Wall clock time and date at job start Tue Mar 31 2020 15:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47269 * 2 1 4 4 C 1.46896 * 110.99667 * 298.62770 * 3 2 1 5 5 C 1.50703 * 109.47433 * 288.68128 * 4 3 2 6 6 H 1.07998 * 119.99494 * 0.35570 * 5 4 3 7 7 C 1.37869 * 120.00211 * 180.35113 * 5 4 3 8 8 N 1.31515 * 120.00197 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00271 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46849 * 89.99787 * 9 7 5 11 11 H 1.48498 * 109.47177 * 209.99874 * 9 7 5 12 12 H 1.48501 * 109.46735 * 329.99853 * 9 7 5 13 13 C 1.46896 * 110.99668 * 62.58200 * 3 2 1 14 14 C 1.50693 * 109.47651 * 66.05075 * 13 3 2 15 15 C 1.38087 * 120.34892 * 269.97587 * 14 13 3 16 16 N 1.31944 * 120.85131 * 179.75930 * 15 14 13 17 17 C 1.32253 * 121.65728 * 0.52807 * 16 15 14 18 18 O 1.35698 * 119.69082 * 179.75183 * 17 16 15 19 19 C 1.42899 * 116.99679 * 359.72346 * 18 17 16 20 20 C 1.38965 * 120.62294 * 359.47110 * 17 16 15 21 21 Br 1.89101 * 120.45413 * 180.23080 * 20 17 16 22 22 C 1.38485 * 119.09412 * 0.25839 * 20 17 16 23 23 H 1.09006 * 109.47277 * 62.63077 * 1 2 3 24 24 H 1.08999 * 109.47359 * 182.62827 * 1 2 3 25 25 H 1.09000 * 109.47418 * 302.62992 * 1 2 3 26 26 H 1.08998 * 109.47198 * 239.99359 * 2 1 3 27 27 H 1.09003 * 109.46884 * 119.99998 * 2 1 3 28 28 H 1.08997 * 109.47532 * 48.68712 * 4 3 2 29 29 H 1.09008 * 109.47115 * 168.68835 * 4 3 2 30 30 H 0.97000 * 120.00233 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47223 * 306.04198 * 13 3 2 32 32 H 1.09008 * 109.46569 * 186.04422 * 13 3 2 33 33 H 1.08003 * 119.57598 * 0.04177 * 15 14 13 34 34 H 1.09000 * 109.47246 * 299.99587 * 19 18 17 35 35 H 1.08991 * 109.47322 * 60.00076 * 19 18 17 36 36 H 1.09008 * 109.46831 * 180.02562 * 19 18 17 37 37 H 1.07994 * 120.76238 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5756 2.1002 -1.2038 5 6 2.3223 1.5765 -2.4035 6 1 3.0494 0.7869 -2.2845 7 6 2.0771 2.1053 -3.6529 8 7 2.7284 1.6479 -4.6999 9 14 0.8199 3.4715 -3.8587 10 1 1.4900 4.7879 -3.7061 11 1 0.2073 3.3814 -5.2084 12 1 -0.2371 3.3313 -2.8250 13 6 1.5997 2.0917 1.2174 14 6 2.2735 1.4734 2.4151 15 6 1.6721 0.4318 3.0935 16 7 2.2553 -0.1200 4.1405 17 6 3.4258 0.3042 4.5869 18 8 3.9872 -0.2892 5.6704 19 6 3.2559 -1.3566 6.2771 20 6 4.0889 1.3482 3.9532 21 35 5.7653 1.9467 4.5915 22 6 3.5050 1.9447 2.8482 23 1 -0.3634 0.4725 -0.9127 24 1 -0.3634 -1.0266 0.0471 25 1 -0.3634 0.5541 0.8655 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 0.5061 1.9447 -1.3451 29 1 1.7757 3.1655 -1.0880 30 1 2.5556 2.0197 -5.5791 31 1 0.5182 2.0135 1.3282 32 1 1.8824 3.1419 1.1435 33 1 0.7140 0.0612 2.7602 34 1 2.2872 -0.9877 6.6143 35 1 3.1077 -2.1548 5.5499 36 1 3.8149 -1.7410 7.1303 37 1 3.9964 2.7583 2.3355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140164479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:33 Heat of formation + Delta-G solvation = -7.991123 kcal Electronic energy + Delta-G solvation = -20082.910014 eV Core-core repulsion = 16906.609570 eV Total energy + Delta-G solvation = -3176.300444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.85973 -39.64694 -38.36304 -34.75929 -34.30739 -33.15432 -31.31322 -30.61681 -29.44349 -28.19408 -26.25281 -24.69262 -24.37266 -22.99736 -20.81541 -19.51297 -18.86046 -18.41857 -17.18868 -16.70919 -16.64332 -16.16175 -15.89769 -15.64076 -15.29552 -14.66879 -14.58066 -14.37648 -14.28721 -13.84563 -13.27476 -13.21300 -12.84935 -12.78298 -12.70390 -12.42402 -12.32242 -12.16179 -12.04422 -11.84397 -11.56172 -11.42624 -11.34375 -10.74311 -10.70277 -10.57441 -9.45903 -8.87052 -8.22813 -6.25249 -0.19584 0.09535 0.52854 1.39038 1.40044 1.50162 1.97013 2.38566 2.46845 3.11349 3.22643 3.40092 3.62454 3.85448 3.95850 4.06509 4.26121 4.38687 4.44028 4.44581 4.54477 4.57708 4.67786 4.74660 4.76299 4.82119 4.97753 5.11802 5.17095 5.25561 5.29856 5.48853 5.61794 6.02387 6.05744 6.42335 6.59909 6.70429 6.81675 7.37906 8.94283 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.003537 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.433125 B = 7914.587952 C = 8871.065783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.059 3.941 3 N -0.539 5.539 4 C 0.168 3.832 5 C -0.509 4.509 6 H 0.031 0.969 7 C 0.005 3.995 8 N -0.953 5.953 9 Si 0.946 3.054 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.243 1.243 13 C 0.095 3.905 14 C -0.150 4.150 15 C 0.161 3.839 16 N -0.535 5.535 17 C 0.332 3.668 18 O -0.307 6.307 19 C 0.035 3.965 20 C -0.178 4.178 21 Br -0.023 7.023 22 C 0.003 3.997 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.007 0.993 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.184 0.816 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.124 0.876 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.527 -0.690 24.213 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.069 4.069 3 N -0.263 5.263 4 C 0.041 3.959 5 C -0.547 4.547 6 H 0.050 0.950 7 C -0.191 4.191 8 N -0.594 5.594 9 Si 0.769 3.231 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.167 1.167 13 C -0.033 4.033 14 C -0.154 4.154 15 C 0.004 3.996 16 N -0.259 5.259 17 C 0.151 3.849 18 O -0.213 6.213 19 C -0.060 4.060 20 C -0.261 4.261 21 Br 0.061 6.939 22 C -0.025 4.025 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.024 0.976 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.200 0.800 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.515 -1.118 24.870 24.900 hybrid contribution -1.023 0.719 -1.405 1.881 sum -1.539 -0.399 23.464 23.518 Atomic orbital electron populations 1.22346 0.97103 1.02909 1.01888 1.21954 0.93810 0.90161 1.00941 1.62053 1.60289 1.02575 1.01356 1.20010 0.94094 0.93979 0.87771 1.21262 1.21984 1.19782 0.91681 0.95045 1.25847 0.98315 0.99599 0.95378 1.70068 1.44418 1.45022 0.99925 0.85738 0.79909 0.79449 0.77974 1.19198 1.21362 1.16678 1.21001 0.97876 0.98004 0.86426 1.20689 0.96229 0.99560 0.98930 1.22817 0.99050 0.89935 0.87782 1.67541 1.09847 1.31404 1.17141 1.19569 0.88605 0.89171 0.87589 1.86316 1.46522 1.49388 1.39091 1.23138 0.97545 0.87220 0.98057 1.21822 0.97800 1.03383 1.03050 1.96677 1.21265 1.88228 1.87711 1.21509 0.93018 0.97163 0.90788 0.93824 0.90886 0.90768 0.93590 0.90925 0.97567 0.95297 0.92662 0.91698 0.89444 0.79967 0.91916 0.92401 0.85744 0.82583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.19 9.14 71.98 0.66 -4.53 16 2 C 0.06 2.05 5.56 86.30 0.48 2.53 16 3 N -0.54 -20.10 4.65 -905.39 -4.21 -24.31 16 4 C 0.17 7.42 3.64 85.56 0.31 7.74 16 5 C -0.51 -28.54 9.12 25.60 0.23 -28.31 16 6 H 0.03 2.01 7.70 -2.91 -0.02 1.99 16 7 C 0.01 0.29 5.47 84.65 0.46 0.76 16 8 N -0.95 -59.29 13.96 21.44 0.30 -59.00 16 9 Si 0.95 42.57 27.46 68.60 1.88 44.46 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.24 -9.91 6.55 99.48 0.65 -9.25 16 13 C 0.09 2.62 4.93 85.56 0.42 3.05 16 14 C -0.15 -3.85 4.90 -19.77 -0.10 -3.94 16 15 C 0.16 3.77 9.09 84.64 0.77 4.54 16 16 N -0.54 -13.45 9.22 -308.86 -2.85 -16.30 16 17 C 0.33 8.67 7.48 84.80 0.63 9.30 16 18 O -0.31 -7.23 9.83 -90.18 -0.89 -8.11 16 19 C 0.03 0.56 10.38 113.37 1.18 1.74 16 20 C -0.18 -4.68 6.26 22.50 0.14 -4.54 16 21 Br -0.02 -0.55 33.20 -20.37 -0.68 -1.23 16 22 C 0.00 0.07 9.62 22.46 0.22 0.28 16 23 H 0.04 1.45 6.34 -2.38 -0.02 1.43 16 24 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.07 1.68 5.61 -2.39 -0.01 1.66 16 26 H 0.05 1.94 7.19 -2.39 -0.02 1.92 16 27 H 0.07 2.22 5.99 -2.39 -0.01 2.21 16 28 H 0.01 0.29 4.97 -2.39 -0.01 0.28 16 29 H 0.03 1.25 7.23 -2.38 -0.02 1.23 16 30 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.07 1.55 5.98 -2.39 -0.01 1.54 16 32 H 0.09 2.33 7.82 -2.38 -0.02 2.31 16 33 H 0.18 3.43 7.27 -2.91 -0.02 3.41 16 34 H 0.06 0.97 8.11 -2.39 -0.02 0.95 16 35 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 36 H 0.12 1.27 8.14 -2.38 -0.02 1.26 16 37 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -66.90 319.64 0.00 -66.90 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.03 Total: 8.98 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 5.41 Total: -11.40 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -6.76 Total: -99.60 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.89 Total: -8.11 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.88 Total: 44.46 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -0.68 Total: -1.23 kcal Total: -66.90 0.00 -66.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140164479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.913 kcal (2) G-P(sol) polarization free energy of solvation -66.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds