Wall clock time and date at job start Tue Mar 31 2020 15:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37113 * 124.99186 * 2 1 4 4 C 1.34301 * 109.82003 * 180.29895 * 3 2 1 5 5 C 1.46176 * 106.81163 * 359.78364 * 4 3 2 6 6 C 1.36791 * 124.99069 * 179.97438 * 2 1 3 7 7 N 1.33175 * 134.28092 * 0.02562 * 6 2 1 8 8 C 1.31688 * 120.68980 * 179.67606 * 7 6 2 9 9 Cl 1.73596 * 118.66014 * 180.02562 * 8 7 6 10 10 N 1.32172 * 122.68031 * 359.97438 * 8 7 6 11 11 C 1.32979 * 121.03294 * 359.97438 * 10 8 7 12 12 N 1.38519 * 120.82889 * 180.02562 * 11 10 8 13 13 C 1.38442 * 120.00060 * 355.33544 * 12 11 10 14 14 C 1.38951 * 119.99679 * 301.29593 * 13 12 11 15 15 H 1.08001 * 119.99551 * 151.34065 * 14 13 12 16 16 C 1.40872 * 120.00013 * 331.34562 * 14 13 12 17 17 N 1.30322 * 119.99477 * 167.97324 * 16 14 13 18 18 Si 1.86791 * 119.99974 * 347.96629 * 16 14 13 19 19 H 1.48506 * 109.47156 * 89.41404 * 18 16 14 20 20 H 1.48503 * 109.47153 * 209.41092 * 18 16 14 21 21 H 1.48505 * 109.47473 * 329.41487 * 18 16 14 22 22 C 1.41129 * 120.00014 * 121.30175 * 13 12 11 23 23 C 1.43204 * 119.99655 * 175.25562 * 22 13 12 24 24 N 9.31553 * 154.00641 * 189.79873 * 2 1 3 25 25 C 1.43192 * 120.00272 * 355.25700 * 22 13 12 26 26 N 7.01812 * 152.87685 * 253.32850 * 2 1 3 27 27 H 1.09001 * 109.47029 * 270.06126 * 1 2 3 28 28 H 1.08998 * 109.47311 * 30.06375 * 1 2 3 29 29 H 1.08998 * 109.47250 * 150.07014 * 1 2 3 30 30 H 1.08005 * 125.09179 * 0.08458 * 3 2 1 31 31 H 1.08000 * 126.59508 * 179.77427 * 4 3 2 32 32 H 0.97000 * 119.99787 * 175.33053 * 12 11 10 33 33 H 0.97003 * 119.99458 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.1233 0.0000 4 6 3.5475 0.7718 -0.0066 5 6 3.5893 -0.6894 -0.0059 6 6 2.2494 -1.1207 0.0005 7 7 2.0015 -2.4291 0.0007 8 6 2.9890 -3.3003 -0.0052 9 17 2.6056 -4.9934 -0.0054 10 7 4.2601 -2.9382 -0.0120 11 6 4.6072 -1.6545 -0.0137 12 7 5.9407 -1.2797 -0.0214 13 6 6.9310 -2.2428 0.0702 14 6 6.9745 -3.0922 1.1690 15 1 7.3904 -4.0839 1.0688 16 6 6.4760 -2.6599 2.4136 17 7 6.2983 -3.5183 3.3780 18 14 6.0699 -0.8565 2.6816 19 1 4.6585 -0.6041 2.2948 20 1 6.2593 -0.5140 4.1142 21 1 6.9690 -0.0175 1.8490 22 6 7.8963 -2.3618 -0.9524 23 6 8.9792 -3.2882 -0.8105 24 7 9.8382 -4.0232 -0.6948 25 6 7.7931 -1.5564 -2.1318 26 7 7.7113 -0.9179 -3.0651 27 1 -0.3633 0.0011 1.0277 28 1 -0.3634 0.8894 -0.5148 29 1 -0.3633 -0.8906 -0.5127 30 1 1.8834 2.1387 0.0013 31 1 4.3958 1.4402 -0.0116 32 1 6.1807 -0.3424 -0.0910 33 1 5.9554 -3.2205 4.2352 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158211484.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:21 Heat of formation + Delta-G solvation = 140.408737 kcal Electronic energy + Delta-G solvation = -24649.373922 eV Core-core repulsion = 20929.997592 eV Total energy + Delta-G solvation = -3719.376330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.96498 -40.36195 -39.11720 -37.72983 -37.10713 -36.59433 -35.76686 -34.26377 -33.39790 -32.09982 -29.77128 -29.01950 -27.62551 -25.01226 -24.36953 -22.91892 -21.63457 -20.80747 -19.65399 -19.25605 -18.46603 -18.03483 -17.61777 -17.08390 -16.94538 -16.25587 -15.57291 -15.41807 -14.91190 -14.65124 -14.56544 -14.51834 -14.41126 -14.08287 -13.90869 -13.52609 -13.43410 -13.32212 -13.19183 -13.15692 -12.94053 -12.79590 -12.49878 -12.42261 -12.13972 -11.89709 -11.88237 -11.43435 -10.58657 -10.33262 -9.91945 -9.61261 -9.32764 -8.64350 -7.14691 -0.26228 0.18364 0.34556 0.52502 1.18934 1.36567 1.42033 1.61719 1.66006 1.83793 1.93956 2.05850 2.21743 2.48612 2.57415 2.77431 3.25659 3.36071 3.51054 3.65118 3.72652 3.98537 4.14050 4.36040 4.46028 4.48931 4.68659 4.74401 4.78470 4.94505 5.21934 5.37238 5.50470 5.69545 5.77900 5.88264 6.02481 6.17746 6.35502 6.55893 7.09749 7.13384 7.31003 7.62361 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.005702 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.251403 B = 4909.186995 C = 5247.145429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.459 5.459 3 C 0.073 3.927 4 C -0.187 4.187 5 C -0.262 4.262 6 C 0.321 3.679 7 N -0.559 5.559 8 C 0.404 3.596 9 Cl 0.024 6.976 10 N -0.573 5.573 11 C 0.491 3.509 12 N -0.646 5.646 13 C 0.347 3.653 14 C -0.327 4.327 15 H 0.091 0.909 16 C 0.048 3.952 17 N -0.747 5.747 18 Si 0.948 3.052 19 H -0.241 1.241 20 H -0.275 1.275 21 H -0.225 1.225 22 C -0.304 4.304 23 C 0.328 3.672 24 N -0.553 5.553 25 C 0.317 3.683 26 N -0.542 5.542 27 H 0.083 0.917 28 H 0.124 0.876 29 H 0.076 0.924 30 H 0.235 0.765 31 H 0.176 0.824 32 H 0.425 0.575 33 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.393 13.011 3.335 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.146 5.146 3 C -0.050 4.050 4 C -0.212 4.212 5 C -0.276 4.276 6 C 0.083 3.917 7 N -0.287 5.287 8 C 0.107 3.893 9 Cl 0.052 6.948 10 N -0.302 5.302 11 C 0.245 3.755 12 N -0.279 5.279 13 C 0.245 3.755 14 C -0.354 4.354 15 H 0.109 0.891 16 C -0.182 4.182 17 N -0.365 5.365 18 Si 0.767 3.233 19 H -0.165 1.165 20 H -0.201 1.201 21 H -0.148 1.148 22 C -0.322 4.322 23 C 0.021 3.979 24 N -0.236 5.236 25 C 0.011 3.989 26 N -0.225 5.225 27 H 0.101 0.899 28 H 0.142 0.858 29 H 0.095 0.905 30 H 0.252 0.748 31 H 0.193 0.807 32 H 0.267 0.733 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.860 11.574 2.341 20.584 hybrid contribution 0.110 0.447 0.585 0.745 sum -16.750 12.021 2.926 20.824 Atomic orbital electron populations 1.22323 0.73723 1.05970 1.04595 1.44004 1.08055 1.01954 1.60549 1.22728 0.88843 0.91867 1.01605 1.21895 0.98728 0.89703 1.10887 1.20188 0.92977 0.97337 1.17125 1.18016 0.88346 0.86639 0.98746 1.66499 1.36624 1.00143 1.25436 1.21994 0.83613 0.89016 0.94692 1.98391 1.93510 1.06654 1.96228 1.67448 1.19487 1.17633 1.25596 1.17601 0.84251 0.87189 0.86446 1.42004 1.01129 1.09966 1.74756 1.16505 0.84276 0.84445 0.90289 1.19876 1.23220 1.00416 0.91908 0.89101 1.27420 0.90508 1.05580 0.94666 1.69400 1.22367 1.39816 1.04892 0.85695 0.82295 0.76005 0.79261 1.16483 1.20132 1.14780 1.12736 1.05013 1.16577 0.97904 1.24859 0.90916 0.90823 0.91288 1.81059 1.15174 1.16205 1.11185 1.25021 0.91434 0.91223 0.91262 1.80969 1.12239 1.16575 1.12737 0.89858 0.85753 0.90534 0.74833 0.80659 0.73298 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 11.07 127.77 1.41 2.25 16 2 N -0.46 -9.17 3.16 -545.07 -1.72 -10.90 16 3 C 0.07 1.08 11.30 82.97 0.94 2.01 16 4 C -0.19 -3.94 10.98 23.43 0.26 -3.68 16 5 C -0.26 -8.18 5.18 -20.10 -0.10 -8.29 16 6 C 0.32 9.78 7.95 133.97 1.06 10.85 16 7 N -0.56 -19.36 10.43 -188.56 -1.97 -21.33 16 8 C 0.40 15.39 8.15 180.80 1.47 16.87 16 9 Cl 0.02 0.83 29.25 -2.72 -0.08 0.75 16 10 N -0.57 -23.58 9.07 -187.78 -1.70 -25.29 16 11 C 0.49 18.17 5.17 133.33 0.69 18.86 16 12 N -0.65 -23.35 2.23 -183.88 -0.41 -23.76 16 13 C 0.35 14.49 4.97 38.98 0.19 14.69 16 14 C -0.33 -14.76 8.06 23.09 0.19 -14.57 16 15 H 0.09 4.66 7.50 -2.91 -0.02 4.64 16 16 C 0.05 2.01 5.36 85.56 0.46 2.47 16 17 N -0.75 -32.49 13.90 21.99 0.31 -32.19 16 18 Si 0.95 31.35 24.36 68.60 1.67 33.02 16 19 H -0.24 -7.81 5.47 99.48 0.54 -7.27 16 20 H -0.27 -8.83 7.11 99.48 0.71 -8.12 16 21 H -0.23 -6.66 6.60 99.48 0.66 -6.00 16 22 C -0.30 -13.37 5.88 -20.08 -0.12 -13.48 16 23 C 0.33 15.65 14.06 88.33 1.24 16.89 16 24 N -0.55 -27.70 18.54 19.01 0.35 -27.34 16 25 C 0.32 13.88 14.81 88.36 1.31 15.19 16 26 N -0.54 -24.25 18.52 18.97 0.35 -23.90 16 27 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.08 1.09 8.13 -2.39 -0.02 1.07 16 30 H 0.24 0.73 8.06 -2.91 -0.02 0.70 16 31 H 0.18 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.43 13.01 7.77 -92.71 -0.72 12.29 16 33 H 0.31 12.05 8.29 -92.71 -0.77 11.28 16 Total: -1.00 -64.46 325.65 6.10 -58.37 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.29 Total: 12.51 kcal Atomic # 6 Polarization: 51.04 SS G_CDS: 9.00 Total: 60.05 kcal Atomic # 7 Polarization: -159.91 SS G_CDS: -4.79 Total: -164.70 kcal Atomic # 14 Polarization: 31.35 SS G_CDS: 1.67 Total: 33.02 kcal Atomic # 17 Polarization: 0.83 SS G_CDS: -0.08 Total: 0.75 kcal Total: -64.46 6.10 -58.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211484.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.775 kcal (2) G-P(sol) polarization free energy of solvation -64.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds