Wall clock time and date at job start Tue Mar 31 2020 14:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99638 * 2 1 4 4 H 1.48499 * 109.47378 * 240.00374 * 3 2 1 5 5 H 1.48504 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46592 * 120.00127 * 3 2 1 7 7 C 1.38814 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99656 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00029 * 359.97438 * 7 2 1 10 10 C 1.47580 * 134.49260 * 0.02562 * 9 7 2 11 11 C 1.53944 * 86.11758 * 204.63831 * 10 9 7 12 12 C 1.47580 * 134.49410 * 179.97438 * 9 7 2 13 13 H 1.09002 * 113.86983 * 269.67812 * 12 9 7 14 14 C 1.52997 * 113.76703 * 41.05776 * 12 9 7 15 15 N 1.46500 * 109.47378 * 281.49639 * 14 12 9 16 16 C 1.34777 * 119.99912 * 179.97438 * 15 14 12 17 17 O 1.21558 * 120.00173 * 359.97438 * 16 15 14 18 18 C 1.47798 * 119.99784 * 179.97438 * 16 15 14 19 19 C 1.39627 * 120.12340 * 0.25524 * 18 16 15 20 20 C 1.37885 * 119.88960 * 180.23283 * 19 18 16 21 21 C 1.38513 * 120.14520 * 359.51029 * 20 19 18 22 22 Cl 1.73601 * 119.87063 * 180.23642 * 21 20 19 23 23 C 1.38596 * 120.25352 * 0.25885 * 21 20 19 24 24 Cl 1.73597 * 119.94484 * 179.97438 * 23 21 20 25 25 C 1.38035 * 120.10566 * 359.97438 * 23 21 20 26 26 H 0.96998 * 120.00341 * 359.97438 * 1 2 3 27 27 H 1.08998 * 113.77158 * 90.33452 * 10 9 7 28 28 H 1.09007 * 113.86930 * 318.95227 * 10 9 7 29 29 H 1.09002 * 113.74297 * 222.04764 * 11 10 9 30 30 H 1.08999 * 113.83705 * 90.74504 * 11 10 9 31 31 H 1.08994 * 109.47349 * 161.49377 * 14 12 9 32 32 H 1.09001 * 109.47213 * 41.49508 * 14 12 9 33 33 H 0.96997 * 120.00196 * 0.02562 * 15 14 12 34 34 H 1.08002 * 120.05839 * 0.02562 * 19 18 16 35 35 H 1.08002 * 119.93015 * 179.79422 * 20 19 18 36 36 H 1.07994 * 120.07383 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1031 -2.7574 -0.0005 11 6 0.3472 -4.0830 0.6398 12 6 1.7203 -3.8101 -0.0015 13 1 1.8320 -4.2362 -0.9985 14 6 2.9032 -4.1224 0.9172 15 7 4.1500 -3.7188 0.2622 16 6 5.3294 -3.8991 0.8891 17 8 5.3587 -4.3961 1.9980 18 6 6.5873 -3.4924 0.2281 19 6 6.5563 -2.9164 -1.0435 20 6 7.7330 -2.5433 -1.6577 21 6 8.9442 -2.7293 -1.0118 22 17 10.4209 -2.2513 -1.7892 23 6 8.9816 -3.2961 0.2524 24 17 10.5040 -3.5262 1.0541 25 6 7.8102 -3.6779 0.8749 26 1 -0.4850 0.8400 0.0004 27 1 -0.5271 -2.8730 -0.9980 28 1 -0.7184 -2.1400 0.6541 29 1 -0.1590 -4.9598 0.2358 30 1 0.3597 -4.0639 1.7295 31 1 2.9308 -5.1923 1.1231 32 1 2.7908 -3.5751 1.8531 33 1 4.1266 -3.3212 -0.6222 34 1 5.6124 -2.7665 -1.5465 35 1 7.7100 -2.1007 -2.6426 36 1 7.8399 -4.1191 1.8602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038948049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:36 Heat of formation + Delta-G solvation = 12.760864 kcal Electronic energy + Delta-G solvation = -22593.384587 eV Core-core repulsion = 18937.287773 eV Total energy + Delta-G solvation = -3656.096814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.44605 -40.02583 -39.34377 -37.68024 -37.57342 -35.68549 -34.18806 -32.36164 -32.13639 -29.87046 -29.13051 -25.30354 -25.25727 -24.13057 -23.42912 -21.71458 -20.85042 -19.56490 -18.46392 -17.73786 -17.50881 -17.07923 -16.60684 -16.32553 -16.27207 -15.75437 -15.44649 -15.17561 -15.06025 -14.78654 -14.54137 -13.69516 -13.60203 -13.26906 -13.01688 -12.99720 -12.89394 -12.67516 -12.59514 -12.47584 -12.30361 -12.19987 -12.02470 -11.83859 -11.51636 -11.41668 -10.99050 -10.78867 -10.25501 -10.12886 -9.87218 -8.85221 -7.83681 -5.15028 -0.64552 -0.12055 0.64558 0.98852 1.45804 1.48586 1.53332 1.53959 2.07917 2.48463 2.49801 3.33126 3.40882 3.43367 3.55690 3.80381 3.90751 3.96187 4.02525 4.16104 4.38487 4.54599 4.61840 4.67078 4.75012 4.80994 4.90203 4.95395 5.09762 5.12794 5.26182 5.36807 5.40224 5.64676 5.78259 6.01283 6.45317 6.98201 7.08908 7.69272 8.63663 9.33078 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014135 B = 0.003319 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.364159 B = 8435.436590 C = 9624.628285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.301 1.301 6 H -0.287 1.287 7 C -0.212 4.212 8 H 0.088 0.912 9 N -0.629 5.629 10 C 0.149 3.851 11 C -0.132 4.132 12 C 0.133 3.867 13 H 0.076 0.924 14 C 0.131 3.869 15 N -0.701 5.701 16 C 0.554 3.446 17 O -0.576 6.576 18 C -0.125 4.125 19 C -0.061 4.061 20 C -0.095 4.095 21 C -0.013 4.013 22 Cl -0.037 7.037 23 C -0.046 4.046 24 Cl -0.041 7.041 25 C -0.048 4.048 26 H 0.244 0.756 27 H 0.023 0.977 28 H 0.036 0.964 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.410 0.590 34 H 0.162 0.838 35 H 0.179 0.821 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.069 -9.428 -5.087 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.227 1.227 6 H -0.213 1.213 7 C -0.340 4.340 8 H 0.105 0.895 9 N -0.355 5.355 10 C 0.024 3.976 11 C -0.170 4.170 12 C 0.027 3.973 13 H 0.093 0.907 14 C 0.006 3.994 15 N -0.351 5.351 16 C 0.342 3.658 17 O -0.458 6.458 18 C -0.128 4.128 19 C -0.080 4.080 20 C -0.114 4.114 21 C -0.041 4.041 22 Cl -0.007 7.007 23 C -0.074 4.074 24 Cl -0.012 7.012 25 C -0.068 4.068 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.247 0.753 34 H 0.180 0.820 35 H 0.196 0.804 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 17.362 -9.422 -4.314 20.219 hybrid contribution 0.319 1.506 -0.195 1.551 sum 17.681 -7.917 -4.508 19.890 Atomic orbital electron populations 1.69985 1.06284 1.25159 1.58963 1.25462 0.96298 1.00358 1.04002 0.85407 0.77305 0.80054 0.78159 1.19621 1.22729 1.21325 1.19259 0.90732 0.82967 1.41081 0.89474 1.46407 1.03215 0.99963 1.85955 1.22161 0.87187 0.91797 0.96464 1.23577 0.95191 0.97826 1.00439 1.22693 0.93078 0.84575 0.96932 0.90665 1.21638 0.82124 0.99746 0.95883 1.45831 1.05571 1.62151 1.21545 1.18360 0.84144 0.78306 0.85001 1.90750 1.87800 1.46348 1.20855 1.19930 0.92689 1.03793 0.96417 1.21673 1.00080 0.93611 0.92617 1.21317 0.88598 0.99524 1.01946 1.21179 0.90017 1.00393 0.92539 1.98408 1.32810 1.89779 1.79725 1.20647 0.88637 1.04570 0.93548 1.98395 1.28260 1.95522 1.79052 1.21084 0.89021 0.96302 1.00373 0.94681 0.95914 0.94508 0.88779 0.90462 0.89676 0.93693 0.75270 0.82027 0.80396 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.92 11.39 21.65 0.25 -55.67 16 2 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 3 Si 0.96 44.26 29.55 68.60 2.03 46.29 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.21 -10.77 10.51 84.03 0.88 -9.88 16 8 H 0.09 4.13 7.80 -2.91 -0.02 4.10 16 9 N -0.63 -28.66 3.57 -694.08 -2.48 -31.14 16 10 C 0.15 6.55 7.51 86.48 0.65 7.20 16 11 C -0.13 -4.26 7.86 31.26 0.25 -4.01 16 12 C 0.13 4.46 4.33 45.10 0.20 4.66 16 13 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 14 C 0.13 4.17 5.54 86.38 0.48 4.65 16 15 N -0.70 -20.47 5.48 -466.03 -2.55 -23.02 16 16 C 0.55 17.00 7.77 86.77 0.67 17.68 16 17 O -0.58 -21.61 16.35 -3.90 -0.06 -21.68 16 18 C -0.12 -3.07 5.87 -20.09 -0.12 -3.18 16 19 C -0.06 -1.16 9.54 22.52 0.21 -0.94 16 20 C -0.10 -1.56 9.81 22.25 0.22 -1.35 16 21 C -0.01 -0.25 6.33 22.42 0.14 -0.11 16 22 Cl -0.04 -0.63 27.94 -2.72 -0.08 -0.71 16 23 C -0.05 -0.99 6.32 22.31 0.14 -0.85 16 24 Cl -0.04 -0.83 27.94 -2.72 -0.08 -0.91 16 25 C -0.05 -1.14 9.37 22.55 0.21 -0.93 16 26 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 27 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.04 1.87 7.16 -2.38 -0.02 1.86 16 29 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.08 2.52 8.10 -2.39 -0.02 2.50 16 31 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.41 10.58 6.50 -92.71 -0.60 9.98 16 34 H 0.16 2.53 6.40 -2.91 -0.02 2.51 16 35 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 36 H 0.15 3.68 7.65 -2.91 -0.02 3.66 16 Total: -1.00 -66.50 340.49 1.95 -64.55 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.53 Total: 12.63 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 4.40 Total: 9.66 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -4.79 Total: -109.84 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.06 Total: -21.68 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.15 Total: -1.61 kcal Total: -66.50 1.95 -64.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038948049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.309 kcal (2) G-P(sol) polarization free energy of solvation -66.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds