Wall clock time and date at job start Tue Mar 31 2020 15:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34301 * 126.59238 * 2 1 4 4 N 1.37127 * 109.80456 * 179.57050 * 3 2 1 5 5 H 0.97002 * 124.98781 * 179.97438 * 4 3 2 6 6 C 1.36776 * 110.01831 * 0.52745 * 4 3 2 7 7 N 1.33200 * 134.28404 * 179.35293 * 6 4 3 8 8 C 1.31665 * 120.69952 * 180.02562 * 7 6 4 9 9 Cl 1.73599 * 118.66293 * 180.02562 * 8 7 6 10 10 N 1.32204 * 122.67855 * 359.97438 * 8 7 6 11 11 C 1.32943 * 121.02455 * 0.02562 * 10 8 7 12 12 N 1.38525 * 120.82403 * 179.97438 * 11 10 8 13 13 C 1.38442 * 120.00257 * 355.28759 * 12 11 10 14 14 C 1.38947 * 119.99866 * 301.54114 * 13 12 11 15 15 H 1.07997 * 119.99937 * 151.05849 * 14 13 12 16 16 C 1.40866 * 120.00236 * 331.06006 * 14 13 12 17 17 N 1.30319 * 120.00356 * 167.58710 * 16 14 13 18 18 Si 1.86799 * 119.99668 * 347.58355 * 16 14 13 19 19 H 1.48505 * 109.47274 * 89.15952 * 18 16 14 20 20 H 1.48507 * 109.47159 * 209.15845 * 18 16 14 21 21 H 1.48494 * 109.47359 * 329.15792 * 18 16 14 22 22 C 1.41128 * 120.00244 * 121.53854 * 13 12 11 23 23 C 1.43201 * 120.00216 * 175.28649 * 22 13 12 24 24 N 7.94117 * 75.56503 * 175.31204 * 2 1 3 25 25 C 1.43197 * 119.99780 * 355.01014 * 22 13 12 26 26 N 5.44521 * 65.74608 * 142.35562 * 2 1 3 27 27 C 1.40305 * 118.35004 * 0.24738 * 11 10 8 28 28 H 1.09000 * 109.47038 * 269.97435 * 1 2 3 29 29 H 1.08999 * 109.47333 * 29.97307 * 1 2 3 30 30 H 1.09002 * 109.47405 * 149.97729 * 1 2 3 31 31 H 1.07999 * 125.09936 * 0.02562 * 3 2 1 32 32 H 0.96998 * 119.99848 * 175.29510 * 12 11 10 33 33 H 0.97003 * 119.99963 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3076 1.0783 0.0000 4 7 3.6204 0.6823 0.0097 5 1 4.3824 1.2825 0.0112 6 6 3.6975 -0.6833 0.0044 7 7 4.7020 -1.5581 -0.0014 8 6 4.4654 -2.8533 -0.0061 9 17 5.8143 -3.9461 -0.0130 10 7 3.2425 -3.3555 -0.0049 11 6 2.1759 -2.5620 0.0008 12 7 0.8964 -3.0927 0.0016 13 6 0.7145 -4.4612 -0.1020 14 6 1.2122 -5.1468 -1.2033 15 1 1.5024 -6.1827 -1.1086 16 6 1.3384 -4.4906 -2.4434 17 7 2.0208 -5.0429 -3.4065 18 14 0.5275 -2.8286 -2.7074 19 1 1.4650 -1.7504 -2.3024 20 1 0.1804 -2.6695 -4.1425 21 1 -0.7075 -2.7446 -1.8872 22 6 0.0236 -5.1600 0.9109 23 6 -0.2529 -6.5566 0.7565 24 7 -0.4726 -7.6648 0.6285 25 6 -0.3957 -4.4739 2.0958 26 7 -0.7298 -3.9310 3.0322 27 6 2.3784 -1.1736 0.0001 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 1.9683 2.1036 0.0004 32 1 0.1278 -2.5055 0.0747 33 1 2.1080 -4.5909 -4.2603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158211172.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:35 Heat of formation + Delta-G solvation = 145.854652 kcal Electronic energy + Delta-G solvation = -24926.574141 eV Core-core repulsion = 21207.433963 eV Total energy + Delta-G solvation = -3719.140177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.87798 -39.01975 -37.74959 -36.37981 -35.47575 -34.79870 -34.27688 -33.03655 -32.00997 -30.82490 -29.09636 -27.31014 -26.63740 -23.99624 -23.41221 -21.26877 -19.94890 -19.26549 -18.96343 -17.72870 -17.23658 -16.52766 -16.25650 -16.11345 -15.50924 -15.02022 -14.47022 -13.78027 -13.69106 -13.40725 -13.19724 -12.95989 -12.87946 -12.79035 -12.59843 -12.30563 -12.20985 -11.79564 -11.66143 -11.56365 -11.39672 -11.12872 -11.01710 -10.94943 -10.68826 -10.56440 -10.54442 -10.01122 -9.11539 -9.02057 -8.89945 -8.16614 -7.79031 -7.38402 -5.40104 0.96253 1.48818 1.60976 2.03026 2.51073 2.60580 2.71849 2.75779 2.81262 3.24236 3.34835 3.82678 3.99883 4.03640 4.22964 4.28519 4.47402 4.59160 4.79280 4.97503 5.09457 5.12812 5.21751 5.47621 5.59067 5.71665 5.78884 5.94857 6.11092 6.31876 6.39412 6.67771 6.82338 6.95593 7.15536 7.30780 7.50241 7.66158 7.81430 8.05803 8.41330 8.88097 9.13338 9.16165 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009834 B = 0.006570 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.564507 B = 4260.762488 C = 4878.636720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.127 4.127 3 C 0.035 3.965 4 N -0.567 5.567 5 H 0.422 0.578 6 C 0.357 3.643 7 N -0.564 5.564 8 C 0.431 3.569 9 Cl 0.023 6.977 10 N -0.540 5.540 11 C 0.513 3.487 12 N -0.648 5.648 13 C 0.328 3.672 14 C -0.317 4.317 15 H 0.126 0.874 16 C 0.075 3.925 17 N -0.718 5.718 18 Si 0.901 3.099 19 H -0.244 1.244 20 H -0.278 1.278 21 H -0.246 1.246 22 C -0.295 4.295 23 C 0.325 3.675 24 N -0.525 5.525 25 C 0.307 3.693 26 N -0.531 5.531 27 C -0.254 4.254 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.180 0.820 32 H 0.412 0.588 33 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 15.846 -3.001 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C -0.089 4.089 4 N -0.174 5.174 5 H 0.260 0.740 6 C 0.117 3.883 7 N -0.293 5.293 8 C 0.133 3.867 9 Cl 0.051 6.949 10 N -0.268 5.268 11 C 0.265 3.735 12 N -0.279 5.279 13 C 0.227 3.773 14 C -0.344 4.344 15 H 0.144 0.856 16 C -0.157 4.157 17 N -0.335 5.335 18 Si 0.724 3.276 19 H -0.168 1.168 20 H -0.204 1.204 21 H -0.169 1.169 22 C -0.313 4.313 23 C 0.016 3.984 24 N -0.207 5.207 25 C 0.000 4.000 26 N -0.213 5.213 27 C -0.268 4.268 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.198 0.802 32 H 0.254 0.746 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.449 14.200 -2.032 15.019 hybrid contribution -0.257 1.730 -0.625 1.857 sum 4.192 15.930 -2.656 16.685 Atomic orbital electron populations 1.20353 0.89286 1.02579 1.02733 1.20050 0.95270 0.90067 1.08207 1.21544 0.80912 0.99118 1.07355 1.41306 1.08355 1.03237 1.64547 0.74029 1.17629 0.88503 0.85215 0.96942 1.66546 1.35023 1.01247 1.26513 1.21938 0.87243 0.84845 0.92625 1.98413 1.40216 1.60186 1.96102 1.67604 0.96518 1.38021 1.24664 1.17451 0.85642 0.85321 0.85082 1.42383 1.04015 1.07811 1.73699 1.16790 0.90438 0.78465 0.91650 1.19995 1.22993 1.00951 0.90485 0.85593 1.26716 0.92841 1.00593 0.95597 1.69390 1.21919 1.37928 1.04243 0.86432 0.81767 0.80380 0.78992 1.16849 1.20420 1.16940 1.12682 1.34442 0.86812 0.97365 1.24577 0.90765 0.91133 0.91912 1.81104 1.16887 1.12380 1.10306 1.25095 0.90862 0.92531 0.91516 1.80929 1.17278 1.10444 1.12639 1.19733 0.95680 0.92812 1.18564 0.90569 0.90742 0.92167 0.80248 0.74643 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.79 36.01 0.35 -0.63 16 2 C -0.13 -1.63 6.31 -102.83 -0.65 -2.28 16 3 C 0.04 0.34 11.76 -16.57 -0.19 0.15 16 4 N -0.57 -6.26 6.03 -12.13 -0.07 -6.33 16 5 H 0.42 3.25 8.96 -40.82 -0.37 2.89 16 6 C 0.36 5.63 8.48 -155.85 -1.32 4.31 16 7 N -0.56 -9.80 10.43 -10.95 -0.11 -9.91 16 8 C 0.43 8.05 8.15 -91.91 -0.75 7.30 16 9 Cl 0.02 0.38 29.25 -51.86 -1.52 -1.14 16 10 N -0.54 -10.92 9.06 -10.70 -0.10 -11.01 16 11 C 0.51 9.69 5.20 -154.57 -0.80 8.89 16 12 N -0.65 -12.14 2.23 -9.47 -0.02 -12.16 16 13 C 0.33 6.82 4.96 -83.52 -0.41 6.41 16 14 C -0.32 -6.95 8.03 -38.33 -0.31 -7.26 16 15 H 0.13 3.03 7.50 -52.49 -0.39 2.64 16 16 C 0.07 1.55 5.35 -17.20 -0.09 1.46 16 17 N -0.72 -15.27 13.90 55.60 0.77 -14.50 16 18 Si 0.90 15.92 23.37 -169.99 -3.97 11.95 16 19 H -0.24 -4.29 5.48 56.52 0.31 -3.98 16 20 H -0.28 -4.84 7.11 56.52 0.40 -4.44 16 21 H -0.25 -4.05 6.52 56.52 0.37 -3.68 16 22 C -0.29 -6.42 5.88 -104.95 -0.62 -7.04 16 23 C 0.32 7.53 14.06 -22.44 -0.32 7.21 16 24 N -0.52 -12.74 18.54 41.87 0.78 -11.97 16 25 C 0.31 6.76 14.81 -22.58 -0.33 6.42 16 26 N -0.53 -12.00 18.52 41.71 0.77 -11.22 16 27 C -0.25 -4.22 5.19 -104.99 -0.54 -4.76 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.72 5.00 -51.93 -0.26 0.46 16 31 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.41 6.95 5.23 -40.82 -0.21 6.74 16 33 H 0.30 5.77 8.29 -40.82 -0.34 5.43 16 LS Contribution 317.75 15.07 4.79 4.79 Total: -1.00 -27.83 317.75 -6.44 -34.27 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -1.76 Total: 7.07 kcal Atomic # 6 Polarization: 26.16 SS G_CDS: -5.99 Total: 20.17 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: 2.02 Total: -77.11 kcal Atomic # 14 Polarization: 15.92 SS G_CDS: -3.97 Total: 11.95 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -1.52 Total: -1.14 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.83 -6.44 -34.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211172.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.126 kcal (2) G-P(sol) polarization free energy of solvation -27.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds