Wall clock time and date at job start Tue Mar 31 2020 15:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46897 * 109.47259 * 2 1 4 4 C 1.46895 * 111.00199 * 289.42761 * 3 2 1 5 5 C 1.50698 * 109.47047 * 160.32912 * 4 3 2 6 6 H 1.08005 * 120.00268 * 4.63589 * 5 4 3 7 7 C 1.37877 * 120.00119 * 184.64045 * 5 4 3 8 8 N 1.31517 * 119.99828 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00147 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47129 * 89.99785 * 9 7 5 11 11 H 1.48505 * 109.47014 * 210.00229 * 9 7 5 12 12 H 1.48505 * 109.46973 * 330.00139 * 9 7 5 13 13 C 1.46912 * 110.99641 * 165.47748 * 3 2 1 14 14 C 1.50696 * 109.47284 * 293.95078 * 13 3 2 15 15 N 1.31839 * 119.65332 * 269.98410 * 14 13 3 16 16 C 1.31834 * 121.79338 * 180.02562 * 15 14 13 17 17 C 1.38359 * 120.87198 * 359.97438 * 16 15 14 18 18 Br 1.89094 * 120.40038 * 180.02562 * 17 16 15 19 19 C 1.38618 * 119.20005 * 359.74873 * 17 16 15 20 20 C 1.38719 * 119.64400 * 90.00213 * 14 13 3 21 21 O 1.35913 * 120.46624 * 359.95518 * 20 14 13 22 22 C 1.42904 * 116.99888 * 179.97438 * 21 20 14 23 23 H 1.08999 * 109.47732 * 179.78594 * 1 2 3 24 24 H 1.09008 * 109.47101 * 299.79028 * 1 2 3 25 25 H 1.09003 * 109.47116 * 59.78339 * 1 2 3 26 26 H 1.09002 * 109.46970 * 239.99600 * 2 1 3 27 27 H 1.09003 * 109.47029 * 120.00359 * 2 1 3 28 28 H 1.08999 * 109.47656 * 280.33262 * 4 3 2 29 29 H 1.09004 * 109.46974 * 40.33546 * 4 3 2 30 30 H 0.96995 * 119.99505 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.46652 * 173.95476 * 13 3 2 32 32 H 1.08999 * 109.47320 * 53.95506 * 13 3 2 33 33 H 1.07997 * 119.56791 * 179.97438 * 16 15 14 34 34 H 1.07999 * 120.81771 * 180.25183 * 19 17 16 35 35 H 1.09000 * 109.47028 * 179.97438 * 22 21 20 36 36 H 1.08993 * 109.47359 * 300.00331 * 22 21 20 37 37 H 1.09005 * 109.46800 * 60.00055 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7651 2.0334 -1.2933 5 6 1.8195 3.5298 -1.1242 6 1 2.0964 3.9560 -0.1712 7 6 1.5158 4.3551 -2.1862 8 7 1.1782 3.8362 -3.3466 9 14 1.5840 6.2101 -1.9769 10 1 2.9470 6.6961 -2.3103 11 1 0.5956 6.8472 -2.8838 12 1 1.2636 6.5616 -0.5701 13 6 3.4469 1.4386 0.3439 14 6 3.6371 0.9912 1.7703 15 7 3.5932 1.8791 2.7438 16 6 3.7546 1.5345 4.0061 17 6 3.9775 0.2153 4.3589 18 35 4.2064 -0.2642 6.1737 19 6 4.0253 -0.7513 3.3666 20 6 3.8568 -0.3507 2.0449 21 8 3.9006 -1.2621 1.0376 22 6 4.1320 -2.6238 1.4044 23 1 -0.3634 -1.0276 -0.0038 24 1 -0.3634 0.5106 0.8919 25 1 -0.3633 0.5172 -0.8881 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.5229 1.7211 -2.0118 29 1 0.7788 1.7445 -1.6567 30 1 0.9642 4.4168 -4.0935 31 1 3.8092 2.4605 0.2324 32 1 4.0059 0.7803 -0.3210 33 1 3.7122 2.2918 4.7749 34 1 4.1937 -1.7893 3.6129 35 1 4.1427 -3.2445 0.5084 36 1 5.0918 -2.7047 1.9144 37 1 3.3373 -2.9608 2.0700 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139085097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:15 Heat of formation + Delta-G solvation = -11.462316 kcal Electronic energy + Delta-G solvation = -20437.124418 eV Core-core repulsion = 17260.673452 eV Total energy + Delta-G solvation = -3176.450966 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.99774 -39.25130 -38.51979 -34.84234 -34.31319 -32.46980 -31.83108 -30.98222 -28.86799 -28.34944 -26.51361 -24.48901 -24.03855 -23.22603 -21.36774 -19.01388 -18.61230 -18.36530 -17.46463 -17.27255 -16.63193 -15.98166 -15.61762 -15.43594 -15.26056 -14.88179 -14.74844 -14.46468 -14.15577 -13.63819 -13.33249 -13.11154 -12.89924 -12.67221 -12.60452 -12.47244 -12.38898 -12.34147 -12.15222 -12.07109 -11.53023 -11.44076 -11.25662 -10.62663 -10.54489 -10.46587 -9.46011 -8.98293 -8.15611 -6.24209 -0.29066 0.09899 0.36596 1.42343 1.43461 1.55926 2.13169 2.41705 2.47528 3.14684 3.22513 3.40288 3.54330 3.65629 3.81262 4.12524 4.21933 4.28173 4.37485 4.40474 4.52984 4.59533 4.69775 4.75407 4.78194 4.83719 4.96065 5.03894 5.20387 5.27233 5.29738 5.36326 5.71636 6.10266 6.13484 6.37081 6.64855 6.87594 6.90707 7.44465 8.94809 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017629 B = 0.003576 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.896189 B = 7828.730780 C = 8850.674942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.054 3.946 3 N -0.534 5.534 4 C 0.209 3.791 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.964 3.036 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.269 1.269 13 C 0.120 3.880 14 C 0.118 3.882 15 N -0.452 5.452 16 C 0.087 3.913 17 C -0.111 4.111 18 Br -0.011 7.011 19 C -0.129 4.129 20 C 0.091 3.909 21 O -0.317 6.317 22 C 0.010 3.990 23 H 0.079 0.921 24 H 0.050 0.950 25 H 0.035 0.965 26 H 0.020 0.980 27 H 0.079 0.921 28 H -0.037 1.037 29 H 0.018 0.982 30 H 0.264 0.736 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.182 0.818 34 H 0.180 0.820 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.874 -15.834 19.441 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 N -0.259 5.259 4 C 0.083 3.917 5 C -0.556 4.556 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.575 5.575 9 Si 0.789 3.211 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.194 1.194 13 C -0.008 4.008 14 C -0.022 4.022 15 N -0.162 5.162 16 C -0.072 4.072 17 C -0.193 4.193 18 Br 0.073 6.927 19 C -0.157 4.157 20 C 0.041 3.959 21 O -0.229 6.229 22 C -0.084 4.084 23 H 0.098 0.902 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.097 0.903 28 H -0.020 1.020 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.199 0.801 34 H 0.197 0.803 35 H 0.138 0.862 36 H 0.092 0.908 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.477 -14.831 19.863 25.893 hybrid contribution 0.476 -0.235 -1.063 1.188 sum 7.953 -15.066 18.800 25.371 Atomic orbital electron populations 1.21729 0.94987 1.01620 1.01246 1.22136 0.96126 0.89003 1.00099 1.62091 1.14578 1.16092 1.33143 1.19431 0.94411 0.93695 0.84173 1.21456 1.45224 0.91975 0.96902 0.92539 1.25818 0.94948 1.03784 0.94762 1.70074 1.48018 1.36890 1.02496 0.85460 0.78042 0.79466 0.78122 1.19848 1.20562 1.19354 1.20590 0.90065 1.00940 0.89222 1.20775 0.98169 0.87478 0.95762 1.67667 1.10964 1.36970 1.00562 1.23098 0.96760 0.94305 0.93074 1.22882 1.06906 0.96326 0.93199 1.96745 1.96077 1.92673 1.07169 1.21852 1.02160 1.01835 0.89839 1.19755 0.97752 0.90174 0.88189 1.86254 1.86182 1.18939 1.31554 1.23511 1.02170 0.78051 1.04633 0.90180 0.93123 0.94544 0.96143 0.90262 1.01957 0.96357 0.92755 0.91058 0.93728 0.80081 0.80327 0.86199 0.90812 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.96 71.98 0.72 -4.23 16 2 C 0.05 2.07 4.94 86.30 0.43 2.49 16 3 N -0.53 -24.58 4.38 -905.38 -3.97 -28.54 16 4 C 0.21 11.51 4.60 85.56 0.39 11.91 16 5 C -0.52 -30.60 8.61 25.60 0.22 -30.38 16 6 H 0.06 3.38 7.66 -2.91 -0.02 3.36 16 7 C 0.00 0.27 5.46 84.65 0.46 0.73 16 8 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 9 Si 0.96 46.03 29.54 68.60 2.03 48.06 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.12 5.08 4.94 85.55 0.42 5.50 16 14 C 0.12 4.17 5.85 42.67 0.25 4.42 16 15 N -0.45 -15.93 10.27 -183.43 -1.88 -17.82 16 16 C 0.09 2.33 10.94 84.72 0.93 3.26 16 17 C -0.11 -2.47 6.24 22.39 0.14 -2.33 16 18 Br -0.01 -0.19 33.73 -20.37 -0.69 -0.88 16 19 C -0.13 -2.74 8.90 22.57 0.20 -2.54 16 20 C 0.09 2.51 5.41 22.60 0.12 2.63 16 21 O -0.32 -7.96 7.72 -92.57 -0.71 -8.67 16 22 C 0.01 0.14 9.83 113.37 1.11 1.26 16 23 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.04 1.48 6.46 -2.39 -0.02 1.46 16 26 H 0.02 0.79 8.07 -2.39 -0.02 0.77 16 27 H 0.08 2.70 4.62 -2.39 -0.01 2.68 16 28 H -0.04 -2.20 8.00 -2.39 -0.02 -2.22 16 29 H 0.02 1.08 6.15 -2.38 -0.01 1.06 16 30 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.07 3.36 7.32 -2.39 -0.02 3.35 16 32 H 0.04 1.83 7.50 -2.39 -0.02 1.82 16 33 H 0.18 3.98 8.06 -2.91 -0.02 3.95 16 34 H 0.18 2.50 6.45 -2.91 -0.02 2.48 16 35 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 0.75 7.71 -2.39 -0.02 0.73 16 37 H 0.07 0.77 7.68 -2.38 -0.02 0.75 16 Total: -1.00 -69.72 324.35 1.53 -68.19 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 1.08 Total: 3.88 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.40 Total: -7.28 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -5.57 Total: -103.30 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.71 Total: -8.67 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -0.69 Total: -0.88 kcal Total: -69.72 1.53 -68.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139085097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.724 kcal (2) G-P(sol) polarization free energy of solvation -69.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds