Wall clock time and date at job start Tue Mar 31 2020 14:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00002 * 2 1 4 4 N 1.46496 * 109.47331 * 124.98266 * 3 2 1 5 5 C 1.46499 * 119.99903 * 85.08174 * 4 3 2 6 6 C 1.50699 * 109.46996 * 90.00277 * 5 4 3 7 7 H 1.08000 * 120.00194 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99877 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00034 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00023 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47221 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47421 * 119.99871 * 10 8 6 13 13 H 1.48499 * 109.47208 * 239.99713 * 10 8 6 14 14 C 1.34778 * 120.00230 * 265.08327 * 4 3 2 15 15 O 1.21616 * 119.99851 * 5.06319 * 14 4 3 16 16 C 1.47370 * 120.00159 * 185.06370 * 14 4 3 17 17 C 1.39790 * 120.19092 * 55.99478 * 16 14 4 18 18 C 1.37684 * 119.96159 * 180.02562 * 17 16 14 19 19 C 1.38766 * 120.34503 * 359.97438 * 18 17 16 20 20 Cl 1.73601 * 119.80757 * 180.02562 * 19 18 17 21 21 C 1.38183 * 120.38487 * 359.97438 * 19 18 17 22 22 Cl 1.73595 * 119.98433 * 180.02562 * 21 19 18 23 23 C 1.38993 * 120.03117 * 359.77059 * 21 19 18 24 24 N 1.38942 * 120.17263 * 180.25248 * 23 21 19 25 25 H 1.08000 * 120.00143 * 185.00837 * 1 2 3 26 26 H 1.07998 * 120.00296 * 5.01805 * 1 2 3 27 27 H 1.08005 * 119.99882 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46929 * 4.98036 * 3 2 1 29 29 H 1.09002 * 109.46826 * 244.98024 * 3 2 1 30 30 H 1.09001 * 109.46754 * 209.99871 * 5 4 3 31 31 H 1.08997 * 109.47275 * 329.99939 * 5 4 3 32 32 H 0.97002 * 120.00385 * 180.02562 * 9 8 6 33 33 H 1.08001 * 120.02271 * 0.02562 * 17 16 14 34 34 H 1.07995 * 119.82836 * 179.97438 * 18 17 16 35 35 H 0.97004 * 119.99837 * 185.37755 * 24 23 21 36 36 H 0.97000 * 120.00230 * 5.36969 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9935 1.3321 1.1316 5 6 4.3221 0.7286 1.0024 6 6 5.2971 1.7628 0.5017 7 1 4.9606 2.7690 0.2995 8 6 6.6185 1.4243 0.3007 9 7 7.0281 0.1990 0.5464 10 14 7.8269 2.7061 -0.3207 11 1 7.1205 3.9973 -0.5191 12 1 8.9148 2.8844 0.6744 13 1 8.4060 2.2557 -1.6118 14 6 2.6268 1.9122 2.2916 15 8 1.4935 2.3310 2.4304 16 6 3.5990 2.0389 3.3918 17 6 4.8186 2.6887 3.1809 18 6 5.7237 2.8040 4.2120 19 6 5.4322 2.2783 5.4627 20 17 6.5834 2.4321 6.7530 21 6 4.2306 1.6340 5.6873 22 17 3.8765 0.9808 7.2562 23 6 3.3031 1.5133 4.6592 24 7 2.0918 0.8707 4.8832 25 1 -0.5400 -0.9317 0.0817 26 1 -0.5400 0.9317 -0.0818 27 1 1.8500 -0.9354 0.0004 28 1 1.3585 2.1316 0.0892 29 1 2.6216 1.4024 -0.9313 30 1 4.6501 0.3607 1.9746 31 1 4.2774 -0.1006 0.2964 32 1 7.9578 -0.0391 0.4054 33 1 5.0507 3.1002 2.2097 34 1 6.6654 3.3061 4.0465 35 1 1.4798 0.7188 4.1461 36 1 1.8582 0.5739 5.7767 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159448180.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:24 Heat of formation + Delta-G solvation = -16.551652 kcal Electronic energy + Delta-G solvation = -23684.461832 eV Core-core repulsion = 20027.093932 eV Total energy + Delta-G solvation = -3657.367900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51552 -39.69465 -37.67814 -37.45501 -37.12362 -35.55019 -35.11207 -33.89628 -31.73305 -29.90055 -29.30339 -27.29606 -25.07097 -24.36475 -23.37579 -21.12306 -20.33493 -18.75105 -18.59753 -18.39238 -17.99478 -17.35059 -16.58453 -16.21779 -15.89340 -15.50513 -15.46209 -15.41711 -15.00662 -14.71975 -14.24666 -14.11782 -13.58213 -13.42215 -13.12201 -13.02279 -12.84938 -12.73226 -12.65503 -12.49855 -12.19178 -12.11782 -11.98508 -11.87506 -11.59702 -11.44371 -10.94960 -10.55702 -10.26705 -9.68499 -9.50151 -8.69620 -8.15048 -6.26776 -0.19220 0.36667 0.79438 1.12848 1.30370 1.44918 1.50488 1.58251 1.67741 2.36489 2.46221 2.65629 2.71879 3.17275 3.63813 3.89690 4.02568 4.11659 4.24931 4.36808 4.41789 4.55500 4.75792 4.82517 4.88239 5.04635 5.12566 5.26035 5.35323 5.56973 5.67647 5.70143 5.78065 5.88232 6.08536 6.19033 6.50485 6.66745 6.83146 7.23030 7.42725 8.91008 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009326 B = 0.006248 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.532887 B = 4480.565777 C = 6890.423830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.183 4.183 3 C 0.141 3.859 4 N -0.583 5.583 5 C 0.255 3.745 6 C -0.536 4.536 7 H 0.064 0.936 8 C 0.032 3.968 9 N -0.913 5.913 10 Si 0.942 3.058 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.285 1.285 14 C 0.568 3.432 15 O -0.580 6.580 16 C -0.209 4.209 17 C 0.003 3.997 18 C -0.173 4.173 19 C 0.035 3.965 20 Cl -0.044 7.044 21 C -0.136 4.136 22 Cl -0.043 7.043 23 C 0.278 3.722 24 N -0.844 5.844 25 H 0.116 0.884 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.021 0.979 31 H 0.020 0.980 32 H 0.266 0.734 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.408 0.592 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.946 1.276 7.449 9.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C 0.019 3.981 4 N -0.312 5.312 5 C 0.134 3.866 6 C -0.574 4.574 7 H 0.082 0.918 8 C -0.169 4.169 9 N -0.552 5.552 10 Si 0.768 3.232 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.211 1.211 14 C 0.358 3.642 15 O -0.463 6.463 16 C -0.217 4.217 17 C -0.016 4.016 18 C -0.194 4.194 19 C 0.007 3.993 20 Cl -0.014 7.014 21 C -0.169 4.169 22 Cl -0.014 7.014 23 C 0.166 3.834 24 N -0.383 5.383 25 H 0.134 0.866 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.171 0.829 34 H 0.169 0.831 35 H 0.238 0.762 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.294 1.305 7.743 10.063 hybrid contribution 0.821 0.002 -0.243 0.857 sum -5.473 1.307 7.499 9.376 Atomic orbital electron populations 1.23969 0.95068 1.02810 0.98256 1.23217 0.96766 0.98191 1.01989 1.20516 0.92096 0.96260 0.89260 1.48147 1.16658 1.54729 1.11616 1.19084 0.77530 0.93149 0.96836 1.21571 0.93699 0.97165 1.44960 0.91842 1.25507 0.99610 0.96708 0.95088 1.70017 1.17293 1.19471 1.48419 0.85736 0.79447 0.79976 0.78059 1.18671 1.20268 1.21140 1.18069 0.86335 0.77209 0.82634 1.90683 1.21216 1.51837 1.82536 1.19302 0.98633 1.10934 0.92856 1.21691 0.89036 0.91667 0.99250 1.20822 1.02119 1.06066 0.90343 1.20701 0.89703 0.98227 0.90695 1.98359 1.58254 1.96259 1.48564 1.19805 0.96368 1.12190 0.88552 1.98316 1.94630 1.84933 1.23547 1.17054 0.86362 0.89657 0.90286 1.42391 1.17565 1.63948 1.14413 0.86624 0.88066 0.87889 0.90136 0.89812 0.96055 0.96174 0.92476 0.82899 0.83096 0.76173 0.75790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 14.31 67.78 0.97 -3.11 16 2 C -0.18 -5.49 9.84 25.65 0.25 -5.24 16 3 C 0.14 4.85 5.87 85.63 0.50 5.35 16 4 N -0.58 -23.12 2.44 -834.46 -2.04 -25.16 16 5 C 0.25 11.52 4.75 85.63 0.41 11.92 16 6 C -0.54 -25.23 6.47 25.60 0.17 -25.07 16 7 H 0.06 2.97 7.21 -2.91 -0.02 2.95 16 8 C 0.03 1.58 5.46 84.66 0.46 2.04 16 9 N -0.91 -47.87 13.29 21.45 0.28 -47.59 16 10 Si 0.94 38.84 29.54 68.60 2.03 40.86 16 11 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 12 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 13 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16 14 C 0.57 22.64 6.34 86.65 0.55 23.19 16 15 O -0.58 -24.06 15.62 -4.08 -0.06 -24.13 16 16 C -0.21 -7.95 4.44 -19.98 -0.09 -8.04 16 17 C 0.00 0.11 7.87 22.51 0.18 0.28 16 18 C -0.17 -5.86 9.80 22.26 0.22 -5.64 16 19 C 0.04 1.13 6.32 22.38 0.14 1.27 16 20 Cl -0.04 -1.21 27.92 -2.72 -0.08 -1.28 16 21 C -0.14 -4.34 6.33 22.44 0.14 -4.20 16 22 Cl -0.04 -1.13 26.57 -2.72 -0.07 -1.20 16 23 C 0.28 9.43 6.75 38.71 0.26 9.69 16 24 N -0.84 -24.36 8.87 -50.88 -0.45 -24.81 16 25 H 0.12 2.36 8.06 -2.91 -0.02 2.34 16 26 H 0.10 2.42 7.86 -2.91 -0.02 2.40 16 27 H 0.10 3.18 8.06 -2.91 -0.02 3.15 16 28 H 0.08 2.73 7.01 -2.39 -0.02 2.72 16 29 H 0.08 2.86 8.11 -2.39 -0.02 2.85 16 30 H 0.02 1.05 6.75 -2.39 -0.02 1.04 16 31 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 32 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 33 H 0.15 6.15 5.19 -2.91 -0.02 6.14 16 34 H 0.15 4.60 8.06 -2.91 -0.02 4.57 16 35 H 0.41 12.22 7.04 -92.71 -0.65 11.57 16 36 H 0.41 9.78 7.51 -92.71 -0.70 9.08 16 Total: -1.00 -53.53 337.36 3.57 -49.96 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.20 Total: 30.88 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 4.16 Total: 2.46 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -2.20 Total: -97.55 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.06 Total: -24.13 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.86 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -0.15 Total: -2.49 kcal Total: -53.53 3.57 -49.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159448180.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.407 kcal (2) G-P(sol) polarization free energy of solvation -53.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds