Wall clock time and date at job start Tue Mar 31 2020 15:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 120.00079 * 2 1 4 4 O 1.21570 * 119.99809 * 179.97438 * 3 2 1 5 5 C 1.47696 * 119.99700 * 359.97438 * 3 2 1 6 6 C 1.39745 * 120.16347 * 89.72823 * 5 3 2 7 7 Cl 1.73593 * 120.08619 * 0.02562 * 6 5 3 8 8 C 1.38100 * 119.82490 * 179.76329 * 6 5 3 9 9 C 1.38333 * 120.16688 * 0.53404 * 8 6 5 10 10 C 1.38334 * 120.33846 * 359.70089 * 9 8 6 11 11 C 1.38091 * 120.17130 * 0.03760 * 10 9 8 12 12 Cl 1.73601 * 120.08675 * 180.02562 * 11 10 9 13 13 C 1.46502 * 120.00143 * 179.97438 * 2 1 3 14 14 C 1.53493 * 114.20505 * 60.00335 * 13 2 1 15 15 N 1.47058 * 87.98843 * 220.15099 * 14 13 2 16 16 C 1.36939 * 136.05576 * 206.86742 * 15 14 13 17 17 H 1.07999 * 120.00262 * 6.89608 * 16 15 14 18 18 C 1.38820 * 119.99870 * 186.90334 * 16 15 14 19 19 N 1.31623 * 119.99962 * 7.45800 * 18 16 15 20 20 Si 1.86800 * 119.99890 * 187.46108 * 18 16 15 21 21 H 1.48508 * 109.46943 * 94.79809 * 20 18 16 22 22 H 1.48498 * 109.46995 * 214.79830 * 20 18 16 23 23 H 1.48493 * 109.47191 * 334.80093 * 20 18 16 24 24 C 1.47065 * 87.88764 * 27.11926 * 15 14 13 25 25 H 1.08991 * 109.47757 * 270.00830 * 1 2 3 26 26 H 1.09002 * 109.46632 * 30.00968 * 1 2 3 27 27 H 1.09003 * 109.47195 * 150.00511 * 1 2 3 28 28 H 1.07999 * 119.91363 * 180.27144 * 8 6 5 29 29 H 1.07995 * 119.82960 * 179.71917 * 9 8 6 30 30 H 1.08004 * 119.90836 * 180.02562 * 10 9 8 31 31 H 1.08997 * 113.28423 * 193.07256 * 13 2 1 32 32 H 1.09000 * 113.46649 * 105.36252 * 14 13 2 33 33 H 1.09005 * 113.52085 * 334.94037 * 14 13 2 34 34 H 0.96998 * 119.99720 * 180.02562 * 19 18 16 35 35 H 1.09003 * 113.46183 * 87.65927 * 24 15 14 36 36 H 1.08992 * 113.47023 * 218.10216 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3546 1.1672 0.0005 5 6 1.4004 2.4463 -0.0006 6 6 1.0438 3.0518 1.2074 7 17 1.4684 2.3029 2.7148 8 6 0.3576 4.2502 1.1987 9 6 0.0136 4.8456 -0.0016 10 6 0.3588 4.2497 -1.2014 11 6 1.0497 3.0541 -1.2090 12 17 1.4824 2.3086 -2.7159 13 6 2.1975 -1.2687 0.0006 14 6 1.9061 -2.1643 -1.2115 15 7 1.9168 -3.3163 -0.2975 16 6 2.1849 -4.6551 -0.4018 17 1 2.5773 -5.0571 -1.3242 18 6 1.9520 -5.4958 0.6781 19 7 1.3389 -5.0373 1.7487 20 14 2.5089 -7.2776 0.6117 21 1 3.8437 -7.4032 1.2503 22 1 1.5314 -8.1290 1.3362 23 1 2.5943 -7.7171 -0.8042 24 6 1.5069 -2.3990 0.7764 25 1 -0.3634 0.0001 1.0275 26 1 -0.3633 0.8899 -0.5140 27 1 -0.3634 -0.8900 -0.5138 28 1 0.0852 4.7216 2.1314 29 1 -0.5270 5.7805 -0.0020 30 1 0.0870 4.7209 -2.1345 31 1 3.2576 -1.1541 0.2270 32 1 2.7146 -2.1822 -1.9423 33 1 0.9323 -1.9791 -1.6651 34 1 1.1765 -5.6246 2.5034 35 1 0.4266 -2.2757 0.8530 36 1 1.9760 -2.6166 1.7358 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044225232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:42 Heat of formation + Delta-G solvation = 29.454338 kcal Electronic energy + Delta-G solvation = -23316.021521 eV Core-core repulsion = 19660.648590 eV Total energy + Delta-G solvation = -3655.372931 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.71742 -40.28996 -39.07565 -37.88234 -37.36514 -36.03347 -34.14193 -32.36993 -31.77652 -29.67417 -28.05458 -26.48961 -26.03900 -24.29962 -23.88900 -21.75366 -20.28328 -19.03525 -18.70061 -18.04322 -17.56904 -17.42016 -16.89024 -16.03017 -15.98117 -15.69019 -15.50230 -15.19703 -14.81693 -14.55765 -14.00532 -13.84242 -13.45819 -13.44988 -13.36699 -13.20523 -13.15056 -12.92507 -12.75724 -12.69596 -12.23273 -12.18930 -12.12537 -12.07126 -12.00615 -11.43611 -11.12659 -10.90098 -10.08048 -9.86642 -9.66303 -9.01728 -7.98535 -5.31648 -0.27627 -0.12134 0.70565 1.13227 1.32460 1.44507 1.47530 1.56100 1.79565 2.31387 2.46044 3.17127 3.26317 3.45882 3.68592 3.72167 3.89378 4.09915 4.11279 4.21712 4.25784 4.27526 4.41339 4.54394 4.66732 4.78116 4.83420 4.87827 5.00996 5.08627 5.12773 5.13072 5.38367 5.50120 5.58006 5.82039 6.26030 6.83413 6.92761 7.51972 8.50751 9.20621 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.003554 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.486005 B = 7876.711708 C = 8756.009393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.580 5.580 3 C 0.564 3.436 4 O -0.566 6.566 5 C -0.126 4.126 6 C -0.015 4.015 7 Cl -0.061 7.061 8 C -0.098 4.098 9 C -0.060 4.060 10 C -0.097 4.097 11 C -0.015 4.015 12 Cl -0.057 7.057 13 C 0.112 3.888 14 C 0.115 3.885 15 N -0.632 5.632 16 C -0.235 4.235 17 H 0.088 0.912 18 C -0.061 4.061 19 N -0.950 5.950 20 Si 0.984 3.016 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.265 1.265 24 C 0.165 3.835 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.173 0.827 29 H 0.194 0.806 30 H 0.175 0.825 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.251 0.749 35 H 0.041 0.959 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.121 25.374 -4.103 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.310 5.310 3 C 0.352 3.648 4 O -0.446 6.446 5 C -0.130 4.130 6 C -0.043 4.043 7 Cl -0.032 7.032 8 C -0.116 4.116 9 C -0.078 4.078 10 C -0.115 4.115 11 C -0.043 4.043 12 Cl -0.028 7.028 13 C 0.007 3.993 14 C -0.011 4.011 15 N -0.359 5.359 16 C -0.362 4.362 17 H 0.106 0.894 18 C -0.255 4.255 19 N -0.598 5.598 20 Si 0.811 3.189 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.189 1.189 24 C 0.038 3.962 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.191 0.809 29 H 0.211 0.789 30 H 0.193 0.807 31 H 0.116 0.884 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.401 24.850 -4.021 26.238 hybrid contribution 0.514 -1.689 0.312 1.793 sum -6.887 23.161 -3.708 24.446 Atomic orbital electron populations 1.21935 0.77613 1.03971 1.02930 1.47731 1.08056 1.04501 1.70740 1.18401 0.86814 0.84048 0.75576 1.90774 1.14886 1.87571 1.51333 1.19548 1.03512 0.96694 0.93267 1.21057 1.01295 0.96523 0.85414 1.98433 1.92079 1.82108 1.30607 1.21558 0.96236 0.91782 1.02068 1.21774 0.96315 1.00612 0.89093 1.21564 0.96151 0.91791 1.02022 1.21026 1.01284 0.96551 0.85406 1.98425 1.91869 1.82211 1.30310 1.23071 0.96729 0.80748 0.98734 1.22853 0.99201 0.85485 0.93611 1.45615 1.79360 1.03364 1.07515 1.19316 1.35848 0.81502 0.99574 0.89434 1.25707 1.00643 1.02528 0.96602 1.70026 1.46345 1.36661 1.06770 0.84995 0.77084 0.78814 0.78021 1.21479 1.21724 1.18914 1.22204 0.96433 0.84876 0.92645 0.91579 0.89409 0.90327 0.80939 0.78881 0.80717 0.88356 0.93468 0.92759 0.93998 0.94179 0.95493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.11 8.94 127.77 1.14 3.26 16 2 N -0.58 -19.93 3.12 -825.47 -2.57 -22.50 16 3 C 0.56 19.50 5.22 86.74 0.45 19.95 16 4 O -0.57 -24.23 16.61 -3.93 -0.07 -24.29 16 5 C -0.13 -3.25 3.92 -20.05 -0.08 -3.33 16 6 C -0.02 -0.33 6.35 22.60 0.14 -0.19 16 7 Cl -0.06 -1.58 28.04 -2.72 -0.08 -1.65 16 8 C -0.10 -1.18 9.82 22.26 0.22 -0.96 16 9 C -0.06 -0.43 10.04 22.32 0.22 -0.21 16 10 C -0.10 -1.10 9.82 22.26 0.22 -0.88 16 11 C -0.02 -0.31 5.92 22.60 0.13 -0.18 16 12 Cl -0.06 -1.35 28.04 -2.72 -0.08 -1.42 16 13 C 0.11 4.71 4.55 45.46 0.21 4.92 16 14 C 0.11 4.95 8.24 83.18 0.69 5.64 16 15 N -0.63 -33.68 3.76 -738.58 -2.78 -36.46 16 16 C -0.23 -13.49 10.73 84.04 0.90 -12.58 16 17 H 0.09 4.80 7.84 -2.91 -0.02 4.78 16 18 C -0.06 -3.53 5.49 84.86 0.47 -3.06 16 19 N -0.95 -57.99 11.86 21.65 0.26 -57.74 16 20 Si 0.98 46.23 29.56 68.60 2.03 48.25 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 24 C 0.17 8.09 6.63 83.18 0.55 8.64 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.09 1.93 6.55 -2.39 -0.02 1.92 16 27 H 0.08 2.23 6.19 -2.39 -0.01 2.22 16 28 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 29 H 0.19 -0.33 8.06 -2.91 -0.02 -0.36 16 30 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 31 H 0.10 4.58 7.28 -2.39 -0.02 4.57 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.05 2.16 6.97 -2.38 -0.02 2.14 16 34 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 35 H 0.04 1.92 6.59 -2.39 -0.02 1.91 16 36 H 0.03 1.49 7.63 -2.39 -0.02 1.47 16 Total: -1.00 -76.07 335.81 3.10 -72.97 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: 1.12 Total: 1.83 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 5.27 Total: 21.00 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -5.10 Total: -116.69 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.07 Total: -24.29 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 17 Polarization: -2.92 SS G_CDS: -0.15 Total: -3.08 kcal Total: -76.07 3.10 -72.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044225232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.427 kcal (2) G-P(sol) polarization free energy of solvation -76.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds