108 1.21009 0.89204 1.01081 0.92808 1.98399 1.33294 1.89983 1.80045 1.20627 0.88750 1.04330 0.93125 1.98395 1.28701 1.95520 1.79011 1.21132 0.88681 0.95954 1.00457 0.93565 0.95545 0.90804 0.92756 0.90439 0.91790 0.90590 0.76186 0.83551 0.83191 0.82620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.21 11.39 55.49 0.63 -25.57 16 2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 3 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -5.74 10.51 -15.06 -0.16 -5.89 16 8 H 0.08 1.87 7.80 -52.49 -0.41 1.46 16 9 N -0.60 -13.97 3.57 -170.73 -0.61 -14.58 16 10 C 0.16 3.49 7.51 -2.98 -0.02 3.47 16 11 C -0.16 -2.68 7.86 -25.79 -0.20 -2.88 16 12 C 0.12 2.24 4.33 -66.85 -0.29 1.95 16 13 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 14 C 0.12 2.06 5.54 -4.04 -0.02 2.04 16 15 N -0.70 -10.92 5.48 -61.27 -0.34 -11.25 16 16 C 0.55 8.77 7.77 -12.35 -0.10 8.68 16 17 O -0.54 -10.16 16.35 5.31 0.09 -10.07 16 18 C -0.11 -1.42 5.87 -104.97 -0.62 -2.04 16 19 C -0.07 -0.73 9.54 -39.19 -0.37 -1.11 16 20 C -0.10 -1.01 9.81 -39.61 -0.39 -1.40 16 21 C -0.01 -0.14 6.33 -39.35 -0.25 -0.39 16 22 Cl -0.05 -0.46 27.94 -51.86 -1.45 -1.91 16 23 C -0.04 -0.46 6.32 -39.52 -0.25 -0.71 16 24 Cl -0.05 -0.48 27.94 -51.86 -1.45 -1.93 16 25 C -0.04 -0.53 9.37 -39.15 -0.37 -0.89 16 26 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.82 7.16 -51.93 -0.37 1.45 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.40 5.70 6.50 -40.82 -0.27 5.43 16 34 H 0.15 1.39 6.40 -52.49 -0.34 1.05 16 35 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.16 1.92 7.65 -52.49 -0.40 1.52 16 LS Contribution 340.49 15.07 5.13 5.13 Total: -1.00 -30.34 340.49 -10.03 -40.37 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -3.88 Total: 2.81 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -3.13 Total: 0.61 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.31 Total: -51.40 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -2.90 Total: -3.84 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.34 -10.03 -40.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038948049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.761 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds