Wall clock time and date at job start Tue Mar 31 2020 15:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99869 * 2 1 4 4 C 1.46897 * 111.00156 * 123.95757 * 2 1 3 5 5 C 1.52995 * 109.47080 * 66.04421 * 4 2 1 6 6 N 1.46505 * 109.46834 * 180.02562 * 5 4 2 7 7 C 1.39782 * 119.99927 * 180.02562 * 6 5 4 8 8 C 1.38741 * 120.09729 * 0.02562 * 7 6 5 9 9 C 1.38285 * 119.97755 * 179.97438 * 8 7 6 10 10 Br 1.89101 * 119.90187 * 180.02562 * 9 8 7 11 11 C 1.38427 * 120.18903 * 0.02562 * 9 8 7 12 12 C 1.38172 * 120.19504 * 359.68409 * 11 9 8 13 13 C 1.38715 * 120.01375 * 0.59335 * 12 11 9 14 14 O 1.35812 * 120.09006 * 179.70256 * 13 12 11 15 15 C 1.34791 * 116.99830 * 354.39805 * 14 13 12 16 16 H 1.07998 * 120.00101 * 5.06954 * 15 14 13 17 17 C 1.38630 * 119.99700 * 185.06004 * 15 14 13 18 18 N 1.31578 * 119.99977 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99891 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47057 * 90.00596 * 19 17 15 21 21 H 1.48493 * 109.47575 * 210.00286 * 19 17 15 22 22 H 1.48496 * 109.47338 * 330.00612 * 19 17 15 23 23 H 1.08997 * 109.46674 * 296.04422 * 1 2 3 24 24 H 1.09000 * 109.46800 * 56.04486 * 1 2 3 25 25 H 1.08994 * 109.46796 * 176.04194 * 1 2 3 26 26 H 1.08999 * 109.47133 * 183.95778 * 3 2 1 27 27 H 1.09006 * 109.47205 * 303.95389 * 3 2 1 28 28 H 1.08997 * 109.46846 * 63.95297 * 3 2 1 29 29 H 1.09006 * 109.46703 * 306.04887 * 4 2 1 30 30 H 1.08999 * 109.47168 * 186.04782 * 4 2 1 31 31 H 1.08996 * 109.47526 * 60.00610 * 5 4 2 32 32 H 1.09007 * 109.47222 * 299.99961 * 5 4 2 33 33 H 0.97000 * 120.00371 * 359.97438 * 6 5 4 34 34 H 1.07993 * 120.00696 * 359.95650 * 8 7 6 35 35 H 1.07998 * 119.90093 * 179.97438 * 11 9 8 36 36 H 1.07995 * 119.99542 * 180.29853 * 12 11 9 37 37 H 0.97000 * 119.99670 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9702 6 7 2.1561 -3.0064 2.1050 7 6 1.9481 -4.3870 2.1742 8 6 1.2456 -5.0360 1.1691 9 6 1.0418 -6.4019 1.2398 10 35 0.0846 -7.2844 -0.1317 11 6 1.5363 -7.1249 2.3116 12 6 2.2421 -6.4871 3.3137 13 6 2.4465 -5.1164 3.2541 14 8 3.1348 -4.4870 4.2413 15 6 3.4923 -5.2301 5.3075 16 1 3.3028 -6.2933 5.3128 17 6 4.1036 -4.6295 6.3973 18 7 4.3343 -3.3341 6.3909 19 14 4.5985 -5.6591 7.8752 20 1 5.9843 -6.1592 7.6884 21 1 4.5342 -4.8261 9.1028 22 1 3.6707 -6.8107 8.0093 23 1 -0.3632 0.4512 0.9233 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 3.0828 1.3433 -0.0709 27 1 1.5898 1.9164 -0.8525 28 1 1.7044 1.8723 0.9233 29 1 1.5611 -0.3873 2.0627 30 1 3.0798 -0.6611 1.1755 31 1 2.0659 -2.6214 0.0450 32 1 0.5472 -2.3475 0.9322 33 1 2.6484 -2.5543 2.8079 34 1 0.8580 -4.4745 0.3320 35 1 1.3740 -8.1914 2.3623 36 1 2.6306 -7.0551 4.1460 37 1 4.7616 -2.9139 7.1536 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161668353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:34 Heat of formation + Delta-G solvation = 10.325026 kcal Electronic energy + Delta-G solvation = -19727.346376 eV Core-core repulsion = 16551.840180 eV Total energy + Delta-G solvation = -3175.506196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.35281 -37.85129 -36.60722 -34.83645 -32.39071 -30.89484 -30.18219 -28.27746 -27.70962 -27.00349 -25.34515 -23.96833 -21.78798 -20.97601 -20.62595 -18.03014 -17.38665 -15.97646 -15.70997 -15.67136 -14.87164 -14.60905 -14.50126 -14.23284 -13.97213 -13.61491 -13.32240 -13.18435 -12.65889 -12.49343 -12.13666 -11.90112 -11.83970 -11.77852 -11.45877 -11.19502 -11.09696 -11.02491 -10.73990 -10.47689 -10.13966 -9.79735 -9.48708 -9.26236 -8.84124 -8.51013 -7.67950 -6.54508 -6.51128 -4.06546 2.05501 2.25131 2.33689 3.09120 3.10852 3.15207 3.57722 3.90804 4.34537 4.46003 4.91062 4.99639 5.03411 5.11100 5.15391 5.25818 5.42484 5.50900 5.56752 5.68928 5.72225 5.77125 5.79974 5.99368 6.06616 6.11396 6.40207 6.49466 6.63362 6.86248 6.87042 6.94053 7.16476 7.22460 7.49872 7.87337 7.99241 8.38231 8.94209 9.61033 10.65424 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.007114 B = 0.005283 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3934.902254 B = 5298.813397 C = 9116.413280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.544 5.544 3 C 0.025 3.975 4 C 0.044 3.956 5 C 0.136 3.864 6 N -0.745 5.745 7 C 0.165 3.835 8 C -0.141 4.141 9 C -0.128 4.128 10 Br -0.092 7.092 11 C -0.089 4.089 12 C -0.204 4.204 13 C 0.111 3.889 14 O -0.177 6.177 15 C -0.385 4.385 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.267 1.267 23 H 0.026 0.974 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.409 0.591 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.135 0.865 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.857 1.494 -11.148 13.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.269 5.269 3 C -0.123 4.123 4 C -0.084 4.084 5 C 0.011 3.989 6 N -0.380 5.380 7 C 0.063 3.937 8 C -0.166 4.166 9 C -0.208 4.208 10 Br -0.008 7.008 11 C -0.110 4.110 12 C -0.226 4.226 13 C 0.056 3.944 14 O -0.081 6.081 15 C -0.461 4.461 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.191 1.191 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.244 0.756 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.152 0.848 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.947 1.438 -12.050 13.984 hybrid contribution 0.344 0.213 2.065 2.104 sum -6.604 1.651 -9.985 12.085 Atomic orbital electron populations 1.22487 0.87325 1.02727 1.00425 1.61885 1.08131 1.13856 1.42982 1.22381 1.00940 0.88548 1.00446 1.22256 1.01001 0.93515 0.91677 1.21071 0.98014 0.89757 0.90056 1.44185 1.63617 1.04012 1.26199 1.16870 0.99297 0.83638 0.93888 1.19962 1.04816 0.92588 0.99270 1.20767 1.09149 0.94239 0.96644 1.96469 1.74903 1.78988 1.50423 1.20482 0.98754 0.98665 0.93130 1.20857 1.06349 0.93780 1.01575 1.18998 0.94262 0.91077 0.90110 1.83872 1.61417 1.37326 1.25515 1.21301 1.39560 0.92389 0.92887 0.89003 1.25256 0.96726 0.96246 0.98236 1.70021 1.39541 1.09230 1.31050 0.85709 0.79208 0.78985 0.79564 1.19877 1.20311 1.19137 0.95505 0.91435 0.90812 0.91197 0.91347 0.95568 0.93974 0.89981 0.92065 0.93030 0.75552 0.86131 0.86789 0.84763 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.32 60.07 0.56 0.75 16 2 N -0.54 -6.31 5.02 -251.26 -1.26 -7.57 16 3 C 0.03 0.24 9.57 60.07 0.57 0.82 16 4 C 0.04 0.57 5.07 -3.83 -0.02 0.55 16 5 C 0.14 2.00 4.84 -4.04 -0.02 1.98 16 6 N -0.75 -13.67 5.73 -58.48 -0.33 -14.01 16 7 C 0.17 3.37 6.67 -83.57 -0.56 2.82 16 8 C -0.14 -2.60 9.05 -39.38 -0.36 -2.95 16 9 C -0.13 -2.33 6.22 -39.49 -0.25 -2.57 16 10 Br -0.09 -1.41 33.69 -68.01 -2.29 -3.70 16 11 C -0.09 -1.66 9.77 -39.54 -0.39 -2.05 16 12 C -0.20 -4.32 9.16 -39.43 -0.36 -4.68 16 13 C 0.11 2.57 6.67 -38.93 -0.26 2.31 16 14 O -0.18 -4.71 9.00 -0.03 0.00 -4.71 16 15 C -0.39 -10.25 9.49 30.88 0.29 -9.96 16 16 H 0.09 2.28 5.21 -52.49 -0.27 2.00 16 17 C 0.04 1.04 5.49 -17.52 -0.10 0.94 16 18 N -0.86 -24.08 13.67 55.48 0.76 -23.32 16 19 Si 0.94 19.91 29.55 -169.99 -5.02 14.89 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 25 H 0.07 0.76 6.47 -51.93 -0.34 0.43 16 26 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 27 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 28 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 31 H 0.06 0.91 7.95 -51.93 -0.41 0.50 16 32 H 0.05 0.73 6.36 -51.92 -0.33 0.40 16 33 H 0.41 8.08 7.84 -40.82 -0.32 7.76 16 34 H 0.12 2.01 6.73 -52.49 -0.35 1.66 16 35 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 37 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 328.71 15.07 4.95 4.95 Total: -1.00 -27.98 328.71 -8.90 -36.89 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.83 Total: 8.64 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -0.87 Total: -12.06 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -0.84 Total: -44.90 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: 0.00 Total: -4.71 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 35 Polarization: -1.41 SS G_CDS: -2.29 Total: -3.70 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.98 -8.90 -36.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161668353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.212 kcal (2) G-P(sol) polarization free energy of solvation -27.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds