Wall clock time and date at job start Tue Mar 31 2020 15:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47269 * 2 1 4 4 C 1.46896 * 110.99667 * 298.62770 * 3 2 1 5 5 C 1.50703 * 109.47433 * 288.68128 * 4 3 2 6 6 H 1.07998 * 119.99494 * 0.35570 * 5 4 3 7 7 C 1.37869 * 120.00211 * 180.35113 * 5 4 3 8 8 N 1.31515 * 120.00197 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00271 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46849 * 89.99787 * 9 7 5 11 11 H 1.48498 * 109.47177 * 209.99874 * 9 7 5 12 12 H 1.48501 * 109.46735 * 329.99853 * 9 7 5 13 13 C 1.46896 * 110.99668 * 62.58200 * 3 2 1 14 14 C 1.50693 * 109.47651 * 66.05075 * 13 3 2 15 15 C 1.38087 * 120.34892 * 269.97587 * 14 13 3 16 16 N 1.31944 * 120.85131 * 179.75930 * 15 14 13 17 17 C 1.32253 * 121.65728 * 0.52807 * 16 15 14 18 18 O 1.35698 * 119.69082 * 179.75183 * 17 16 15 19 19 C 1.42899 * 116.99679 * 359.72346 * 18 17 16 20 20 C 1.38965 * 120.62294 * 359.47110 * 17 16 15 21 21 Br 1.89101 * 120.45413 * 180.23080 * 20 17 16 22 22 C 1.38485 * 119.09412 * 0.25839 * 20 17 16 23 23 H 1.09006 * 109.47277 * 62.63077 * 1 2 3 24 24 H 1.08999 * 109.47359 * 182.62827 * 1 2 3 25 25 H 1.09000 * 109.47418 * 302.62992 * 1 2 3 26 26 H 1.08998 * 109.47198 * 239.99359 * 2 1 3 27 27 H 1.09003 * 109.46884 * 119.99998 * 2 1 3 28 28 H 1.08997 * 109.47532 * 48.68712 * 4 3 2 29 29 H 1.09008 * 109.47115 * 168.68835 * 4 3 2 30 30 H 0.97000 * 120.00233 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47223 * 306.04198 * 13 3 2 32 32 H 1.09008 * 109.46569 * 186.04422 * 13 3 2 33 33 H 1.08003 * 119.57598 * 0.04177 * 15 14 13 34 34 H 1.09000 * 109.47246 * 299.99587 * 19 18 17 35 35 H 1.08991 * 109.47322 * 60.00076 * 19 18 17 36 36 H 1.09008 * 109.46831 * 180.02562 * 19 18 17 37 37 H 1.07994 * 120.76238 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5756 2.1002 -1.2038 5 6 2.3223 1.5765 -2.4035 6 1 3.0494 0.7869 -2.2845 7 6 2.0771 2.1053 -3.6529 8 7 2.7284 1.6479 -4.6999 9 14 0.8199 3.4715 -3.8587 10 1 1.4900 4.7879 -3.7061 11 1 0.2073 3.3814 -5.2084 12 1 -0.2371 3.3313 -2.8250 13 6 1.5997 2.0917 1.2174 14 6 2.2735 1.4734 2.4151 15 6 1.6721 0.4318 3.0935 16 7 2.2553 -0.1200 4.1405 17 6 3.4258 0.3042 4.5869 18 8 3.9872 -0.2892 5.6704 19 6 3.2559 -1.3566 6.2771 20 6 4.0889 1.3482 3.9532 21 35 5.7653 1.9467 4.5915 22 6 3.5050 1.9447 2.8482 23 1 -0.3634 0.4725 -0.9127 24 1 -0.3634 -1.0266 0.0471 25 1 -0.3634 0.5541 0.8655 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 0.5061 1.9447 -1.3451 29 1 1.7757 3.1655 -1.0880 30 1 2.5556 2.0197 -5.5791 31 1 0.5182 2.0135 1.3282 32 1 1.8824 3.1419 1.1435 33 1 0.7140 0.0612 2.7602 34 1 2.2872 -0.9877 6.6143 35 1 3.1077 -2.1548 5.5499 36 1 3.8149 -1.7410 7.1303 37 1 3.9964 2.7583 2.3355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140164479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:34 Heat of formation + Delta-G solvation = 13.584767 kcal Electronic energy + Delta-G solvation = -20081.974413 eV Core-core repulsion = 16906.609570 eV Total energy + Delta-G solvation = -3175.364843 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84322 -38.53379 -37.08784 -33.30093 -32.77937 -31.90893 -29.79670 -29.58735 -28.11534 -27.06233 -24.98605 -23.42435 -23.06318 -21.65467 -19.33509 -18.55947 -17.42072 -16.79080 -16.23449 -15.30817 -15.20681 -14.88252 -14.63403 -14.38568 -14.10043 -13.58314 -13.27108 -13.15111 -12.65570 -12.40533 -12.12594 -11.87330 -11.68452 -11.46450 -11.42055 -11.32038 -11.03650 -10.65963 -10.53141 -10.36663 -10.16643 -9.97110 -9.66963 -9.51848 -9.33232 -8.59189 -8.41868 -7.41135 -6.07072 -4.04327 0.82864 1.15110 1.54122 2.87057 3.25339 3.33119 3.33605 3.52495 4.18992 4.38829 4.61570 4.82819 4.88382 4.98307 5.08221 5.14127 5.16925 5.25377 5.44123 5.53954 5.60885 5.67314 5.77974 5.86999 5.94627 6.14403 6.28065 6.29401 6.42683 6.70029 6.85848 6.97738 6.98943 7.55641 7.61627 7.81806 7.95340 8.62415 9.02733 9.54208 11.06170 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.003537 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.433125 B = 7914.587952 C = 8871.065783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.056 3.944 3 N -0.519 5.519 4 C 0.158 3.842 5 C -0.506 4.506 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.090 3.910 14 C -0.142 4.142 15 C 0.156 3.844 16 N -0.531 5.531 17 C 0.337 3.663 18 O -0.297 6.297 19 C 0.040 3.960 20 C -0.165 4.165 21 Br -0.030 7.030 22 C 0.007 3.993 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.055 0.945 28 H -0.001 1.001 29 H 0.022 0.978 30 H 0.263 0.737 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.163 0.837 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 -1.456 22.143 22.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.072 4.072 3 N -0.242 5.242 4 C 0.032 3.968 5 C -0.544 4.544 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.038 4.038 14 C -0.146 4.146 15 C 0.000 4.000 16 N -0.254 5.254 17 C 0.156 3.844 18 O -0.204 6.204 19 C -0.055 4.055 20 C -0.247 4.247 21 Br 0.054 6.946 22 C -0.021 4.021 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.017 0.983 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.180 0.820 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.287 -1.873 22.751 22.864 hybrid contribution -1.700 1.085 -0.866 2.195 sum -0.413 -0.788 21.885 21.903 Atomic orbital electron populations 1.22439 0.99344 1.01357 1.01955 1.22057 0.91986 0.91061 1.02129 1.62244 1.59133 1.01910 1.00920 1.20275 0.94652 0.93752 0.88110 1.20991 1.22878 1.21234 0.89342 0.90193 1.24886 0.95900 0.96621 0.95881 1.69889 1.41969 1.42816 0.99217 0.86906 0.82359 0.83124 0.77605 1.20166 1.21246 1.19292 1.20999 0.96598 0.98124 0.88123 1.20798 0.95978 0.98834 0.98995 1.22509 0.98552 0.90637 0.88316 1.67473 1.09807 1.31277 1.16880 1.19368 0.88541 0.89176 0.87312 1.86319 1.45879 1.48666 1.39507 1.22883 0.96956 0.88223 0.97476 1.21701 0.97247 1.02997 1.02764 1.96684 1.21793 1.88322 1.87790 1.21386 0.92913 0.97031 0.90758 0.91439 0.92849 0.93525 0.89457 0.92670 0.98321 0.95981 0.92665 0.93740 0.90006 0.82017 0.92280 0.92118 0.88550 0.82952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.95 9.14 37.16 0.34 -2.61 16 2 C 0.06 0.98 5.56 -3.83 -0.02 0.96 16 3 N -0.52 -9.92 4.65 -237.52 -1.11 -11.03 16 4 C 0.16 3.56 3.64 -4.98 -0.02 3.54 16 5 C -0.51 -13.83 9.12 -34.44 -0.31 -14.14 16 6 H 0.08 2.42 7.70 -52.49 -0.40 2.01 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 9 Si 0.87 20.79 27.46 -169.99 -4.67 16.12 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.08 6.55 56.52 0.37 -5.71 16 13 C 0.09 1.36 4.93 -4.98 -0.02 1.34 16 14 C -0.14 -1.97 4.90 -104.48 -0.51 -2.48 16 15 C 0.16 2.04 9.09 -17.56 -0.16 1.88 16 16 N -0.53 -7.24 9.22 -13.30 -0.12 -7.36 16 17 C 0.34 4.67 7.48 -17.10 -0.13 4.54 16 18 O -0.30 -3.75 9.83 -18.80 -0.18 -3.93 16 19 C 0.04 0.36 10.38 101.05 1.05 1.41 16 20 C -0.16 -2.27 6.26 -39.22 -0.25 -2.51 16 21 Br -0.03 -0.38 33.20 -68.01 -2.26 -2.63 16 22 C 0.01 0.09 9.62 -39.29 -0.38 -0.29 16 23 H 0.07 1.19 6.34 -51.93 -0.33 0.86 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.62 5.61 -51.93 -0.29 0.33 16 26 H 0.09 1.78 7.19 -51.93 -0.37 1.40 16 27 H 0.05 0.88 5.99 -51.93 -0.31 0.57 16 28 H 0.00 -0.02 4.97 -51.93 -0.26 -0.28 16 29 H 0.02 0.50 7.23 -51.92 -0.38 0.12 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.04 0.62 5.98 -51.93 -0.31 0.31 16 32 H 0.08 1.19 7.82 -51.92 -0.41 0.79 16 33 H 0.16 1.83 7.27 -52.48 -0.38 1.45 16 34 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 35 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 319.64 15.07 4.82 4.82 Total: -1.00 -30.16 319.64 -7.97 -38.13 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -4.72 Total: -1.29 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -0.51 Total: -6.52 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -0.45 Total: -44.69 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.18 Total: -3.93 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -2.26 Total: -2.63 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.16 -7.97 -38.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140164479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.715 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds