Wall clock time and date at job start Tue Mar 31 2020 15:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 120.00039 * 2 1 4 4 O 1.21566 * 120.00028 * 183.54015 * 3 2 1 5 5 C 1.47708 * 120.00014 * 3.54426 * 3 2 1 6 6 C 1.39668 * 120.14552 * 24.78098 * 5 3 2 7 7 C 1.37837 * 119.88276 * 179.73006 * 6 5 3 8 8 C 1.38577 * 120.16565 * 0.57286 * 7 6 5 9 9 Cl 1.73601 * 119.85389 * 179.72409 * 8 7 6 10 10 C 1.38420 * 120.28785 * 359.70303 * 8 7 6 11 11 C 1.38088 * 120.12043 * 359.97438 * 10 8 7 12 12 Cl 1.73597 * 120.08810 * 180.02562 * 11 10 8 13 13 C 1.46501 * 119.99763 * 179.97438 * 2 1 3 14 14 C 1.53491 * 114.20626 * 299.99968 * 13 2 1 15 15 N 1.47067 * 87.98531 * 87.72092 * 14 13 2 16 16 C 1.36934 * 136.05908 * 207.08259 * 15 14 13 17 17 H 1.08000 * 120.00013 * 354.93125 * 16 15 14 18 18 C 1.38811 * 120.00152 * 174.92687 * 16 15 14 19 19 N 1.31615 * 120.00614 * 183.73343 * 18 16 15 20 20 Si 1.86805 * 119.99658 * 3.72911 * 18 16 15 21 21 H 1.48510 * 109.46884 * 174.95435 * 20 18 16 22 22 H 1.48489 * 109.47545 * 294.95575 * 20 18 16 23 23 H 1.48503 * 109.47029 * 54.96271 * 20 18 16 24 24 C 1.47070 * 87.88416 * 27.33843 * 15 14 13 25 25 H 1.08997 * 109.47368 * 264.22739 * 1 2 3 26 26 H 1.08997 * 109.47230 * 24.22990 * 1 2 3 27 27 H 1.09000 * 109.47107 * 144.22639 * 1 2 3 28 28 H 1.08002 * 120.05793 * 0.02657 * 6 5 3 29 29 H 1.08002 * 119.91538 * 180.27934 * 7 6 5 30 30 H 1.08002 * 119.94069 * 180.02562 * 10 8 7 31 31 H 1.09000 * 113.27971 * 166.93678 * 13 2 1 32 32 H 1.08999 * 113.47464 * 332.93900 * 14 13 2 33 33 H 1.09008 * 113.46967 * 202.49608 * 14 13 2 34 34 H 0.96998 * 119.99451 * 5.00510 * 19 18 16 35 35 H 1.09000 * 113.46450 * 87.43628 * 24 15 14 36 36 H 1.08997 * 113.46981 * 217.87641 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3528 1.1682 -0.0650 5 6 1.4025 2.4452 0.0791 6 6 0.1311 2.4876 0.6558 7 6 -0.5489 3.6841 0.7318 8 6 0.0207 4.8421 0.2269 9 17 -0.8460 6.3434 0.3204 10 6 1.2779 4.8070 -0.3513 11 6 1.9725 3.6160 -0.4277 12 17 3.5494 3.5731 -1.1524 13 6 2.1975 -1.2688 0.0006 14 6 1.9059 -2.1632 1.2134 15 7 0.7772 -2.7291 0.4592 16 6 -0.4241 -3.3086 0.7692 17 1 -0.6794 -3.5039 1.8003 18 6 -1.3139 -3.6450 -0.2417 19 7 -2.4981 -4.1340 0.0595 20 14 -0.8305 -3.4035 -2.0299 21 1 -1.8967 -3.9479 -2.9087 22 1 -0.6549 -1.9547 -2.3039 23 1 0.4443 -4.1163 -2.2986 24 6 1.5094 -2.4046 -0.7743 25 1 -0.3634 -0.1034 1.0224 26 1 -0.3633 0.9371 -0.4217 27 1 -0.3633 -0.8338 -0.6008 28 1 -0.3163 1.5853 1.0458 29 1 -1.5302 3.7183 1.1817 30 1 1.7167 5.7130 -0.7427 31 1 3.2575 -1.1543 -0.2258 32 1 1.6005 -1.6071 2.0996 33 1 2.6957 -2.8857 1.4199 34 1 -2.7774 -4.1916 0.9866 35 1 2.1947 -3.1906 -1.0917 36 1 0.8663 -2.0541 -1.5814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044221692.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:39 Heat of formation + Delta-G solvation = 66.042409 kcal Electronic energy + Delta-G solvation = -23545.282403 eV Core-core repulsion = 19891.496050 eV Total energy + Delta-G solvation = -3653.786353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.95501 -40.45259 -39.15356 -37.76695 -37.39804 -35.92072 -34.48731 -32.34063 -31.95704 -29.98761 -28.09792 -27.02820 -25.64562 -24.08702 -23.83550 -21.95795 -20.39658 -19.47035 -18.56744 -18.33894 -17.81397 -17.07527 -16.84248 -16.32707 -15.90081 -15.77122 -15.48958 -15.28225 -15.10117 -14.88453 -14.54328 -14.15787 -13.61589 -13.42701 -13.35286 -13.28174 -13.10388 -12.64320 -12.61158 -12.43980 -12.20084 -12.13753 -12.05863 -11.80471 -11.27266 -11.10585 -10.97655 -10.83089 -10.10293 -9.94528 -9.61789 -9.16634 -8.56801 -5.41996 -0.60435 -0.09691 0.69936 1.15412 1.37638 1.47811 1.53760 1.67592 1.79730 2.37398 2.54327 2.96392 3.24936 3.27394 3.48468 3.58888 3.82016 3.92663 4.04182 4.14549 4.20900 4.32049 4.50902 4.53851 4.60841 4.64760 4.67826 4.78556 4.83715 4.88556 4.91590 5.07488 5.20663 5.29892 5.51705 5.99457 6.31068 6.74554 6.98174 7.36075 8.29717 8.97406 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.003987 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.592159 B = 7021.457217 C = 8122.053005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.577 5.577 3 C 0.554 3.446 4 O -0.545 6.545 5 C -0.138 4.138 6 C -0.076 4.076 7 C -0.107 4.107 8 C -0.001 4.001 9 Cl -0.041 7.041 10 C -0.110 4.110 11 C 0.013 3.987 12 Cl -0.038 7.038 13 C 0.117 3.883 14 C 0.112 3.888 15 N -0.647 5.647 16 C -0.277 4.277 17 H 0.051 0.949 18 C -0.072 4.072 19 N -0.973 5.973 20 Si 1.099 2.901 21 H -0.311 1.311 22 H -0.259 1.259 23 H -0.274 1.274 24 C 0.076 3.924 25 H 0.066 0.934 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.172 0.828 29 H 0.172 0.828 30 H 0.167 0.833 31 H 0.125 0.875 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.248 0.752 35 H 0.071 0.929 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.682 21.580 -1.003 22.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.308 5.308 3 C 0.343 3.657 4 O -0.424 6.424 5 C -0.142 4.142 6 C -0.095 4.095 7 C -0.126 4.126 8 C -0.029 4.029 9 Cl -0.012 7.012 10 C -0.130 4.130 11 C -0.015 4.015 12 Cl -0.009 7.009 13 C 0.012 3.988 14 C -0.014 4.014 15 N -0.376 5.376 16 C -0.405 4.405 17 H 0.069 0.931 18 C -0.264 4.264 19 N -0.618 5.618 20 Si 0.927 3.073 21 H -0.239 1.239 22 H -0.186 1.186 23 H -0.200 1.200 24 C -0.049 4.049 25 H 0.084 0.916 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.189 0.811 29 H 0.189 0.811 30 H 0.185 0.815 31 H 0.143 0.857 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.678 21.353 -2.564 22.520 hybrid contribution 0.247 -0.439 1.890 1.956 sum 6.926 20.915 -0.674 22.042 Atomic orbital electron populations 1.22516 0.78458 1.03535 1.02576 1.47285 1.07559 1.04579 1.71346 1.18338 0.86997 0.83556 0.76767 1.90795 1.13806 1.87263 1.50509 1.19824 0.96703 0.92645 1.04986 1.22291 0.91518 1.00231 0.95421 1.21439 1.02192 0.89608 0.99332 1.21111 0.93060 0.88865 0.99817 1.98411 1.75469 1.30665 1.96668 1.21023 0.93468 0.97593 1.00879 1.20891 0.88823 0.93563 0.98220 1.98419 1.23202 1.98625 1.80641 1.22322 0.96462 0.82373 0.97659 1.22936 0.89543 0.93576 0.95353 1.46232 1.15384 1.72344 1.03651 1.19916 0.90815 1.36078 0.93648 0.93117 1.26652 0.93653 0.98858 1.07274 1.71006 1.20928 1.50107 1.19782 0.83444 0.74443 0.77140 0.72238 1.23932 1.18624 1.19972 1.23441 0.94384 0.95171 0.91947 0.91563 0.88238 0.91853 0.81074 0.81071 0.81532 0.85748 0.93405 0.91473 0.94292 0.91145 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.17 7.69 127.77 0.98 3.16 16 2 N -0.58 -18.23 3.12 -825.00 -2.57 -20.80 16 3 C 0.55 16.98 7.36 86.75 0.64 17.62 16 4 O -0.55 -18.95 14.05 -3.92 -0.06 -19.01 16 5 C -0.14 -3.44 5.52 -20.07 -0.11 -3.55 16 6 C -0.08 -1.53 7.51 22.52 0.17 -1.36 16 7 C -0.11 -1.71 9.81 22.26 0.22 -1.49 16 8 C 0.00 -0.02 6.33 22.39 0.14 0.12 16 9 Cl -0.04 -0.58 28.95 -2.72 -0.08 -0.66 16 10 C -0.11 -1.96 9.60 22.28 0.21 -1.74 16 11 C 0.01 0.31 6.34 22.60 0.14 0.45 16 12 Cl -0.04 -0.96 26.36 -2.72 -0.07 -1.03 16 13 C 0.12 3.87 4.69 45.55 0.21 4.08 16 14 C 0.11 4.03 8.31 83.18 0.69 4.72 16 15 N -0.65 -28.46 2.43 -738.01 -1.80 -30.25 16 16 C -0.28 -14.83 10.92 84.03 0.92 -13.91 16 17 H 0.05 2.98 8.05 -2.91 -0.02 2.96 16 18 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 19 N -0.97 -59.64 13.70 21.65 0.30 -59.35 16 20 Si 1.10 50.57 24.23 68.60 1.66 52.23 16 21 H -0.31 -15.04 7.11 99.48 0.71 -14.33 16 22 H -0.26 -10.53 5.50 99.48 0.55 -9.98 16 23 H -0.27 -11.75 6.71 99.48 0.67 -11.08 16 24 C 0.08 2.86 5.01 83.26 0.42 3.28 16 25 H 0.07 2.03 7.21 -2.39 -0.02 2.01 16 26 H 0.10 2.44 4.96 -2.39 -0.01 2.43 16 27 H 0.06 2.38 4.05 -2.39 -0.01 2.37 16 28 H 0.17 3.36 4.39 -2.91 -0.01 3.35 16 29 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 30 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.12 3.82 7.27 -2.39 -0.02 3.80 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.25 15.28 8.73 -92.71 -0.81 14.47 16 35 H 0.07 2.50 8.09 -2.39 -0.02 2.48 16 36 H 0.06 2.14 3.30 -2.39 -0.01 2.14 16 Total: -1.00 -65.84 315.20 3.40 -62.44 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.91 Total: 8.61 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 5.10 Total: 7.82 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -4.07 Total: -110.40 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.06 Total: -19.01 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 1.66 Total: 52.23 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.15 Total: -1.69 kcal Total: -65.84 3.40 -62.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044221692.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.483 kcal (2) G-P(sol) polarization free energy of solvation -65.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds