Wall clock time and date at job start Tue Mar 31 2020 15:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46897 * 109.47259 * 2 1 4 4 C 1.46895 * 111.00199 * 289.42761 * 3 2 1 5 5 C 1.50698 * 109.47047 * 160.32912 * 4 3 2 6 6 H 1.08005 * 120.00268 * 4.63589 * 5 4 3 7 7 C 1.37877 * 120.00119 * 184.64045 * 5 4 3 8 8 N 1.31517 * 119.99828 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00147 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47129 * 89.99785 * 9 7 5 11 11 H 1.48505 * 109.47014 * 210.00229 * 9 7 5 12 12 H 1.48505 * 109.46973 * 330.00139 * 9 7 5 13 13 C 1.46912 * 110.99641 * 165.47748 * 3 2 1 14 14 C 1.50696 * 109.47284 * 293.95078 * 13 3 2 15 15 N 1.31839 * 119.65332 * 269.98410 * 14 13 3 16 16 C 1.31834 * 121.79338 * 180.02562 * 15 14 13 17 17 C 1.38359 * 120.87198 * 359.97438 * 16 15 14 18 18 Br 1.89094 * 120.40038 * 180.02562 * 17 16 15 19 19 C 1.38618 * 119.20005 * 359.74873 * 17 16 15 20 20 C 1.38719 * 119.64400 * 90.00213 * 14 13 3 21 21 O 1.35913 * 120.46624 * 359.95518 * 20 14 13 22 22 C 1.42904 * 116.99888 * 179.97438 * 21 20 14 23 23 H 1.08999 * 109.47732 * 179.78594 * 1 2 3 24 24 H 1.09008 * 109.47101 * 299.79028 * 1 2 3 25 25 H 1.09003 * 109.47116 * 59.78339 * 1 2 3 26 26 H 1.09002 * 109.46970 * 239.99600 * 2 1 3 27 27 H 1.09003 * 109.47029 * 120.00359 * 2 1 3 28 28 H 1.08999 * 109.47656 * 280.33262 * 4 3 2 29 29 H 1.09004 * 109.46974 * 40.33546 * 4 3 2 30 30 H 0.96995 * 119.99505 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.46652 * 173.95476 * 13 3 2 32 32 H 1.08999 * 109.47320 * 53.95506 * 13 3 2 33 33 H 1.07997 * 119.56791 * 179.97438 * 16 15 14 34 34 H 1.07999 * 120.81771 * 180.25183 * 19 17 16 35 35 H 1.09000 * 109.47028 * 179.97438 * 22 21 20 36 36 H 1.08993 * 109.47359 * 300.00331 * 22 21 20 37 37 H 1.09005 * 109.46800 * 60.00055 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7651 2.0334 -1.2933 5 6 1.8195 3.5298 -1.1242 6 1 2.0964 3.9560 -0.1712 7 6 1.5158 4.3551 -2.1862 8 7 1.1782 3.8362 -3.3466 9 14 1.5840 6.2101 -1.9769 10 1 2.9470 6.6961 -2.3103 11 1 0.5956 6.8472 -2.8838 12 1 1.2636 6.5616 -0.5701 13 6 3.4469 1.4386 0.3439 14 6 3.6371 0.9912 1.7703 15 7 3.5932 1.8791 2.7438 16 6 3.7546 1.5345 4.0061 17 6 3.9775 0.2153 4.3589 18 35 4.2064 -0.2642 6.1737 19 6 4.0253 -0.7513 3.3666 20 6 3.8568 -0.3507 2.0449 21 8 3.9006 -1.2621 1.0376 22 6 4.1320 -2.6238 1.4044 23 1 -0.3634 -1.0276 -0.0038 24 1 -0.3634 0.5106 0.8919 25 1 -0.3633 0.5172 -0.8881 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.5229 1.7211 -2.0118 29 1 0.7788 1.7445 -1.6567 30 1 0.9642 4.4168 -4.0935 31 1 3.8092 2.4605 0.2324 32 1 4.0059 0.7803 -0.3210 33 1 3.7122 2.2918 4.7749 34 1 4.1937 -1.7893 3.6129 35 1 4.1427 -3.2445 0.5084 36 1 5.0918 -2.7047 1.9144 37 1 3.3373 -2.9608 2.0700 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139085097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:15 Heat of formation + Delta-G solvation = 9.217832 kcal Electronic energy + Delta-G solvation = -20436.227660 eV Core-core repulsion = 17260.673452 eV Total energy + Delta-G solvation = -3175.554208 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90343 -38.25021 -36.84563 -33.35832 -32.52261 -31.29480 -30.62390 -29.53850 -27.66236 -26.98203 -24.91636 -23.12277 -22.47706 -21.95865 -19.69272 -18.03981 -17.34239 -16.55423 -16.26368 -16.01841 -14.79708 -14.58518 -14.43716 -14.08332 -13.79602 -13.70315 -13.44695 -13.14650 -12.55472 -12.11630 -11.87570 -11.69835 -11.65577 -11.28690 -11.16002 -11.09341 -10.81102 -10.73687 -10.59546 -10.50699 -10.19629 -9.71595 -9.50535 -9.41741 -9.14519 -8.38199 -8.32397 -7.19930 -5.94497 -3.94558 0.81414 1.13976 1.33173 3.02865 3.38790 3.44609 3.50929 3.61014 4.42990 4.47884 4.51647 4.61346 4.75366 4.92696 4.93598 5.10733 5.22752 5.36148 5.41785 5.64705 5.72979 5.78215 5.96498 6.12383 6.18994 6.26936 6.40050 6.56564 6.66051 6.86784 7.04671 7.27905 7.38931 7.91548 7.99803 8.17753 8.24370 8.61518 9.14294 9.69292 11.16174 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017629 B = 0.003576 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.896189 B = 7828.730780 C = 8850.674942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 N -0.524 5.524 4 C 0.192 3.808 5 C -0.501 4.501 6 H 0.066 0.934 7 C 0.054 3.946 8 N -0.902 5.902 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.272 1.272 13 C 0.112 3.888 14 C 0.152 3.848 15 N -0.417 5.417 16 C 0.096 3.904 17 C -0.119 4.119 18 Br -0.043 7.043 19 C -0.142 4.142 20 C 0.085 3.915 21 O -0.296 6.296 22 C 0.022 3.978 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.024 0.976 27 H 0.058 0.942 28 H -0.010 1.010 29 H 0.040 0.960 30 H 0.260 0.740 31 H 0.103 0.897 32 H 0.046 0.954 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.427 -14.427 17.129 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 N -0.250 5.250 4 C 0.067 3.933 5 C -0.540 4.540 6 H 0.084 0.916 7 C -0.146 4.146 8 N -0.542 5.542 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.197 1.197 13 C -0.017 4.017 14 C 0.010 3.990 15 N -0.126 5.126 16 C -0.062 4.062 17 C -0.200 4.200 18 Br 0.041 6.959 19 C -0.170 4.170 20 C 0.036 3.964 21 O -0.207 6.207 22 C -0.073 4.073 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.008 0.992 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.064 0.936 33 H 0.182 0.818 34 H 0.163 0.837 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.021 -13.398 17.543 23.163 hybrid contribution 0.559 -0.530 -0.476 0.905 sum 7.580 -13.928 17.067 23.296 Atomic orbital electron populations 1.21764 0.95773 0.99738 1.02881 1.22078 0.95546 0.90755 0.99357 1.62182 1.12754 1.14106 1.35947 1.19812 0.96564 0.94189 0.82693 1.21225 1.45056 0.90566 0.97141 0.91590 1.24970 0.95559 0.98887 0.95206 1.69961 1.47414 1.35091 1.01743 0.86525 0.77604 0.85415 0.78061 1.20813 1.21436 1.19702 1.20842 0.91591 1.02703 0.86533 1.21322 0.94459 0.85751 0.97424 1.67846 1.09873 1.35692 0.99183 1.22800 0.96645 0.92812 0.93959 1.22711 1.09030 0.96866 0.91438 1.96700 1.96321 1.93041 1.09819 1.21528 1.03961 1.00316 0.91187 1.19933 0.98407 0.91092 0.86988 1.86278 1.86342 1.17005 1.31109 1.23133 1.00600 0.80518 1.03058 0.93841 0.92644 0.91887 0.95786 0.92368 0.99215 0.94240 0.93072 0.87905 0.93571 0.81844 0.83723 0.87760 0.92667 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.96 37.15 0.37 -2.21 16 2 C 0.05 0.96 4.94 -3.83 -0.02 0.95 16 3 N -0.52 -11.57 4.38 -237.52 -1.04 -12.61 16 4 C 0.19 5.01 4.60 -4.98 -0.02 4.99 16 5 C -0.50 -14.22 8.61 -34.44 -0.30 -14.52 16 6 H 0.07 1.89 7.66 -52.48 -0.40 1.49 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 9 Si 0.90 22.04 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.11 2.24 4.94 -4.97 -0.02 2.22 16 14 C 0.15 2.65 5.85 -82.41 -0.48 2.16 16 15 N -0.42 -7.27 10.27 -9.33 -0.10 -7.36 16 16 C 0.10 1.35 10.94 -17.51 -0.19 1.16 16 17 C -0.12 -1.47 6.24 -39.40 -0.25 -1.72 16 18 Br -0.04 -0.43 33.73 -68.01 -2.29 -2.73 16 19 C -0.14 -1.72 8.90 -39.11 -0.35 -2.07 16 20 C 0.09 1.23 5.41 -39.07 -0.21 1.02 16 21 O -0.30 -3.95 7.72 -19.47 -0.15 -4.10 16 22 C 0.02 0.19 9.83 101.05 0.99 1.18 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 25 H 0.06 1.25 6.46 -51.93 -0.34 0.91 16 26 H 0.02 0.46 8.07 -51.93 -0.42 0.04 16 27 H 0.06 1.01 4.62 -51.93 -0.24 0.77 16 28 H -0.01 -0.27 8.00 -51.93 -0.42 -0.69 16 29 H 0.04 1.09 6.15 -51.93 -0.32 0.77 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.10 2.24 7.32 -51.93 -0.38 1.86 16 32 H 0.05 0.89 7.50 -51.93 -0.39 0.50 16 33 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.15 1.35 6.45 -52.49 -0.34 1.01 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.39 7.71 -51.93 -0.40 -0.02 16 37 H 0.06 0.41 7.68 -51.93 -0.40 0.02 16 LS Contribution 324.35 15.07 4.89 4.89 Total: -1.00 -31.07 324.35 -8.42 -39.49 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -4.86 Total: -3.03 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -0.58 Total: -5.38 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.40 Total: -46.15 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.15 Total: -4.10 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.29 Total: -2.73 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.07 -8.42 -39.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139085097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.703 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds