Wall clock time and date at job start Tue Mar 31 2020 14:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50698 * 120.00081 * 2 1 4 4 N 1.46501 * 109.47452 * 125.00179 * 3 2 1 5 5 C 1.46497 * 119.99838 * 264.46780 * 4 3 2 6 6 C 1.50707 * 109.46981 * 270.00204 * 5 4 3 7 7 H 1.07993 * 119.99867 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99574 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00652 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99404 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47259 * 59.99722 * 10 8 6 12 12 H 1.48503 * 109.47003 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47158 * 299.99751 * 10 8 6 14 14 C 1.34778 * 120.00138 * 84.46550 * 4 3 2 15 15 O 1.21603 * 119.99692 * 185.91207 * 14 4 3 16 16 C 1.47432 * 119.99737 * 5.91270 * 14 4 3 17 17 C 1.39773 * 120.20112 * 54.36161 * 16 14 4 18 18 C 1.37822 * 119.93771 * 180.02562 * 17 16 14 19 19 Cl 1.73599 * 119.83470 * 179.97438 * 18 17 16 20 20 C 1.38712 * 120.33463 * 0.02562 * 18 17 16 21 21 C 1.38032 * 120.39875 * 359.71620 * 20 18 17 22 22 Cl 1.73594 * 119.97698 * 180.30719 * 21 20 18 23 23 C 1.39060 * 120.05489 * 0.55899 * 21 20 18 24 24 N 1.38991 * 120.16558 * 179.71948 * 23 21 20 25 25 H 1.07998 * 120.00357 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.00137 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.99916 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46938 * 4.99352 * 3 2 1 29 29 H 1.09004 * 109.47111 * 245.00358 * 3 2 1 30 30 H 1.09005 * 109.46977 * 29.99569 * 5 4 3 31 31 H 1.08991 * 109.47336 * 149.99763 * 5 4 3 32 32 H 0.96996 * 120.00531 * 180.02562 * 9 8 6 33 33 H 1.07999 * 120.02845 * 359.97438 * 17 16 14 34 34 H 1.08000 * 119.79981 * 179.97438 * 20 18 17 35 35 H 0.97003 * 120.00121 * 174.67314 * 24 23 21 36 36 H 0.97001 * 120.00192 * 354.66900 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6005 1.9741 2.3880 6 6 2.9952 3.4282 2.3541 7 1 3.4899 3.8332 1.4837 8 6 2.7257 4.2410 3.4346 9 7 2.1236 3.7477 4.4947 10 14 3.2156 6.0432 3.3928 11 1 2.5325 6.7157 2.2586 12 1 2.8169 6.6942 4.6665 13 1 4.6865 6.1524 3.2198 14 6 4.2114 0.7658 1.0162 15 8 4.9420 0.6924 1.9856 16 6 4.6576 0.2354 -0.2851 17 6 4.6446 1.0524 -1.4191 18 6 5.0623 0.5509 -2.6330 19 17 5.0444 1.5677 -4.0399 20 6 5.4961 -0.7626 -2.7364 21 6 5.5198 -1.5800 -1.6244 22 17 6.0723 -3.2197 -1.7648 23 6 5.0965 -1.0927 -0.3927 24 7 5.1138 -1.9155 0.7274 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3585 2.1316 0.0895 29 1 2.6212 1.4026 -0.9314 30 1 1.5208 1.8937 2.5148 31 1 3.1018 1.4808 3.2206 32 1 1.9337 4.3196 5.2547 33 1 4.3066 2.0754 -1.3444 34 1 5.8212 -1.1468 -3.6920 35 1 4.8921 -1.5527 1.5992 36 1 5.3476 -2.8526 0.6372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159449393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:28 Heat of formation + Delta-G solvation = -0.792734 kcal Electronic energy + Delta-G solvation = -23344.214323 eV Core-core repulsion = 19687.529780 eV Total energy + Delta-G solvation = -3656.684543 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.37433 -38.37738 -36.88281 -36.33445 -35.82095 -34.45654 -33.26883 -32.20768 -31.17968 -28.73128 -27.56546 -25.69046 -24.19587 -22.83529 -22.04959 -20.05556 -19.12781 -17.59483 -17.28963 -16.98231 -16.48682 -15.79419 -15.45000 -14.88612 -14.78006 -14.48522 -14.29903 -14.04756 -13.99377 -13.04282 -12.91465 -12.64543 -12.52336 -12.22694 -11.96927 -11.72543 -11.60731 -11.35375 -11.30795 -11.08563 -11.00794 -10.95250 -10.63857 -10.34255 -10.24760 -9.72696 -9.27925 -9.24453 -8.89885 -8.47797 -7.83176 -7.66012 -6.09669 -4.15273 0.80733 1.13369 1.76171 2.22568 2.42365 3.03603 3.29532 3.34137 3.37266 3.54382 3.67045 3.86291 4.39497 4.56865 4.84233 4.91534 5.17680 5.18444 5.24862 5.37225 5.42739 5.57953 5.66216 5.82337 5.98447 6.01200 6.14611 6.27234 6.77298 6.86011 6.99206 7.16906 7.33872 7.43483 7.57728 7.85693 8.15131 8.24114 8.75284 8.92697 9.50195 10.98286 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.004062 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.072852 B = 6891.356833 C = 7454.523854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.164 4.164 3 C 0.127 3.873 4 N -0.580 5.580 5 C 0.246 3.754 6 C -0.531 4.531 7 H 0.058 0.942 8 C 0.064 3.936 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.559 3.441 15 O -0.535 6.535 16 C -0.175 4.175 17 C -0.023 4.023 18 C -0.091 4.091 19 Cl -0.067 7.067 20 C -0.038 4.038 21 C -0.116 4.116 22 Cl -0.064 7.064 23 C 0.278 3.722 24 N -0.850 5.850 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.265 0.735 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.415 0.585 36 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -11.739 -15.339 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.183 4.183 3 C 0.004 3.996 4 N -0.310 5.310 5 C 0.128 3.872 6 C -0.570 4.570 7 H 0.076 0.924 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.345 3.655 15 O -0.414 6.414 16 C -0.184 4.184 17 C -0.043 4.043 18 C -0.120 4.120 19 Cl -0.039 7.039 20 C -0.058 4.058 21 C -0.147 4.147 22 Cl -0.035 7.035 23 C 0.166 3.834 24 N -0.388 5.388 25 H 0.118 0.882 26 H 0.112 0.888 27 H 0.120 0.880 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.248 0.752 36 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 2.695 -11.753 -14.699 19.012 hybrid contribution 0.257 0.706 0.131 0.762 sum 2.952 -11.047 -14.568 18.519 Atomic orbital electron populations 1.23804 0.95768 1.01765 1.00704 1.23351 0.96315 0.98856 0.99775 1.20811 0.93057 0.95565 0.90173 1.48188 1.12736 1.54177 1.15864 1.19364 0.96024 0.92177 0.79670 1.21376 1.39380 0.94048 1.02186 0.92383 1.24913 0.94932 0.98920 0.95092 1.69915 1.41368 1.36262 1.05605 0.86567 0.79171 0.84464 0.77298 1.20153 1.21156 1.20116 1.17753 0.82379 0.78677 0.86688 1.90780 1.53899 1.57847 1.38827 1.19494 1.10173 0.93067 0.95667 1.21052 0.93938 1.00150 0.89148 1.20169 1.10822 0.92173 0.88875 1.98359 1.97594 1.67951 1.39973 1.20658 0.96215 0.91103 0.97854 1.19939 1.13074 0.88022 0.93710 1.98340 1.88569 1.18712 1.97886 1.17293 0.90232 0.89319 0.86567 1.42687 1.75750 1.11955 1.08408 0.88226 0.88798 0.88037 0.89072 0.90227 0.94697 0.93605 0.92584 0.83570 0.83941 0.75206 0.76836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 14.32 29.02 0.42 -1.92 16 2 C -0.16 -2.33 9.80 -36.03 -0.35 -2.68 16 3 C 0.13 2.04 5.61 -5.19 -0.03 2.02 16 4 N -0.58 -11.69 2.45 -177.70 -0.44 -12.12 16 5 C 0.25 6.16 5.18 -5.19 -0.03 6.14 16 6 C -0.53 -14.48 9.39 -34.44 -0.32 -14.80 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 10 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.56 11.12 6.44 -12.52 -0.08 11.04 16 15 O -0.54 -12.61 15.35 5.27 0.08 -12.52 16 16 C -0.17 -2.76 4.99 -104.81 -0.52 -3.28 16 17 C -0.02 -0.32 7.37 -39.16 -0.29 -0.61 16 18 C -0.09 -1.11 6.31 -39.56 -0.25 -1.36 16 19 Cl -0.07 -0.75 28.94 -51.86 -1.50 -2.25 16 20 C -0.04 -0.43 9.58 -39.48 -0.38 -0.80 16 21 C -0.12 -1.38 6.33 -39.35 -0.25 -1.63 16 22 Cl -0.06 -0.64 27.59 -51.86 -1.43 -2.08 16 23 C 0.28 3.85 6.75 -83.54 -0.56 3.29 16 24 N -0.85 -10.86 8.90 32.58 0.29 -10.57 16 25 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 26 H 0.09 1.04 8.06 -52.48 -0.42 0.61 16 27 H 0.10 1.42 8.06 -52.48 -0.42 1.00 16 28 H 0.09 1.50 7.68 -51.93 -0.40 1.10 16 29 H 0.08 1.13 4.49 -51.93 -0.23 0.90 16 30 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.05 1.29 7.35 -51.93 -0.38 0.91 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.15 2.05 7.33 -52.49 -0.38 1.66 16 34 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.42 6.03 6.82 -40.82 -0.28 5.75 16 36 H 0.40 4.15 7.51 -40.82 -0.31 3.84 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -30.07 342.30 -8.50 -38.57 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -3.63 Total: 7.53 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.75 Total: -2.94 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.59 Total: -47.80 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.08 Total: -12.52 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -2.93 Total: -4.33 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.07 -8.50 -38.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159449393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.776 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds