Wall clock time and date at job start Tue Mar 31 2020 14:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99552 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99969 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.47067 * 136.05761 * 359.90715 * 9 7 2 11 11 C 1.53242 * 88.08303 * 207.20339 * 10 9 7 12 12 C 1.47062 * 136.05579 * 180.27778 * 9 7 2 13 13 H 1.08999 * 113.46806 * 267.68593 * 12 9 7 14 14 C 1.52999 * 113.47177 * 38.06475 * 12 9 7 15 15 N 1.46502 * 109.47059 * 285.49668 * 14 12 9 16 16 C 1.34777 * 120.00133 * 179.97438 * 15 14 12 17 17 O 1.21569 * 120.00044 * 359.97438 * 16 15 14 18 18 C 1.47688 * 120.00011 * 180.02562 * 16 15 14 19 19 C 1.39742 * 120.17257 * 89.72829 * 18 16 15 20 20 Cl 1.73596 * 120.08116 * 359.97438 * 19 18 16 21 21 C 1.38097 * 119.83229 * 179.74526 * 19 18 16 22 22 C 1.38324 * 120.16512 * 0.52838 * 21 19 18 23 23 C 1.38335 * 120.34533 * 359.72182 * 22 21 19 24 24 C 1.38098 * 120.16152 * 0.02562 * 23 22 21 25 25 Cl 1.73605 * 120.08054 * 179.97438 * 24 23 22 26 26 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 27 27 H 1.08994 * 113.46791 * 321.93462 * 10 9 7 28 28 H 1.08998 * 113.46769 * 92.37557 * 10 9 7 29 29 H 1.09000 * 114.32233 * 220.47512 * 11 10 9 30 30 H 1.09000 * 114.01834 * 87.71301 * 11 10 9 31 31 H 1.09001 * 109.47004 * 45.49065 * 14 12 9 32 32 H 1.08997 * 109.47658 * 165.49898 * 14 12 9 33 33 H 0.97004 * 120.00240 * 359.97438 * 15 14 12 34 34 H 1.08000 * 119.91605 * 180.27387 * 21 19 18 35 35 H 1.08004 * 119.83228 * 179.75096 * 22 21 19 36 36 H 1.07996 * 119.92137 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.0877 -2.7948 0.0155 11 6 0.3423 -4.0882 0.7159 12 6 1.6800 -3.8153 0.0143 13 1 1.7455 -4.2516 -0.9824 14 6 2.8992 -4.1359 0.8813 15 7 4.1156 -3.6891 0.1978 16 6 5.3189 -3.8683 0.7777 17 8 5.3950 -4.4003 1.8682 18 6 6.5451 -3.4173 0.0889 19 6 7.0283 -2.1218 0.2913 20 17 6.1882 -1.0359 1.3536 21 6 8.1784 -1.7092 -0.3522 22 6 8.8456 -2.5711 -1.2039 23 6 8.3707 -3.8534 -1.4134 24 6 7.2248 -4.2822 -0.7730 25 17 6.6303 -5.8916 -1.0381 26 1 -0.4850 0.8400 -0.0004 27 1 -0.7191 -2.1572 0.6342 28 1 -0.4989 -2.9568 -0.9809 29 1 -0.1728 -4.9820 0.3639 30 1 0.3838 -4.0117 1.8024 31 1 2.8102 -3.6211 1.8380 32 1 2.9520 -5.2113 1.0508 33 1 4.0549 -3.2642 -0.6721 34 1 8.5555 -0.7098 -0.1934 35 1 9.7424 -2.2415 -1.7075 36 1 8.8973 -4.5207 -2.0795 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038949238.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:51 Heat of formation + Delta-G solvation = 35.601893 kcal Electronic energy + Delta-G solvation = -23357.558637 eV Core-core repulsion = 19702.452284 eV Total energy + Delta-G solvation = -3655.106353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22766 -38.75469 -37.90415 -36.90776 -36.37843 -34.06969 -32.23293 -31.59312 -30.95324 -28.08106 -27.61008 -24.14248 -23.47002 -23.05380 -21.90375 -20.47760 -19.28880 -18.16094 -17.00950 -16.50258 -16.37500 -15.86841 -15.21147 -15.11551 -14.61626 -14.25223 -14.03418 -13.94801 -13.71197 -13.25704 -12.88370 -12.58344 -12.45726 -12.06567 -11.83290 -11.53011 -11.27633 -11.26443 -11.11810 -11.00116 -10.99394 -10.78081 -10.56502 -10.07328 -9.82138 -9.77347 -9.24769 -9.18743 -8.98987 -8.81470 -8.61148 -6.89979 -5.76814 -3.09004 0.59820 0.69596 1.63749 2.09668 2.72478 3.04725 3.36462 3.41030 3.43431 3.44955 4.41336 4.43856 4.61725 4.72119 4.82689 5.04603 5.14363 5.22252 5.39909 5.56411 5.63986 5.68743 5.75079 5.84390 5.91502 6.09251 6.17320 6.31529 6.40019 6.59319 6.69672 6.83072 7.23210 7.39322 7.58535 7.77966 7.97723 8.40696 9.03614 9.70731 10.62733 11.40606 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.005250 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.031989 B = 5332.052165 C = 6879.565953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.210 4.210 8 H 0.083 0.917 9 N -0.601 5.601 10 C 0.152 3.848 11 C -0.160 4.160 12 C 0.127 3.873 13 H 0.049 0.951 14 C 0.122 3.878 15 N -0.696 5.696 16 C 0.561 3.439 17 O -0.528 6.528 18 C -0.105 4.105 19 C 0.002 3.998 20 Cl -0.028 7.028 21 C -0.109 4.109 22 C -0.083 4.083 23 C -0.111 4.111 24 C 0.001 3.999 25 Cl -0.045 7.045 26 H 0.252 0.748 27 H 0.071 0.929 28 H 0.025 0.975 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.405 0.595 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.766 -8.015 -3.913 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.337 4.337 8 H 0.100 0.900 9 N -0.326 5.326 10 C 0.026 3.974 11 C -0.199 4.199 12 C 0.020 3.980 13 H 0.066 0.934 14 C -0.002 4.002 15 N -0.345 5.345 16 C 0.344 3.656 17 O -0.405 6.405 18 C -0.110 4.110 19 C -0.026 4.026 20 Cl 0.002 6.998 21 C -0.128 4.128 22 C -0.102 4.102 23 C -0.130 4.130 24 C -0.027 4.027 25 Cl -0.016 7.016 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.239 0.761 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.684 -8.067 -3.047 17.898 hybrid contribution 0.314 1.206 -0.532 1.355 sum 15.997 -6.861 -3.579 17.771 Atomic orbital electron populations 1.69828 1.04945 1.25078 1.56706 1.24735 0.95572 0.97297 1.02675 0.86210 0.79178 0.84266 0.77314 1.20044 1.21769 1.21769 1.18916 0.90093 0.81230 1.43463 0.89974 1.45670 1.02576 0.98533 1.85868 1.21967 0.88712 0.90216 0.96488 1.23617 0.96837 0.99092 1.00402 1.22424 0.91905 0.87872 0.95841 0.93367 1.21890 0.82694 0.98401 0.97237 1.45896 1.05451 1.60108 1.23011 1.17768 0.83011 0.79427 0.85384 1.90796 1.86618 1.43254 1.19791 1.19838 0.98524 0.93104 0.99554 1.20957 0.95094 0.90379 0.96177 1.98475 1.76473 1.61874 1.63026 1.21167 0.93639 1.01301 0.96668 1.21198 0.99687 0.92449 0.96849 1.21096 0.94771 0.97051 1.00085 1.20809 0.96141 0.87519 0.98190 1.98410 1.87703 1.20241 1.95217 0.93792 0.91024 0.95740 0.92310 0.90206 0.90804 0.92012 0.76077 0.83681 0.83715 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 11.51 55.49 0.64 -26.28 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.90 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.21 -5.57 10.55 -15.06 -0.16 -5.73 16 8 H 0.08 2.11 7.51 -52.49 -0.39 1.71 16 9 N -0.60 -14.49 3.65 -177.16 -0.65 -15.14 16 10 C 0.15 3.45 7.38 -8.64 -0.06 3.39 16 11 C -0.16 -2.90 8.02 -26.35 -0.21 -3.11 16 12 C 0.13 2.44 4.11 -72.40 -0.30 2.14 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 14 C 0.12 2.22 5.52 -4.04 -0.02 2.20 16 15 N -0.70 -12.29 5.33 -61.30 -0.33 -12.62 16 16 C 0.56 10.02 5.36 -12.40 -0.07 9.95 16 17 O -0.53 -10.96 17.11 5.30 0.09 -10.87 16 18 C -0.11 -1.60 5.64 -104.91 -0.59 -2.19 16 19 C 0.00 0.03 6.35 -39.07 -0.25 -0.22 16 20 Cl -0.03 -0.46 28.04 -51.86 -1.45 -1.92 16 21 C -0.11 -1.14 9.82 -39.60 -0.39 -1.53 16 22 C -0.08 -0.69 10.03 -39.51 -0.40 -1.09 16 23 C -0.11 -1.04 9.82 -39.60 -0.39 -1.43 16 24 C 0.00 0.01 6.35 -39.07 -0.25 -0.23 16 25 Cl -0.04 -0.56 28.04 -51.86 -1.45 -2.02 16 26 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.07 1.83 7.13 -51.93 -0.37 1.46 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 31 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.40 7.02 8.36 -40.82 -0.34 6.67 16 34 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.15 0.69 8.06 -52.48 -0.42 0.26 16 36 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 343.31 15.07 5.17 5.17 Total: -1.00 -32.11 343.31 -10.22 -42.34 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -4.04 Total: 2.49 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -3.18 Total: 1.88 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.34 Total: -54.04 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -2.91 Total: -3.93 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.11 -10.22 -42.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038949238.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.940 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds