Wall clock time and date at job start Tue Mar 31 2020 15:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37113 * 124.99186 * 2 1 4 4 C 1.34301 * 109.82003 * 180.29895 * 3 2 1 5 5 C 1.46176 * 106.81163 * 359.78364 * 4 3 2 6 6 C 1.36791 * 124.99069 * 179.97438 * 2 1 3 7 7 N 1.33175 * 134.28092 * 0.02562 * 6 2 1 8 8 C 1.31688 * 120.68980 * 179.67606 * 7 6 2 9 9 Cl 1.73596 * 118.66014 * 180.02562 * 8 7 6 10 10 N 1.32172 * 122.68031 * 359.97438 * 8 7 6 11 11 C 1.32979 * 121.03294 * 359.97438 * 10 8 7 12 12 N 1.38519 * 120.82889 * 180.02562 * 11 10 8 13 13 C 1.38442 * 120.00060 * 355.33544 * 12 11 10 14 14 C 1.38951 * 119.99679 * 301.29593 * 13 12 11 15 15 H 1.08001 * 119.99551 * 151.34065 * 14 13 12 16 16 C 1.40872 * 120.00013 * 331.34562 * 14 13 12 17 17 N 1.30322 * 119.99477 * 167.97324 * 16 14 13 18 18 Si 1.86791 * 119.99974 * 347.96629 * 16 14 13 19 19 H 1.48506 * 109.47156 * 89.41404 * 18 16 14 20 20 H 1.48503 * 109.47153 * 209.41092 * 18 16 14 21 21 H 1.48505 * 109.47473 * 329.41487 * 18 16 14 22 22 C 1.41129 * 120.00014 * 121.30175 * 13 12 11 23 23 C 1.43204 * 119.99655 * 175.25562 * 22 13 12 24 24 N 9.31553 * 154.00641 * 189.79873 * 2 1 3 25 25 C 1.43192 * 120.00272 * 355.25700 * 22 13 12 26 26 N 7.01812 * 152.87685 * 253.32850 * 2 1 3 27 27 H 1.09001 * 109.47029 * 270.06126 * 1 2 3 28 28 H 1.08998 * 109.47311 * 30.06375 * 1 2 3 29 29 H 1.08998 * 109.47250 * 150.07014 * 1 2 3 30 30 H 1.08005 * 125.09179 * 0.08458 * 3 2 1 31 31 H 1.08000 * 126.59508 * 179.77427 * 4 3 2 32 32 H 0.97000 * 119.99787 * 175.33053 * 12 11 10 33 33 H 0.97003 * 119.99458 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.1233 0.0000 4 6 3.5475 0.7718 -0.0066 5 6 3.5893 -0.6894 -0.0059 6 6 2.2494 -1.1207 0.0005 7 7 2.0015 -2.4291 0.0007 8 6 2.9890 -3.3003 -0.0052 9 17 2.6056 -4.9934 -0.0054 10 7 4.2601 -2.9382 -0.0120 11 6 4.6072 -1.6545 -0.0137 12 7 5.9407 -1.2797 -0.0214 13 6 6.9310 -2.2428 0.0702 14 6 6.9745 -3.0922 1.1690 15 1 7.3904 -4.0839 1.0688 16 6 6.4760 -2.6599 2.4136 17 7 6.2983 -3.5183 3.3780 18 14 6.0699 -0.8565 2.6816 19 1 4.6585 -0.6041 2.2948 20 1 6.2593 -0.5140 4.1142 21 1 6.9690 -0.0175 1.8490 22 6 7.8963 -2.3618 -0.9524 23 6 8.9792 -3.2882 -0.8105 24 7 9.8382 -4.0232 -0.6948 25 6 7.7931 -1.5564 -2.1318 26 7 7.7113 -0.9179 -3.0651 27 1 -0.3633 0.0011 1.0277 28 1 -0.3634 0.8894 -0.5148 29 1 -0.3633 -0.8906 -0.5127 30 1 1.8834 2.1387 0.0013 31 1 4.3958 1.4402 -0.0116 32 1 6.1807 -0.3424 -0.0910 33 1 5.9554 -3.2205 4.2352 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158211484.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:21 Heat of formation + Delta-G solvation = 155.954140 kcal Electronic energy + Delta-G solvation = -24648.699823 eV Core-core repulsion = 20929.997592 eV Total energy + Delta-G solvation = -3718.702231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.83825 -39.11765 -37.68619 -36.37880 -35.41408 -34.77241 -34.19962 -32.99696 -32.27556 -30.64872 -28.55741 -27.33177 -26.74404 -23.79388 -23.11178 -21.42862 -20.46462 -19.24524 -18.49707 -17.69413 -17.07680 -16.58486 -16.34411 -15.86480 -15.72167 -14.93509 -14.43639 -14.26527 -13.68489 -13.40133 -13.25539 -13.05759 -12.82104 -12.67351 -12.54689 -12.43366 -12.24028 -11.78392 -11.66224 -11.55230 -11.37620 -11.11836 -11.00077 -10.91726 -10.72033 -10.63981 -10.53337 -9.99855 -9.15938 -8.98775 -8.77864 -8.18526 -7.77122 -7.38141 -5.38751 0.98701 1.51610 1.61692 2.05372 2.56129 2.58163 2.64044 2.74830 2.79726 3.26497 3.37581 3.83743 4.02251 4.04900 4.22323 4.29148 4.39064 4.56367 4.74865 4.82038 5.01981 5.03805 5.15415 5.27229 5.36672 5.49900 5.60089 5.94936 6.11903 6.22759 6.40937 6.78548 6.81454 6.98929 7.08517 7.26085 7.51521 7.65773 7.82847 8.07397 8.43785 8.89765 9.14489 9.17824 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.005702 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.251403 B = 4909.186995 C = 5247.145429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.465 5.465 3 C 0.037 3.963 4 C -0.159 4.159 5 C -0.258 4.258 6 C 0.354 3.646 7 N -0.563 5.563 8 C 0.430 3.570 9 Cl 0.022 6.978 10 N -0.541 5.541 11 C 0.512 3.488 12 N -0.647 5.647 13 C 0.330 3.670 14 C -0.317 4.317 15 H 0.126 0.874 16 C 0.074 3.926 17 N -0.719 5.719 18 Si 0.905 3.095 19 H -0.245 1.245 20 H -0.279 1.279 21 H -0.246 1.246 22 C -0.295 4.295 23 C 0.325 3.675 24 N -0.526 5.526 25 C 0.308 3.692 26 N -0.532 5.532 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.178 0.822 31 H 0.152 0.848 32 H 0.414 0.586 33 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.112 9.231 3.067 17.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.152 5.152 3 C -0.087 4.087 4 C -0.185 4.185 5 C -0.271 4.271 6 C 0.116 3.884 7 N -0.292 5.292 8 C 0.133 3.867 9 Cl 0.049 6.951 10 N -0.269 5.269 11 C 0.265 3.735 12 N -0.277 5.277 13 C 0.229 3.771 14 C -0.344 4.344 15 H 0.143 0.857 16 C -0.158 4.158 17 N -0.336 5.336 18 Si 0.729 3.271 19 H -0.170 1.170 20 H -0.206 1.206 21 H -0.169 1.169 22 C -0.313 4.313 23 C 0.016 3.984 24 N -0.207 5.207 25 C 0.000 4.000 26 N -0.214 5.214 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.196 0.804 31 H 0.170 0.830 32 H 0.254 0.746 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.533 7.790 2.084 16.621 hybrid contribution -0.407 1.603 0.647 1.776 sum -14.940 9.393 2.731 17.857 Atomic orbital electron populations 1.21989 0.76321 1.04465 1.03258 1.43526 1.06418 1.02889 1.62399 1.21762 0.89890 0.90491 1.06512 1.21478 0.96500 0.91651 1.08856 1.19823 0.93569 0.95417 1.18334 1.17617 0.87170 0.86269 0.97315 1.66502 1.37082 0.99208 1.26396 1.21912 0.83582 0.88453 0.92801 1.98410 1.93600 1.06920 1.96130 1.67587 1.18444 1.16153 1.24705 1.17429 0.84026 0.86916 0.85153 1.42212 1.01577 1.10053 1.73818 1.16764 0.84532 0.84287 0.91549 1.19998 1.22634 1.01360 0.90423 0.85668 1.26736 0.91296 1.02176 0.95588 1.69394 1.21988 1.38076 1.04140 0.86331 0.81920 0.80018 0.78879 1.16966 1.20624 1.16928 1.12675 1.04821 1.16454 0.97375 1.24570 0.90943 0.90961 0.91901 1.81082 1.14131 1.15213 1.10324 1.25126 0.91806 0.91509 0.91510 1.80974 1.11768 1.16082 1.12591 0.91137 0.89806 0.89393 0.80446 0.83020 0.74627 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 11.07 59.85 0.66 1.30 16 2 N -0.46 -5.61 3.16 -123.64 -0.39 -6.00 16 3 C 0.04 0.38 11.30 -16.58 -0.19 0.19 16 4 C -0.16 -2.01 10.98 -37.79 -0.42 -2.42 16 5 C -0.26 -4.29 5.18 -104.99 -0.54 -4.83 16 6 C 0.35 5.75 7.95 -155.85 -1.24 4.51 16 7 N -0.56 -9.89 10.43 -10.95 -0.11 -10.00 16 8 C 0.43 8.06 8.15 -91.92 -0.75 7.31 16 9 Cl 0.02 0.36 29.25 -51.86 -1.52 -1.16 16 10 N -0.54 -10.95 9.07 -10.70 -0.10 -11.04 16 11 C 0.51 9.64 5.17 -154.56 -0.80 8.84 16 12 N -0.65 -11.97 2.23 -9.47 -0.02 -11.99 16 13 C 0.33 6.83 4.97 -83.52 -0.42 6.42 16 14 C -0.32 -6.95 8.06 -38.32 -0.31 -7.25 16 15 H 0.13 3.02 7.50 -52.49 -0.39 2.63 16 16 C 0.07 1.54 5.36 -17.20 -0.09 1.45 16 17 N -0.72 -15.34 13.90 55.60 0.77 -14.57 16 18 Si 0.90 15.92 24.36 -169.99 -4.14 11.78 16 19 H -0.25 -4.30 5.47 56.52 0.31 -3.99 16 20 H -0.28 -4.89 7.11 56.52 0.40 -4.48 16 21 H -0.25 -4.03 6.60 56.52 0.37 -3.65 16 22 C -0.29 -6.43 5.88 -104.95 -0.62 -7.04 16 23 C 0.32 7.56 14.06 -22.46 -0.32 7.24 16 24 N -0.53 -12.81 18.54 41.86 0.78 -12.04 16 25 C 0.31 6.78 14.81 -22.55 -0.33 6.45 16 26 N -0.53 -12.11 18.52 41.75 0.77 -11.33 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.75 8.13 -51.93 -0.42 0.32 16 30 H 0.18 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.41 6.72 7.77 -40.82 -0.32 6.40 16 33 H 0.30 5.78 8.29 -40.82 -0.34 5.44 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -28.38 325.65 -6.48 -34.87 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -2.08 Total: 4.44 kcal Atomic # 6 Polarization: 27.50 SS G_CDS: -5.35 Total: 22.14 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: 1.70 Total: -76.98 kcal Atomic # 14 Polarization: 15.92 SS G_CDS: -4.14 Total: 11.78 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.52 Total: -1.16 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.38 -6.48 -34.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211484.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.822 kcal (2) G-P(sol) polarization free energy of solvation -28.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds