Wall clock time and date at job start Tue Mar 31 2020 15:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 120.00079 * 2 1 4 4 O 1.21570 * 119.99809 * 179.97438 * 3 2 1 5 5 C 1.47696 * 119.99700 * 359.97438 * 3 2 1 6 6 C 1.39745 * 120.16347 * 89.72823 * 5 3 2 7 7 Cl 1.73593 * 120.08619 * 0.02562 * 6 5 3 8 8 C 1.38100 * 119.82490 * 179.76329 * 6 5 3 9 9 C 1.38333 * 120.16688 * 0.53404 * 8 6 5 10 10 C 1.38334 * 120.33846 * 359.70089 * 9 8 6 11 11 C 1.38091 * 120.17130 * 0.03760 * 10 9 8 12 12 Cl 1.73601 * 120.08675 * 180.02562 * 11 10 9 13 13 C 1.46502 * 120.00143 * 179.97438 * 2 1 3 14 14 C 1.53493 * 114.20505 * 60.00335 * 13 2 1 15 15 N 1.47058 * 87.98843 * 220.15099 * 14 13 2 16 16 C 1.36939 * 136.05576 * 206.86742 * 15 14 13 17 17 H 1.07999 * 120.00262 * 6.89608 * 16 15 14 18 18 C 1.38820 * 119.99870 * 186.90334 * 16 15 14 19 19 N 1.31623 * 119.99962 * 7.45800 * 18 16 15 20 20 Si 1.86800 * 119.99890 * 187.46108 * 18 16 15 21 21 H 1.48508 * 109.46943 * 94.79809 * 20 18 16 22 22 H 1.48498 * 109.46995 * 214.79830 * 20 18 16 23 23 H 1.48493 * 109.47191 * 334.80093 * 20 18 16 24 24 C 1.47065 * 87.88764 * 27.11926 * 15 14 13 25 25 H 1.08991 * 109.47757 * 270.00830 * 1 2 3 26 26 H 1.09002 * 109.46632 * 30.00968 * 1 2 3 27 27 H 1.09003 * 109.47195 * 150.00511 * 1 2 3 28 28 H 1.07999 * 119.91363 * 180.27144 * 8 6 5 29 29 H 1.07995 * 119.82960 * 179.71917 * 9 8 6 30 30 H 1.08004 * 119.90836 * 180.02562 * 10 9 8 31 31 H 1.08997 * 113.28423 * 193.07256 * 13 2 1 32 32 H 1.09000 * 113.46649 * 105.36252 * 14 13 2 33 33 H 1.09005 * 113.52085 * 334.94037 * 14 13 2 34 34 H 0.96998 * 119.99720 * 180.02562 * 19 18 16 35 35 H 1.09003 * 113.46183 * 87.65927 * 24 15 14 36 36 H 1.08992 * 113.47023 * 218.10216 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3546 1.1672 0.0005 5 6 1.4004 2.4463 -0.0006 6 6 1.0438 3.0518 1.2074 7 17 1.4684 2.3029 2.7148 8 6 0.3576 4.2502 1.1987 9 6 0.0136 4.8456 -0.0016 10 6 0.3588 4.2497 -1.2014 11 6 1.0497 3.0541 -1.2090 12 17 1.4824 2.3086 -2.7159 13 6 2.1975 -1.2687 0.0006 14 6 1.9061 -2.1643 -1.2115 15 7 1.9168 -3.3163 -0.2975 16 6 2.1849 -4.6551 -0.4018 17 1 2.5773 -5.0571 -1.3242 18 6 1.9520 -5.4958 0.6781 19 7 1.3389 -5.0373 1.7487 20 14 2.5089 -7.2776 0.6117 21 1 3.8437 -7.4032 1.2503 22 1 1.5314 -8.1290 1.3362 23 1 2.5943 -7.7171 -0.8042 24 6 1.5069 -2.3990 0.7764 25 1 -0.3634 0.0001 1.0275 26 1 -0.3633 0.8899 -0.5140 27 1 -0.3634 -0.8900 -0.5138 28 1 0.0852 4.7216 2.1314 29 1 -0.5270 5.7805 -0.0020 30 1 0.0870 4.7209 -2.1345 31 1 3.2576 -1.1541 0.2270 32 1 2.7146 -2.1822 -1.9423 33 1 0.9323 -1.9791 -1.6651 34 1 1.1765 -5.6246 2.5034 35 1 0.4266 -2.2757 0.8530 36 1 1.9760 -2.6166 1.7358 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044225232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:43 Heat of formation + Delta-G solvation = 49.999985 kcal Electronic energy + Delta-G solvation = -23315.130595 eV Core-core repulsion = 19660.648590 eV Total energy + Delta-G solvation = -3654.482005 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.51493 -39.04804 -37.58199 -37.00059 -36.50226 -34.51265 -32.18186 -31.38245 -31.05894 -27.77230 -26.72787 -24.71520 -24.62128 -23.15439 -22.81441 -20.35550 -18.71637 -17.84230 -17.07127 -16.70258 -16.51767 -16.24722 -15.18315 -14.82981 -14.72340 -14.55931 -14.21464 -13.84838 -13.73917 -12.92388 -12.72028 -12.60380 -12.42407 -12.14884 -12.08384 -11.92657 -11.54477 -11.38837 -11.31965 -11.27224 -11.15329 -10.97667 -10.78684 -10.23938 -10.12687 -9.75659 -9.46851 -9.24768 -9.10831 -8.80842 -8.15768 -6.93940 -5.82888 -3.14105 0.50498 0.58722 1.55016 1.97256 2.62034 2.92372 3.18378 3.39103 3.43909 3.45660 4.22903 4.37434 4.46557 4.61329 4.71805 4.94440 4.99508 5.24445 5.31825 5.38796 5.50089 5.55761 5.57476 5.74006 5.74763 5.86552 6.04176 6.07484 6.13714 6.45054 6.56680 6.72834 7.11587 7.27230 7.45568 7.64065 7.91596 8.27236 8.98940 9.65331 10.57658 11.35944 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.003554 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.486005 B = 7876.711708 C = 8756.009393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.579 5.579 3 C 0.561 3.439 4 O -0.521 6.521 5 C -0.097 4.097 6 C -0.001 4.001 7 Cl -0.037 7.037 8 C -0.108 4.108 9 C -0.085 4.085 10 C -0.108 4.108 11 C -0.003 4.003 12 Cl -0.040 7.040 13 C 0.086 3.914 14 C 0.107 3.893 15 N -0.602 5.602 16 C -0.219 4.219 17 H 0.084 0.916 18 C -0.005 4.005 19 N -0.917 5.917 20 Si 0.915 3.085 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.158 3.842 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.120 0.880 32 H 0.044 0.956 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.036 0.964 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 22.780 -3.103 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.310 5.310 3 C 0.345 3.655 4 O -0.397 6.397 5 C -0.102 4.102 6 C -0.029 4.029 7 Cl -0.008 7.008 8 C -0.126 4.126 9 C -0.104 4.104 10 C -0.127 4.127 11 C -0.030 4.030 12 Cl -0.010 7.010 13 C -0.017 4.017 14 C -0.020 4.020 15 N -0.328 5.328 16 C -0.347 4.347 17 H 0.102 0.898 18 C -0.202 4.202 19 N -0.564 5.564 20 Si 0.745 3.255 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.031 3.969 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.163 0.837 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.138 0.862 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.639 22.218 -2.993 23.117 hybrid contribution 0.029 -1.068 0.025 1.069 sum -5.610 21.150 -2.968 22.082 Atomic orbital electron populations 1.21807 0.79664 1.02980 1.02202 1.47784 1.06941 1.05558 1.70744 1.17866 0.87205 0.83028 0.77354 1.90812 1.12674 1.86728 1.49505 1.19838 1.01069 0.97846 0.91459 1.20865 0.99809 0.95170 0.87037 1.98441 1.91677 1.81406 1.29238 1.21141 0.98063 0.93531 0.99903 1.21198 0.98467 0.99936 0.90789 1.21127 0.98122 0.93569 0.99895 1.20842 1.00012 0.95273 0.86908 1.98432 1.91530 1.81626 1.29433 1.23798 0.97918 0.79551 1.00435 1.22803 0.98247 0.87214 0.93749 1.45332 1.78965 1.03035 1.05427 1.18926 1.36246 0.80168 0.99319 0.89846 1.24844 1.00191 0.98272 0.96904 1.69858 1.44927 1.35376 1.06194 0.86063 0.78009 0.83976 0.77477 1.21428 1.21666 1.20485 1.22326 0.96410 0.83831 0.94333 0.92140 0.92073 0.89783 0.83707 0.83701 0.83739 0.86204 0.93787 0.94814 0.93535 0.94624 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 8.94 59.85 0.54 1.60 16 2 N -0.58 -9.81 3.12 -174.88 -0.54 -10.35 16 3 C 0.56 9.56 5.22 -12.40 -0.06 9.49 16 4 O -0.52 -10.72 16.61 5.30 0.09 -10.63 16 5 C -0.10 -1.32 3.92 -104.91 -0.41 -1.73 16 6 C 0.00 -0.01 6.35 -39.07 -0.25 -0.26 16 7 Cl -0.04 -0.48 28.04 -51.86 -1.45 -1.93 16 8 C -0.11 -0.87 9.82 -39.60 -0.39 -1.26 16 9 C -0.09 -0.55 10.04 -39.51 -0.40 -0.95 16 10 C -0.11 -0.86 9.82 -39.60 -0.39 -1.25 16 11 C 0.00 -0.03 5.92 -39.07 -0.23 -0.26 16 12 Cl -0.04 -0.49 28.04 -51.86 -1.45 -1.94 16 13 C 0.09 1.75 4.55 -67.81 -0.31 1.44 16 14 C 0.11 2.28 8.24 -8.52 -0.07 2.21 16 15 N -0.60 -15.62 3.76 -184.80 -0.70 -16.32 16 16 C -0.22 -6.19 10.73 -15.06 -0.16 -6.36 16 17 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 18 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 19 N -0.92 -27.21 11.86 55.49 0.66 -26.55 16 20 Si 0.91 22.17 29.56 -169.99 -5.02 17.15 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.16 3.71 6.63 -8.51 -0.06 3.65 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.72 6.55 -51.93 -0.34 0.38 16 27 H 0.08 1.22 6.19 -51.93 -0.32 0.90 16 28 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 29 H 0.15 0.45 8.06 -52.49 -0.42 0.02 16 30 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 31 H 0.12 2.63 7.28 -51.93 -0.38 2.25 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.03 0.68 6.97 -51.93 -0.36 0.32 16 34 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.04 0.83 6.59 -51.93 -0.34 0.49 16 36 H 0.06 1.66 7.63 -51.93 -0.40 1.27 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -33.24 335.81 -9.45 -42.69 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -3.80 Total: -3.27 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -2.29 Total: 6.10 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.58 Total: -53.22 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -2.91 Total: -3.87 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.24 -9.45 -42.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044225232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.692 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds