Wall clock time and date at job start Tue Mar 31 2020 14:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00002 * 2 1 4 4 N 1.46496 * 109.47331 * 124.98266 * 3 2 1 5 5 C 1.46499 * 119.99903 * 85.08174 * 4 3 2 6 6 C 1.50699 * 109.46996 * 90.00277 * 5 4 3 7 7 H 1.08000 * 120.00194 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99877 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00034 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00023 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47221 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47421 * 119.99871 * 10 8 6 13 13 H 1.48499 * 109.47208 * 239.99713 * 10 8 6 14 14 C 1.34778 * 120.00230 * 265.08327 * 4 3 2 15 15 O 1.21616 * 119.99851 * 5.06319 * 14 4 3 16 16 C 1.47370 * 120.00159 * 185.06370 * 14 4 3 17 17 C 1.39790 * 120.19092 * 55.99478 * 16 14 4 18 18 C 1.37684 * 119.96159 * 180.02562 * 17 16 14 19 19 C 1.38766 * 120.34503 * 359.97438 * 18 17 16 20 20 Cl 1.73601 * 119.80757 * 180.02562 * 19 18 17 21 21 C 1.38183 * 120.38487 * 359.97438 * 19 18 17 22 22 Cl 1.73595 * 119.98433 * 180.02562 * 21 19 18 23 23 C 1.38993 * 120.03117 * 359.77059 * 21 19 18 24 24 N 1.38942 * 120.17263 * 180.25248 * 23 21 19 25 25 H 1.08000 * 120.00143 * 185.00837 * 1 2 3 26 26 H 1.07998 * 120.00296 * 5.01805 * 1 2 3 27 27 H 1.08005 * 119.99882 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46929 * 4.98036 * 3 2 1 29 29 H 1.09002 * 109.46826 * 244.98024 * 3 2 1 30 30 H 1.09001 * 109.46754 * 209.99871 * 5 4 3 31 31 H 1.08997 * 109.47275 * 329.99939 * 5 4 3 32 32 H 0.97002 * 120.00385 * 180.02562 * 9 8 6 33 33 H 1.08001 * 120.02271 * 0.02562 * 17 16 14 34 34 H 1.07995 * 119.82836 * 179.97438 * 18 17 16 35 35 H 0.97004 * 119.99837 * 185.37755 * 24 23 21 36 36 H 0.97000 * 120.00230 * 5.36969 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9935 1.3321 1.1316 5 6 4.3221 0.7286 1.0024 6 6 5.2971 1.7628 0.5017 7 1 4.9606 2.7690 0.2995 8 6 6.6185 1.4243 0.3007 9 7 7.0281 0.1990 0.5464 10 14 7.8269 2.7061 -0.3207 11 1 7.1205 3.9973 -0.5191 12 1 8.9148 2.8844 0.6744 13 1 8.4060 2.2557 -1.6118 14 6 2.6268 1.9122 2.2916 15 8 1.4935 2.3310 2.4304 16 6 3.5990 2.0389 3.3918 17 6 4.8186 2.6887 3.1809 18 6 5.7237 2.8040 4.2120 19 6 5.4322 2.2783 5.4627 20 17 6.5834 2.4321 6.7530 21 6 4.2306 1.6340 5.6873 22 17 3.8765 0.9808 7.2562 23 6 3.3031 1.5133 4.6592 24 7 2.0918 0.8707 4.8832 25 1 -0.5400 -0.9317 0.0817 26 1 -0.5400 0.9317 -0.0818 27 1 1.8500 -0.9354 0.0004 28 1 1.3585 2.1316 0.0892 29 1 2.6216 1.4024 -0.9313 30 1 4.6501 0.3607 1.9746 31 1 4.2774 -0.1006 0.2964 32 1 7.9578 -0.0391 0.4054 33 1 5.0507 3.1002 2.2097 34 1 6.6654 3.3061 4.0465 35 1 1.4798 0.7188 4.1461 36 1 1.8582 0.5739 5.7767 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159448180.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:25 Heat of formation + Delta-G solvation = -3.946560 kcal Electronic energy + Delta-G solvation = -23683.915235 eV Core-core repulsion = 20027.093932 eV Total energy + Delta-G solvation = -3656.821303 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.05793 -38.27557 -36.41228 -36.20452 -35.58603 -34.24651 -33.56937 -32.27181 -30.36952 -28.56194 -27.55871 -25.89403 -23.36837 -22.89979 -22.00172 -19.84629 -18.90539 -17.33551 -17.11842 -16.85080 -16.45239 -15.82995 -15.10258 -14.69693 -14.43733 -14.21288 -14.08607 -14.03392 -13.67136 -13.24288 -12.81019 -12.47669 -12.08006 -11.88664 -11.79759 -11.52488 -11.43052 -11.34155 -11.10634 -10.88636 -10.84617 -10.83452 -10.71327 -10.26023 -10.09984 -9.82395 -9.44775 -9.04124 -8.66406 -8.31776 -7.88994 -7.38875 -6.28384 -4.35291 1.19151 1.72719 2.07066 2.41711 2.50557 3.14729 3.17956 3.25736 3.27607 3.84075 3.98221 4.06558 4.24759 5.04102 5.12103 5.23581 5.26497 5.44621 5.50544 5.71258 5.77802 5.86714 6.08503 6.13150 6.24924 6.51311 6.58522 6.74141 6.85606 6.97220 7.03783 7.12708 7.38724 7.49814 7.62817 7.82210 7.93335 8.17365 8.64721 8.82692 9.29858 10.77882 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009326 B = 0.006248 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.532887 B = 4480.565777 C = 6890.423830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.158 4.158 3 C 0.142 3.858 4 N -0.582 5.582 5 C 0.235 3.765 6 C -0.543 4.543 7 H 0.065 0.935 8 C 0.071 3.929 9 N -0.879 5.879 10 Si 0.888 3.112 11 H -0.270 1.270 12 H -0.279 1.279 13 H -0.282 1.282 14 C 0.568 3.432 15 O -0.567 6.567 16 C -0.187 4.187 17 C 0.013 3.987 18 C -0.168 4.168 19 C 0.036 3.964 20 Cl -0.063 7.063 21 C -0.133 4.133 22 Cl -0.066 7.066 23 C 0.281 3.719 24 N -0.855 5.855 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.267 0.733 33 H 0.168 0.832 34 H 0.138 0.862 35 H 0.409 0.591 36 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.479 0.985 6.644 8.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.178 4.178 3 C 0.019 3.981 4 N -0.311 5.311 5 C 0.116 3.884 6 C -0.581 4.581 7 H 0.083 0.917 8 C -0.133 4.133 9 N -0.516 5.516 10 Si 0.715 3.285 11 H -0.194 1.194 12 H -0.205 1.205 13 H -0.208 1.208 14 C 0.356 3.644 15 O -0.448 6.448 16 C -0.195 4.195 17 C -0.006 4.006 18 C -0.188 4.188 19 C 0.008 3.992 20 Cl -0.034 7.034 21 C -0.165 4.165 22 Cl -0.037 7.037 23 C 0.170 3.830 24 N -0.394 5.394 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.185 0.815 34 H 0.156 0.844 35 H 0.240 0.760 36 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -5.798 1.011 6.928 9.090 hybrid contribution 0.765 0.110 -0.086 0.778 sum -5.032 1.121 6.841 8.566 Atomic orbital electron populations 1.23740 0.95833 1.01440 1.01665 1.23395 0.96100 0.99416 0.98851 1.20419 0.92397 0.95003 0.90240 1.48181 1.17147 1.54958 1.10816 1.19508 0.76445 0.93867 0.98624 1.21451 0.93474 0.97185 1.45955 0.91686 1.24910 0.98176 0.95409 0.94839 1.69919 1.17044 1.17857 1.46800 0.86587 0.81304 0.81713 0.78900 1.19400 1.20487 1.20766 1.17941 0.86339 0.77634 0.82495 1.90709 1.20665 1.51178 1.82289 1.19267 0.98413 1.09527 0.92289 1.21828 0.88440 0.91048 0.99278 1.20707 1.01943 1.05861 0.90335 1.20612 0.89310 0.98890 0.90357 1.98354 1.58999 1.96402 1.49626 1.19713 0.96609 1.12557 0.87638 1.98310 1.94759 1.85324 1.25339 1.17010 0.85580 0.89776 0.90632 1.42435 1.18407 1.64734 1.13794 0.88961 0.88657 0.87449 0.90204 0.89517 0.94113 0.94476 0.92362 0.81468 0.84369 0.76039 0.77119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 14.31 29.01 0.42 -2.13 16 2 C -0.16 -2.43 9.84 -36.03 -0.35 -2.78 16 3 C 0.14 2.44 5.87 -5.20 -0.03 2.41 16 4 N -0.58 -11.39 2.44 -177.73 -0.43 -11.82 16 5 C 0.24 5.19 4.75 -5.19 -0.02 5.17 16 6 C -0.54 -12.63 6.47 -34.44 -0.22 -12.85 16 7 H 0.07 1.51 7.21 -52.49 -0.38 1.13 16 8 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 9 N -0.88 -22.76 13.29 55.43 0.74 -22.03 16 10 Si 0.89 18.97 29.54 -169.99 -5.02 13.95 16 11 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 C 0.57 11.25 6.34 -12.54 -0.08 11.17 16 15 O -0.57 -11.85 15.62 5.26 0.08 -11.76 16 16 C -0.19 -3.54 4.44 -104.81 -0.47 -4.01 16 17 C 0.01 0.25 7.87 -39.20 -0.31 -0.06 16 18 C -0.17 -2.89 9.80 -39.59 -0.39 -3.27 16 19 C 0.04 0.61 6.32 -39.41 -0.25 0.36 16 20 Cl -0.06 -0.93 27.92 -51.86 -1.45 -2.38 16 21 C -0.13 -2.19 6.33 -39.32 -0.25 -2.44 16 22 Cl -0.07 -0.93 26.57 -51.86 -1.38 -2.31 16 23 C 0.28 4.85 6.75 -83.56 -0.56 4.29 16 24 N -0.85 -12.79 8.87 32.57 0.29 -12.50 16 25 H 0.09 1.08 8.06 -52.49 -0.42 0.65 16 26 H 0.10 1.25 7.86 -52.49 -0.41 0.83 16 27 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 28 H 0.08 1.36 7.01 -51.93 -0.36 1.00 16 29 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 30 H 0.04 0.98 6.75 -51.93 -0.35 0.63 16 31 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 33 H 0.17 3.30 5.19 -52.49 -0.27 3.03 16 34 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.41 6.30 7.04 -40.82 -0.29 6.02 16 36 H 0.40 5.08 7.51 -40.82 -0.31 4.77 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -25.69 337.36 -8.32 -34.01 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -3.62 Total: 12.27 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.62 Total: -2.51 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.59 Total: -46.35 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.95 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -2.83 Total: -4.69 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -25.69 -8.32 -34.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159448180.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.066 kcal (2) G-P(sol) polarization free energy of solvation -25.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds