Wall clock time and date at job start Tue Mar 31 2020 15:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34301 * 126.59238 * 2 1 4 4 N 1.37127 * 109.80456 * 179.57050 * 3 2 1 5 5 H 0.97002 * 124.98781 * 179.97438 * 4 3 2 6 6 C 1.36776 * 110.01831 * 0.52745 * 4 3 2 7 7 N 1.33200 * 134.28404 * 179.35293 * 6 4 3 8 8 C 1.31665 * 120.69952 * 180.02562 * 7 6 4 9 9 Cl 1.73599 * 118.66293 * 180.02562 * 8 7 6 10 10 N 1.32204 * 122.67855 * 359.97438 * 8 7 6 11 11 C 1.32943 * 121.02455 * 0.02562 * 10 8 7 12 12 N 1.38525 * 120.82403 * 179.97438 * 11 10 8 13 13 C 1.38442 * 120.00257 * 355.28759 * 12 11 10 14 14 C 1.38947 * 119.99866 * 301.54114 * 13 12 11 15 15 H 1.07997 * 119.99937 * 151.05849 * 14 13 12 16 16 C 1.40866 * 120.00236 * 331.06006 * 14 13 12 17 17 N 1.30319 * 120.00356 * 167.58710 * 16 14 13 18 18 Si 1.86799 * 119.99668 * 347.58355 * 16 14 13 19 19 H 1.48505 * 109.47274 * 89.15952 * 18 16 14 20 20 H 1.48507 * 109.47159 * 209.15845 * 18 16 14 21 21 H 1.48494 * 109.47359 * 329.15792 * 18 16 14 22 22 C 1.41128 * 120.00244 * 121.53854 * 13 12 11 23 23 C 1.43201 * 120.00216 * 175.28649 * 22 13 12 24 24 N 7.94117 * 75.56503 * 175.31204 * 2 1 3 25 25 C 1.43197 * 119.99780 * 355.01014 * 22 13 12 26 26 N 5.44521 * 65.74608 * 142.35562 * 2 1 3 27 27 C 1.40305 * 118.35004 * 0.24738 * 11 10 8 28 28 H 1.09000 * 109.47038 * 269.97435 * 1 2 3 29 29 H 1.08999 * 109.47333 * 29.97307 * 1 2 3 30 30 H 1.09002 * 109.47405 * 149.97729 * 1 2 3 31 31 H 1.07999 * 125.09936 * 0.02562 * 3 2 1 32 32 H 0.96998 * 119.99848 * 175.29510 * 12 11 10 33 33 H 0.97003 * 119.99963 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3076 1.0783 0.0000 4 7 3.6204 0.6823 0.0097 5 1 4.3824 1.2825 0.0112 6 6 3.6975 -0.6833 0.0044 7 7 4.7020 -1.5581 -0.0014 8 6 4.4654 -2.8533 -0.0061 9 17 5.8143 -3.9461 -0.0130 10 7 3.2425 -3.3555 -0.0049 11 6 2.1759 -2.5620 0.0008 12 7 0.8964 -3.0927 0.0016 13 6 0.7145 -4.4612 -0.1020 14 6 1.2122 -5.1468 -1.2033 15 1 1.5024 -6.1827 -1.1086 16 6 1.3384 -4.4906 -2.4434 17 7 2.0208 -5.0429 -3.4065 18 14 0.5275 -2.8286 -2.7074 19 1 1.4650 -1.7504 -2.3024 20 1 0.1804 -2.6695 -4.1425 21 1 -0.7075 -2.7446 -1.8872 22 6 0.0236 -5.1600 0.9109 23 6 -0.2529 -6.5566 0.7565 24 7 -0.4726 -7.6648 0.6285 25 6 -0.3957 -4.4739 2.0958 26 7 -0.7298 -3.9310 3.0322 27 6 2.3784 -1.1736 0.0001 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 1.9683 2.1036 0.0004 32 1 0.1278 -2.5055 0.0747 33 1 2.1080 -4.5909 -4.2603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158211172.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:35 Heat of formation + Delta-G solvation = 129.761576 kcal Electronic energy + Delta-G solvation = -24927.271989 eV Core-core repulsion = 21207.433963 eV Total energy + Delta-G solvation = -3719.838026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.01695 -40.28597 -39.16324 -37.72613 -37.15588 -36.61186 -35.83939 -34.36052 -33.11102 -32.24866 -30.37098 -29.02251 -27.52423 -25.28449 -24.67692 -22.83084 -21.16175 -20.80489 -20.00152 -19.30338 -18.60276 -18.07240 -17.57351 -17.36894 -16.78146 -16.32549 -15.76149 -15.00394 -14.86690 -14.68419 -14.54647 -14.49679 -14.40495 -14.02158 -13.83886 -13.55019 -13.52485 -13.44783 -13.33119 -13.03358 -12.95164 -12.79636 -12.55763 -12.42733 -12.13946 -11.90160 -11.72776 -11.45539 -10.54949 -10.36887 -10.07327 -9.59679 -9.34902 -8.61344 -7.16000 -0.28970 0.15752 0.33077 0.49991 1.14958 1.32722 1.37534 1.58628 1.79619 1.82621 1.90704 2.04617 2.20752 2.47358 2.55277 2.74252 3.31816 3.35820 3.48082 3.66263 3.75897 3.96951 4.07694 4.42013 4.50670 4.67277 4.72616 4.87510 4.92401 5.12136 5.32948 5.39116 5.49249 5.63548 5.73533 5.80545 6.03299 6.23562 6.38398 6.63669 7.07973 7.11495 7.29855 7.60436 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009834 B = 0.006570 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.564507 B = 4260.762488 C = 4878.636720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.161 4.161 3 C 0.080 3.920 4 N -0.548 5.548 5 H 0.440 0.560 6 C 0.328 3.672 7 N -0.559 5.559 8 C 0.405 3.595 9 Cl 0.026 6.974 10 N -0.571 5.571 11 C 0.490 3.510 12 N -0.648 5.648 13 C 0.343 3.657 14 C -0.327 4.327 15 H 0.093 0.907 16 C 0.049 3.951 17 N -0.744 5.744 18 Si 0.941 3.059 19 H -0.239 1.239 20 H -0.271 1.271 21 H -0.228 1.228 22 C -0.304 4.304 23 C 0.328 3.672 24 N -0.552 5.552 25 C 0.316 3.684 26 N -0.540 5.540 27 C -0.259 4.259 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.043 0.957 31 H 0.239 0.761 32 H 0.421 0.579 33 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 20.143 -3.325 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.169 4.169 3 C -0.045 4.045 4 N -0.156 5.156 5 H 0.282 0.718 6 C 0.088 3.912 7 N -0.288 5.288 8 C 0.108 3.892 9 Cl 0.054 6.946 10 N -0.300 5.300 11 C 0.244 3.756 12 N -0.281 5.281 13 C 0.241 3.759 14 C -0.354 4.354 15 H 0.111 0.889 16 C -0.181 4.181 17 N -0.362 5.362 18 Si 0.761 3.239 19 H -0.163 1.163 20 H -0.197 1.197 21 H -0.151 1.151 22 C -0.322 4.322 23 C 0.021 3.979 24 N -0.235 5.235 25 C 0.009 3.991 26 N -0.222 5.222 27 C -0.273 4.273 28 H 0.096 0.904 29 H 0.128 0.872 30 H 0.061 0.939 31 H 0.255 0.745 32 H 0.264 0.736 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.944 18.529 -2.346 19.089 hybrid contribution 0.028 0.519 -0.540 0.749 sum 3.973 19.047 -2.885 19.670 Atomic orbital electron populations 1.20418 0.87842 1.03468 1.03181 1.20419 0.96548 0.89221 1.10713 1.22501 0.79329 1.00797 1.01898 1.41475 1.09949 1.01529 1.62677 0.71846 1.17954 0.88038 0.86981 0.98237 1.66551 1.35693 1.01000 1.25527 1.22024 0.87154 0.85541 0.94497 1.98395 1.39760 1.60249 1.96194 1.67464 0.97495 1.39559 1.25490 1.17643 0.85054 0.86458 0.86450 1.42196 1.04619 1.06666 1.74655 1.16563 0.89131 0.79738 0.90471 1.19876 1.23851 0.99751 0.91924 0.88906 1.27363 0.92859 1.03125 0.94702 1.69393 1.22523 1.39311 1.04976 0.85843 0.81794 0.76863 0.79448 1.16312 1.19683 1.15098 1.12744 1.35352 0.86258 0.97887 1.24849 0.90263 0.91450 0.91315 1.81080 1.18137 1.13097 1.11148 1.25000 0.90533 0.92285 0.91294 1.80919 1.17784 1.10784 1.12757 1.20110 0.97234 0.92687 1.17301 0.90396 0.87211 0.93851 0.74461 0.73578 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.58 9.79 71.24 0.70 -0.88 16 2 C -0.16 -3.46 6.31 -18.70 -0.12 -3.57 16 3 C 0.08 1.08 11.76 82.97 0.98 2.05 16 4 N -0.55 -9.64 6.03 -192.28 -1.16 -10.80 16 5 H 0.44 4.68 8.96 -92.71 -0.83 3.84 16 6 C 0.33 9.60 8.48 133.96 1.14 10.74 16 7 N -0.56 -18.97 10.43 -188.56 -1.97 -20.93 16 8 C 0.41 15.28 8.15 180.80 1.47 16.76 16 9 Cl 0.03 0.89 29.25 -2.72 -0.08 0.81 16 10 N -0.57 -23.48 9.06 -187.76 -1.70 -25.18 16 11 C 0.49 18.28 5.20 133.35 0.69 18.97 16 12 N -0.65 -23.94 2.23 -183.88 -0.41 -24.35 16 13 C 0.34 14.49 4.96 38.98 0.19 14.68 16 14 C -0.33 -14.80 8.03 23.08 0.19 -14.61 16 15 H 0.09 4.75 7.50 -2.91 -0.02 4.73 16 16 C 0.05 2.08 5.35 85.56 0.46 2.53 16 17 N -0.74 -32.26 13.90 21.98 0.31 -31.96 16 18 Si 0.94 31.52 23.37 68.60 1.60 33.12 16 19 H -0.24 -7.83 5.48 99.48 0.54 -7.28 16 20 H -0.27 -8.69 7.11 99.48 0.71 -7.99 16 21 H -0.23 -6.93 6.52 99.48 0.65 -6.29 16 22 C -0.30 -13.44 5.88 -20.08 -0.12 -13.56 16 23 C 0.33 15.65 14.06 88.32 1.24 16.89 16 24 N -0.55 -27.54 18.54 19.02 0.35 -27.19 16 25 C 0.32 13.86 14.81 88.37 1.31 15.17 16 26 N -0.54 -24.08 18.52 18.96 0.35 -23.73 16 27 C -0.26 -8.06 5.19 -20.10 -0.10 -8.16 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.04 0.89 5.00 -2.39 -0.01 0.88 16 31 H 0.24 0.44 8.06 -2.91 -0.02 0.42 16 32 H 0.42 13.68 5.23 -92.71 -0.48 13.20 16 33 H 0.31 12.00 8.29 -92.71 -0.77 11.23 16 Total: -1.00 -63.17 317.75 5.04 -58.13 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -0.28 Total: 15.07 kcal Atomic # 6 Polarization: 48.98 SS G_CDS: 8.02 Total: 57.00 kcal Atomic # 7 Polarization: -159.90 SS G_CDS: -4.23 Total: -164.13 kcal Atomic # 14 Polarization: 31.52 SS G_CDS: 1.60 Total: 33.12 kcal Atomic # 17 Polarization: 0.89 SS G_CDS: -0.08 Total: 0.81 kcal Total: -63.17 5.04 -58.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211172.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.891 kcal (2) G-P(sol) polarization free energy of solvation -63.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds