Wall clock time and date at job start Tue Mar 31 2020 15:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 120.00039 * 2 1 4 4 O 1.21566 * 120.00028 * 183.54015 * 3 2 1 5 5 C 1.47708 * 120.00014 * 3.54426 * 3 2 1 6 6 C 1.39668 * 120.14552 * 24.78098 * 5 3 2 7 7 C 1.37837 * 119.88276 * 179.73006 * 6 5 3 8 8 C 1.38577 * 120.16565 * 0.57286 * 7 6 5 9 9 Cl 1.73601 * 119.85389 * 179.72409 * 8 7 6 10 10 C 1.38420 * 120.28785 * 359.70303 * 8 7 6 11 11 C 1.38088 * 120.12043 * 359.97438 * 10 8 7 12 12 Cl 1.73597 * 120.08810 * 180.02562 * 11 10 8 13 13 C 1.46501 * 119.99763 * 179.97438 * 2 1 3 14 14 C 1.53491 * 114.20626 * 299.99968 * 13 2 1 15 15 N 1.47067 * 87.98531 * 87.72092 * 14 13 2 16 16 C 1.36934 * 136.05908 * 207.08259 * 15 14 13 17 17 H 1.08000 * 120.00013 * 354.93125 * 16 15 14 18 18 C 1.38811 * 120.00152 * 174.92687 * 16 15 14 19 19 N 1.31615 * 120.00614 * 183.73343 * 18 16 15 20 20 Si 1.86805 * 119.99658 * 3.72911 * 18 16 15 21 21 H 1.48510 * 109.46884 * 174.95435 * 20 18 16 22 22 H 1.48489 * 109.47545 * 294.95575 * 20 18 16 23 23 H 1.48503 * 109.47029 * 54.96271 * 20 18 16 24 24 C 1.47070 * 87.88416 * 27.33843 * 15 14 13 25 25 H 1.08997 * 109.47368 * 264.22739 * 1 2 3 26 26 H 1.08997 * 109.47230 * 24.22990 * 1 2 3 27 27 H 1.09000 * 109.47107 * 144.22639 * 1 2 3 28 28 H 1.08002 * 120.05793 * 0.02657 * 6 5 3 29 29 H 1.08002 * 119.91538 * 180.27934 * 7 6 5 30 30 H 1.08002 * 119.94069 * 180.02562 * 10 8 7 31 31 H 1.09000 * 113.27971 * 166.93678 * 13 2 1 32 32 H 1.08999 * 113.47464 * 332.93900 * 14 13 2 33 33 H 1.09008 * 113.46967 * 202.49608 * 14 13 2 34 34 H 0.96998 * 119.99451 * 5.00510 * 19 18 16 35 35 H 1.09000 * 113.46450 * 87.43628 * 24 15 14 36 36 H 1.08997 * 113.46981 * 217.87641 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3528 1.1682 -0.0650 5 6 1.4025 2.4452 0.0791 6 6 0.1311 2.4876 0.6558 7 6 -0.5489 3.6841 0.7318 8 6 0.0207 4.8421 0.2269 9 17 -0.8460 6.3434 0.3204 10 6 1.2779 4.8070 -0.3513 11 6 1.9725 3.6160 -0.4277 12 17 3.5494 3.5731 -1.1524 13 6 2.1975 -1.2688 0.0006 14 6 1.9059 -2.1632 1.2134 15 7 0.7772 -2.7291 0.4592 16 6 -0.4241 -3.3086 0.7692 17 1 -0.6794 -3.5039 1.8003 18 6 -1.3139 -3.6450 -0.2417 19 7 -2.4981 -4.1340 0.0595 20 14 -0.8305 -3.4035 -2.0299 21 1 -1.8967 -3.9479 -2.9087 22 1 -0.6549 -1.9547 -2.3039 23 1 0.4443 -4.1163 -2.2986 24 6 1.5094 -2.4046 -0.7743 25 1 -0.3634 -0.1034 1.0224 26 1 -0.3633 0.9371 -0.4217 27 1 -0.3633 -0.8338 -0.6008 28 1 -0.3163 1.5853 1.0458 29 1 -1.5302 3.7183 1.1817 30 1 1.7167 5.7130 -0.7427 31 1 3.2575 -1.1543 -0.2258 32 1 1.6005 -1.6071 2.0996 33 1 2.6957 -2.8857 1.4199 34 1 -2.7774 -4.1916 0.9866 35 1 2.1947 -3.1906 -1.0917 36 1 0.8663 -2.0541 -1.5814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044221692.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:40 Heat of formation + Delta-G solvation = 83.810498 kcal Electronic energy + Delta-G solvation = -23544.511921 eV Core-core repulsion = 19891.496050 eV Total energy + Delta-G solvation = -3653.015871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76083 -39.24957 -37.88681 -36.90795 -36.50409 -34.57555 -32.51862 -31.33172 -31.04075 -28.28431 -26.73938 -25.46500 -24.40047 -23.18542 -22.34467 -20.61335 -18.90896 -17.74604 -17.39451 -17.24689 -16.50088 -16.00088 -15.47699 -15.04566 -14.80858 -14.35503 -14.22405 -13.96466 -13.77038 -13.47759 -13.11217 -12.91453 -12.49046 -12.47346 -12.25887 -12.03389 -11.53257 -11.45991 -11.28134 -11.15881 -10.97602 -10.92905 -10.63435 -10.43442 -9.67975 -9.32060 -9.25533 -9.20746 -9.03566 -9.03314 -8.26853 -7.25178 -6.39828 -3.33371 0.31540 0.73796 1.51658 2.03274 2.60543 3.02786 3.24681 3.35574 3.38029 3.55226 4.30254 4.37639 4.47262 4.58131 4.65995 4.78809 4.91733 5.06410 5.23686 5.31614 5.44799 5.48629 5.68408 5.72666 5.75616 5.83929 5.88627 6.12076 6.13276 6.14657 6.22875 6.30583 6.51195 6.88055 6.99032 7.59012 8.13973 8.23733 8.87724 9.39209 10.25594 11.11432 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.003987 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.592159 B = 7021.457217 C = 8122.053005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.572 5.572 3 C 0.552 3.448 4 O -0.523 6.523 5 C -0.118 4.118 6 C -0.076 4.076 7 C -0.117 4.117 8 C -0.005 4.005 9 Cl -0.057 7.057 10 C -0.117 4.117 11 C 0.023 3.977 12 Cl -0.026 7.026 13 C 0.100 3.900 14 C 0.111 3.889 15 N -0.625 5.625 16 C -0.301 4.301 17 H 0.082 0.918 18 C -0.022 4.022 19 N -0.933 5.933 20 Si 1.067 2.933 21 H -0.295 1.295 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.079 3.921 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.171 0.829 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.110 0.890 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.262 0.738 35 H 0.057 0.943 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.907 19.218 -0.466 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.302 5.302 3 C 0.340 3.660 4 O -0.400 6.400 5 C -0.122 4.122 6 C -0.095 4.095 7 C -0.136 4.136 8 C -0.032 4.032 9 Cl -0.028 7.028 10 C -0.137 4.137 11 C -0.005 4.005 12 Cl 0.004 6.996 13 C -0.005 4.005 14 C -0.016 4.016 15 N -0.354 5.354 16 C -0.427 4.427 17 H 0.100 0.900 18 C -0.221 4.221 19 N -0.576 5.576 20 Si 0.901 3.099 21 H -0.222 1.222 22 H -0.219 1.219 23 H -0.217 1.217 24 C -0.046 4.046 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.188 0.812 29 H 0.165 0.835 30 H 0.166 0.834 31 H 0.127 0.873 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.854 18.950 -2.047 19.939 hybrid contribution 0.462 0.173 1.598 1.673 sum 6.316 19.123 -0.449 20.144 Atomic orbital electron populations 1.22549 0.78731 1.03391 1.03071 1.47220 1.07394 1.04603 1.71001 1.17980 0.87143 0.83050 0.77829 1.90813 1.12763 1.86874 1.49528 1.19946 0.95740 0.93686 1.02815 1.22311 0.92228 0.99376 0.95559 1.21185 1.01535 0.90434 1.00406 1.21005 0.93251 0.88189 1.00753 1.98396 1.75904 1.31628 1.96830 1.20840 0.93503 0.97729 1.01614 1.20798 0.89042 0.93065 0.97621 1.98426 1.22260 1.98583 1.80376 1.22521 0.95860 0.82597 0.99516 1.22768 0.90609 0.93241 0.95008 1.46272 1.15349 1.72582 1.01228 1.20138 0.89159 1.38188 0.95191 0.90015 1.25599 0.94037 0.98515 1.03917 1.70909 1.19113 1.46766 1.20765 0.83809 0.74624 0.75229 0.76254 1.22224 1.21921 1.21672 1.23276 0.94526 0.93966 0.92879 0.91348 0.91089 0.88693 0.81239 0.83526 0.83397 0.87266 0.93302 0.93270 0.92809 0.92593 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.03 7.69 59.85 0.46 1.49 16 2 N -0.57 -9.53 3.12 -174.73 -0.54 -10.08 16 3 C 0.55 8.93 7.36 -12.39 -0.09 8.84 16 4 O -0.52 -9.47 14.05 5.31 0.07 -9.39 16 5 C -0.12 -1.59 5.52 -104.93 -0.58 -2.17 16 6 C -0.08 -0.86 7.51 -39.19 -0.29 -1.16 16 7 C -0.12 -1.12 9.81 -39.60 -0.39 -1.51 16 8 C 0.00 -0.05 6.33 -39.39 -0.25 -0.29 16 9 Cl -0.06 -0.49 28.95 -51.86 -1.50 -1.99 16 10 C -0.12 -1.20 9.60 -39.57 -0.38 -1.58 16 11 C 0.02 0.29 6.34 -39.08 -0.25 0.04 16 12 Cl -0.03 -0.34 26.36 -51.86 -1.37 -1.71 16 13 C 0.10 1.75 4.69 -67.68 -0.32 1.44 16 14 C 0.11 2.08 8.31 -8.51 -0.07 2.01 16 15 N -0.63 -14.04 2.43 -184.62 -0.45 -14.49 16 16 C -0.30 -7.95 10.92 -15.06 -0.16 -8.11 16 17 H 0.08 2.32 8.05 -52.49 -0.42 1.89 16 18 C -0.02 -0.60 5.50 -17.43 -0.10 -0.69 16 19 N -0.93 -27.80 13.70 55.49 0.76 -27.04 16 20 Si 1.07 25.24 24.23 -169.99 -4.12 21.12 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -6.25 5.50 56.52 0.31 -5.94 16 23 H -0.29 -6.58 6.71 56.52 0.38 -6.20 16 24 C 0.08 1.58 5.01 -8.37 -0.04 1.54 16 25 H 0.07 1.08 7.21 -51.93 -0.37 0.71 16 26 H 0.07 0.95 4.96 -51.93 -0.26 0.69 16 27 H 0.09 1.85 4.05 -51.93 -0.21 1.64 16 28 H 0.17 1.85 4.39 -52.49 -0.23 1.62 16 29 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.11 1.82 7.27 -51.93 -0.38 1.44 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.26 7.72 8.73 -40.82 -0.36 7.36 16 35 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 36 H 0.06 1.23 3.30 -51.93 -0.17 1.06 16 LS Contribution 315.20 15.07 4.75 4.75 Total: -1.00 -30.19 315.20 -8.28 -38.47 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -3.42 Total: 0.52 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.46 Total: -0.16 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.23 Total: -51.60 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.39 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -4.12 Total: 21.12 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -2.87 Total: -3.70 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.19 -8.28 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044221692.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.279 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds