Wall clock time and date at job start Tue Mar 31 2020 15:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34785 * 119.99966 * 2 1 4 4 O 1.21552 * 119.99914 * 185.80908 * 3 2 1 5 5 C 1.47783 * 119.99948 * 5.81430 * 3 2 1 6 6 C 1.39639 * 120.12510 * 35.02689 * 5 3 2 7 7 C 1.37884 * 119.88880 * 180.02562 * 6 5 3 8 8 C 1.38505 * 120.14937 * 0.02654 * 7 6 5 9 9 Cl 1.73602 * 119.87402 * 179.97438 * 8 7 6 10 10 C 1.38599 * 120.25438 * 359.97253 * 8 7 6 11 11 Cl 1.73597 * 119.94876 * 180.02562 * 10 8 7 12 12 C 1.38033 * 120.09975 * 359.72218 * 10 8 7 13 13 C 1.46496 * 120.00136 * 179.97438 * 2 1 3 14 14 C 1.53490 * 114.20847 * 300.00473 * 13 2 1 15 15 N 1.47063 * 87.98685 * 87.71420 * 14 13 2 16 16 C 1.36940 * 136.05863 * 207.08280 * 15 14 13 17 17 H 1.07997 * 119.99809 * 354.96514 * 16 15 14 18 18 C 1.38811 * 119.99988 * 174.95973 * 16 15 14 19 19 N 1.31616 * 119.99811 * 184.67014 * 18 16 15 20 20 Si 1.86797 * 119.99950 * 4.66696 * 18 16 15 21 21 H 1.48503 * 109.47296 * 174.48347 * 20 18 16 22 22 H 1.48504 * 109.47340 * 294.48162 * 20 18 16 23 23 H 1.48498 * 109.47578 * 54.48278 * 20 18 16 24 24 C 1.47067 * 87.88407 * 27.34222 * 15 14 13 25 25 H 1.08995 * 109.47056 * 274.61035 * 1 2 3 26 26 H 1.09004 * 109.46759 * 34.61069 * 1 2 3 27 27 H 1.08997 * 109.47229 * 154.60335 * 1 2 3 28 28 H 1.07998 * 120.05316 * 0.02562 * 6 5 3 29 29 H 1.08011 * 119.92520 * 179.97438 * 7 6 5 30 30 H 1.08005 * 120.07119 * 180.29441 * 12 10 8 31 31 H 1.08999 * 113.28158 * 166.93225 * 13 2 1 32 32 H 1.09003 * 113.46982 * 332.93187 * 14 13 2 33 33 H 1.09002 * 113.46868 * 202.49598 * 14 13 2 34 34 H 0.96994 * 120.00665 * 4.99648 * 19 18 16 35 35 H 1.09001 * 113.46480 * 87.44196 * 24 15 14 36 36 H 1.08995 * 113.46950 * 217.87457 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3498 1.1700 -0.1065 5 6 1.4057 2.4438 0.1297 6 6 0.2645 2.5183 0.9309 7 6 -0.4162 3.7117 1.0480 8 6 0.0292 4.8357 0.3724 9 17 -0.8337 6.3344 0.5244 10 6 1.1612 4.7687 -0.4245 11 17 1.7129 6.1826 -1.2672 12 6 1.8542 3.5809 -0.5441 13 6 2.1975 -1.2687 0.0006 14 6 1.9060 -2.1632 1.2133 15 7 0.7773 -2.7291 0.4592 16 6 -0.4241 -3.3086 0.7692 17 1 -0.6795 -3.5035 1.8002 18 6 -1.3136 -3.6455 -0.2419 19 7 -2.5047 -4.1172 0.0598 20 14 -0.8200 -3.4293 -2.0304 21 1 -1.8838 -3.9810 -2.9077 22 1 -0.6374 -1.9848 -2.3225 23 1 0.4533 -4.1503 -2.2833 24 6 1.5095 -2.4046 -0.7743 25 1 -0.3633 0.0826 1.0243 26 1 -0.3633 0.8458 -0.5837 27 1 -0.3633 -0.9283 -0.4407 28 1 -0.0844 1.6426 1.4580 29 1 -1.2992 3.7698 1.6672 30 1 2.7390 3.5304 -1.1615 31 1 3.2576 -1.1542 -0.2259 32 1 1.6006 -1.6071 2.0996 33 1 2.6957 -2.8856 1.4197 34 1 -2.7885 -4.1616 0.9862 35 1 2.1947 -3.1906 -1.0919 36 1 0.8663 -2.0540 -1.5814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044220475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:37 Heat of formation + Delta-G solvation = 65.159182 kcal Electronic energy + Delta-G solvation = -23300.978562 eV Core-core repulsion = 19647.153909 eV Total energy + Delta-G solvation = -3653.824653 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73680 -39.31837 -38.00132 -36.86184 -36.72358 -34.52446 -32.50116 -31.42876 -31.01299 -28.31929 -26.62177 -25.46992 -24.54246 -23.19722 -22.40781 -20.61277 -18.90772 -17.86170 -17.47511 -17.14944 -16.54126 -16.13934 -15.63050 -15.01692 -14.78779 -14.44265 -14.19852 -14.13424 -13.81261 -13.47842 -13.17228 -12.92965 -12.51115 -12.26037 -12.20564 -12.11700 -11.68133 -11.48896 -11.41723 -11.28684 -11.11945 -11.01263 -10.75094 -10.45317 -9.93117 -9.37397 -9.35104 -9.27507 -9.04984 -9.01908 -8.34404 -7.27520 -6.41988 -3.35957 0.31044 0.72473 1.47236 1.82314 2.51577 3.00183 3.23523 3.31121 3.34421 3.53762 4.25495 4.30231 4.45451 4.61268 4.66506 4.77374 4.87221 5.02815 5.28919 5.34274 5.42386 5.47994 5.59789 5.69396 5.79994 5.82388 5.89836 6.09981 6.11434 6.13642 6.22226 6.27856 6.52479 6.83997 6.96140 7.53912 8.11948 8.14309 8.85390 9.36579 10.22603 11.09118 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018221 B = 0.003416 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.295541 B = 8195.736943 C = 8815.086902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.571 5.571 3 C 0.558 3.442 4 O -0.538 6.538 5 C -0.106 4.106 6 C -0.073 4.073 7 C -0.105 4.105 8 C -0.013 4.013 9 Cl -0.047 7.047 10 C -0.041 4.041 11 Cl -0.046 7.046 12 C -0.046 4.046 13 C 0.097 3.903 14 C 0.111 3.889 15 N -0.625 5.625 16 C -0.302 4.302 17 H 0.083 0.917 18 C -0.021 4.021 19 N -0.932 5.932 20 Si 1.066 2.934 21 H -0.294 1.294 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.078 3.922 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.110 0.890 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.262 0.738 35 H 0.057 0.943 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.752 18.946 -0.014 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.301 5.301 3 C 0.346 3.654 4 O -0.416 6.416 5 C -0.110 4.110 6 C -0.091 4.091 7 C -0.124 4.124 8 C -0.041 4.041 9 Cl -0.018 7.018 10 C -0.068 4.068 11 Cl -0.017 7.017 12 C -0.066 4.066 13 C -0.007 4.007 14 C -0.016 4.016 15 N -0.354 5.354 16 C -0.428 4.428 17 H 0.100 0.900 18 C -0.220 4.220 19 N -0.574 5.574 20 Si 0.899 3.101 21 H -0.221 1.221 22 H -0.219 1.219 23 H -0.216 1.216 24 C -0.047 4.047 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.125 0.875 28 H 0.174 0.826 29 H 0.168 0.832 30 H 0.170 0.830 31 H 0.127 0.873 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.584 18.800 -1.619 19.679 hybrid contribution 0.410 0.286 1.613 1.688 sum 5.995 19.086 -0.006 20.005 Atomic orbital electron populations 1.22286 0.78183 1.04788 1.01866 1.47266 1.07646 1.04544 1.70660 1.18085 0.86920 0.83196 0.77220 1.90770 1.13455 1.87157 1.50252 1.19990 0.96705 0.94196 1.00096 1.21932 0.92475 0.98497 0.96223 1.21051 1.01213 0.90350 0.99739 1.21014 0.94075 0.89442 0.99600 1.98400 1.75508 1.31169 1.96681 1.20593 0.96378 0.90195 0.99656 1.98395 1.88948 1.38262 1.76064 1.21055 0.98839 0.88933 0.97773 1.22551 0.95874 0.82671 0.99649 1.22768 0.90632 0.93246 0.94958 1.46314 1.15343 1.72554 1.01232 1.20144 0.89079 1.38399 0.95219 0.89957 1.25610 0.94001 0.98513 1.03925 1.70903 1.18501 1.47139 1.20859 0.83824 0.74686 0.75316 0.76262 1.22145 1.21910 1.21610 1.23295 0.94570 0.93961 0.92924 0.92075 0.92205 0.87471 0.82569 0.83204 0.83038 0.87270 0.93269 0.93214 0.92759 0.92521 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 8.05 59.85 0.48 1.61 16 2 N -0.57 -9.29 3.12 -174.70 -0.54 -9.83 16 3 C 0.56 8.69 7.36 -12.35 -0.09 8.60 16 4 O -0.54 -9.65 16.32 5.32 0.09 -9.57 16 5 C -0.11 -1.36 5.17 -104.97 -0.54 -1.90 16 6 C -0.07 -0.79 7.80 -39.19 -0.31 -1.10 16 7 C -0.10 -1.00 9.81 -39.61 -0.39 -1.39 16 8 C -0.01 -0.14 6.33 -39.35 -0.25 -0.39 16 9 Cl -0.05 -0.45 27.94 -51.86 -1.45 -1.90 16 10 C -0.04 -0.45 6.32 -39.52 -0.25 -0.70 16 11 Cl -0.05 -0.47 27.94 -51.86 -1.45 -1.92 16 12 C -0.05 -0.55 9.39 -39.16 -0.37 -0.91 16 13 C 0.10 1.67 4.69 -67.69 -0.32 1.35 16 14 C 0.11 2.04 8.31 -8.52 -0.07 1.97 16 15 N -0.63 -13.86 2.40 -184.64 -0.44 -14.30 16 16 C -0.30 -7.92 10.56 -15.06 -0.16 -8.08 16 17 H 0.08 2.31 8.05 -52.49 -0.42 1.89 16 18 C -0.02 -0.58 5.47 -17.43 -0.10 -0.68 16 19 N -0.93 -27.61 13.70 55.49 0.76 -26.85 16 20 Si 1.07 25.00 24.18 -169.99 -4.11 20.89 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.29 -6.21 5.77 56.52 0.33 -5.88 16 23 H -0.29 -6.49 6.73 56.52 0.38 -6.11 16 24 C 0.08 1.53 5.00 -8.38 -0.04 1.49 16 25 H 0.06 0.91 6.39 -51.93 -0.33 0.58 16 26 H 0.06 0.82 6.49 -51.93 -0.34 0.48 16 27 H 0.11 2.11 3.59 -51.93 -0.19 1.92 16 28 H 0.16 1.63 5.23 -52.49 -0.27 1.35 16 29 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 30 H 0.15 1.73 8.00 -52.48 -0.42 1.31 16 31 H 0.11 1.77 7.26 -51.93 -0.38 1.39 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.26 7.69 8.73 -40.82 -0.36 7.33 16 35 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 36 H 0.06 1.24 3.41 -51.93 -0.18 1.06 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -29.77 319.04 -8.20 -37.97 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -3.46 Total: 0.80 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -2.40 Total: -0.12 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.23 Total: -50.98 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -4.11 Total: 20.89 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -2.90 Total: -3.81 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.77 -8.20 -37.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044220475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.127 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds