Wall clock time and date at job start Tue Mar 31 2020 15:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99869 * 2 1 4 4 C 1.46897 * 111.00156 * 123.95757 * 2 1 3 5 5 C 1.52995 * 109.47080 * 66.04421 * 4 2 1 6 6 N 1.46505 * 109.46834 * 180.02562 * 5 4 2 7 7 C 1.39782 * 119.99927 * 180.02562 * 6 5 4 8 8 C 1.38741 * 120.09729 * 0.02562 * 7 6 5 9 9 C 1.38285 * 119.97755 * 179.97438 * 8 7 6 10 10 Br 1.89101 * 119.90187 * 180.02562 * 9 8 7 11 11 C 1.38427 * 120.18903 * 0.02562 * 9 8 7 12 12 C 1.38172 * 120.19504 * 359.68409 * 11 9 8 13 13 C 1.38715 * 120.01375 * 0.59335 * 12 11 9 14 14 O 1.35812 * 120.09006 * 179.70256 * 13 12 11 15 15 C 1.34791 * 116.99830 * 354.39805 * 14 13 12 16 16 H 1.07998 * 120.00101 * 5.06954 * 15 14 13 17 17 C 1.38630 * 119.99700 * 185.06004 * 15 14 13 18 18 N 1.31578 * 119.99977 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99891 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47057 * 90.00596 * 19 17 15 21 21 H 1.48493 * 109.47575 * 210.00286 * 19 17 15 22 22 H 1.48496 * 109.47338 * 330.00612 * 19 17 15 23 23 H 1.08997 * 109.46674 * 296.04422 * 1 2 3 24 24 H 1.09000 * 109.46800 * 56.04486 * 1 2 3 25 25 H 1.08994 * 109.46796 * 176.04194 * 1 2 3 26 26 H 1.08999 * 109.47133 * 183.95778 * 3 2 1 27 27 H 1.09006 * 109.47205 * 303.95389 * 3 2 1 28 28 H 1.08997 * 109.46846 * 63.95297 * 3 2 1 29 29 H 1.09006 * 109.46703 * 306.04887 * 4 2 1 30 30 H 1.08999 * 109.47168 * 186.04782 * 4 2 1 31 31 H 1.08996 * 109.47526 * 60.00610 * 5 4 2 32 32 H 1.09007 * 109.47222 * 299.99961 * 5 4 2 33 33 H 0.97000 * 120.00371 * 359.97438 * 6 5 4 34 34 H 1.07993 * 120.00696 * 359.95650 * 8 7 6 35 35 H 1.07998 * 119.90093 * 179.97438 * 11 9 8 36 36 H 1.07995 * 119.99542 * 180.29853 * 12 11 9 37 37 H 0.97000 * 119.99670 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9702 6 7 2.1561 -3.0064 2.1050 7 6 1.9481 -4.3870 2.1742 8 6 1.2456 -5.0360 1.1691 9 6 1.0418 -6.4019 1.2398 10 35 0.0846 -7.2844 -0.1317 11 6 1.5363 -7.1249 2.3116 12 6 2.2421 -6.4871 3.3137 13 6 2.4465 -5.1164 3.2541 14 8 3.1348 -4.4870 4.2413 15 6 3.4923 -5.2301 5.3075 16 1 3.3028 -6.2933 5.3128 17 6 4.1036 -4.6295 6.3973 18 7 4.3343 -3.3341 6.3909 19 14 4.5985 -5.6591 7.8752 20 1 5.9843 -6.1592 7.6884 21 1 4.5342 -4.8261 9.1028 22 1 3.6707 -6.8107 8.0093 23 1 -0.3632 0.4512 0.9233 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 3.0828 1.3433 -0.0709 27 1 1.5898 1.9164 -0.8525 28 1 1.7044 1.8723 0.9233 29 1 1.5611 -0.3873 2.0627 30 1 3.0798 -0.6611 1.1755 31 1 2.0659 -2.6214 0.0450 32 1 0.5472 -2.3475 0.9322 33 1 2.6484 -2.5543 2.8079 34 1 0.8580 -4.4745 0.3320 35 1 1.3740 -8.1914 2.3623 36 1 2.6306 -7.0551 4.1460 37 1 4.7616 -2.9139 7.1536 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161668353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:34 Heat of formation + Delta-G solvation = -7.580107 kcal Electronic energy + Delta-G solvation = -19728.122801 eV Core-core repulsion = 16551.840180 eV Total energy + Delta-G solvation = -3176.282621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.98692 -38.96619 -38.19842 -36.20602 -34.27825 -32.39886 -31.53871 -29.74953 -28.57081 -28.39100 -27.20631 -25.14479 -23.17508 -22.50906 -21.86508 -19.81652 -19.06454 -17.31951 -17.21934 -16.71352 -16.34353 -15.98797 -15.76041 -15.70661 -15.45805 -14.95858 -14.79626 -14.64560 -14.28572 -13.62609 -13.56544 -13.29368 -12.97286 -12.73484 -12.68549 -12.63365 -12.45043 -12.41133 -12.17251 -12.08409 -11.55402 -11.35281 -11.07619 -10.76480 -10.65562 -9.42044 -9.27338 -8.44804 -8.11710 -6.06208 0.44950 0.66794 0.84982 1.38158 1.45138 1.53704 2.17770 2.39075 2.78726 3.14070 3.20090 3.41462 3.84115 4.02413 4.07794 4.25802 4.30155 4.41620 4.49405 4.53198 4.63162 4.66627 4.75995 4.84952 4.89584 4.92734 4.99040 5.02908 5.05312 5.23944 5.44677 5.59263 5.87472 5.92772 6.00998 6.01936 6.48622 6.79114 7.01378 7.78791 8.77409 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.007114 B = 0.005283 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3934.902254 B = 5298.813397 C = 9116.413280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.552 5.552 3 C 0.024 3.976 4 C 0.052 3.948 5 C 0.140 3.860 6 N -0.748 5.748 7 C 0.161 3.839 8 C -0.137 4.137 9 C -0.118 4.118 10 Br -0.052 7.052 11 C -0.095 4.095 12 C -0.203 4.203 13 C 0.071 3.929 14 O -0.218 6.218 15 C -0.406 4.406 16 H 0.100 0.900 17 C -0.018 4.018 18 N -0.915 5.915 19 Si 1.012 2.988 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.255 1.255 23 H 0.024 0.976 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.025 0.975 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.398 0.602 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.141 0.437 -12.798 15.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.276 5.276 3 C -0.124 4.124 4 C -0.077 4.077 5 C 0.016 3.984 6 N -0.381 5.381 7 C 0.057 3.943 8 C -0.163 4.163 9 C -0.198 4.198 10 Br 0.032 6.968 11 C -0.117 4.117 12 C -0.224 4.224 13 C 0.018 3.982 14 O -0.125 6.125 15 C -0.482 4.482 16 H 0.118 0.882 17 C -0.216 4.216 18 N -0.553 5.553 19 Si 0.832 3.168 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.178 1.178 23 H 0.043 0.957 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.232 0.768 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.271 0.367 -13.769 16.066 hybrid contribution 0.547 0.469 2.238 2.351 sum -7.724 0.837 -11.531 13.904 Atomic orbital electron populations 1.22549 0.86388 1.02962 1.01185 1.61916 1.09064 1.14814 1.41803 1.22454 1.01110 0.87618 1.01250 1.22106 1.00699 0.92789 0.92086 1.21187 0.98272 0.90293 0.88664 1.44384 1.63243 1.03634 1.26799 1.17140 0.98989 0.84570 0.93589 1.20237 1.03919 0.92995 0.99147 1.21131 1.07303 0.94386 0.96978 1.96520 1.73765 1.78149 1.48318 1.20716 0.98351 0.99962 0.92631 1.21005 1.06072 0.93266 1.02069 1.19479 0.95820 0.92294 0.90644 1.83849 1.63868 1.38237 1.26542 1.21740 1.39876 0.93016 0.93544 0.88236 1.26397 0.96630 0.97489 1.01050 1.70155 1.41781 1.11175 1.32205 0.84665 0.79126 0.77502 0.75496 1.19087 1.19917 1.17839 0.95710 0.89530 0.91030 0.91147 0.89481 0.95607 0.94858 0.90541 0.91747 0.92125 0.76765 0.83909 0.84196 0.85198 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.32 127.69 1.19 1.51 16 2 N -0.55 -12.04 5.02 -948.85 -4.76 -16.80 16 3 C 0.02 0.42 9.57 127.69 1.22 1.64 16 4 C 0.05 1.34 5.07 86.30 0.44 1.77 16 5 C 0.14 4.00 4.84 86.38 0.42 4.42 16 6 N -0.75 -27.93 5.73 -338.93 -1.94 -29.87 16 7 C 0.16 6.57 6.67 38.30 0.26 6.83 16 8 C -0.14 -4.83 9.05 22.40 0.20 -4.63 16 9 C -0.12 -3.99 6.22 22.33 0.14 -3.85 16 10 Br -0.05 -1.41 33.69 -20.37 -0.69 -2.10 16 11 C -0.09 -3.39 9.77 22.30 0.22 -3.17 16 12 C -0.20 -8.63 9.16 22.37 0.20 -8.42 16 13 C 0.07 3.36 6.67 22.69 0.15 3.51 16 14 O -0.22 -12.19 9.00 -23.03 -0.21 -12.40 16 15 C -0.41 -22.46 9.49 67.91 0.64 -21.82 16 16 H 0.10 5.10 5.21 -2.91 -0.02 5.08 16 17 C -0.02 -0.96 5.49 84.82 0.47 -0.50 16 18 N -0.91 -53.44 13.67 21.61 0.30 -53.14 16 19 Si 1.01 41.63 29.55 68.60 2.03 43.66 16 20 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 23 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.09 1.27 8.12 -2.39 -0.02 1.25 16 25 H 0.07 1.34 6.47 -2.39 -0.02 1.33 16 26 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 27 H 0.09 1.23 8.12 -2.38 -0.02 1.21 16 28 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.03 0.91 8.12 -2.38 -0.02 0.89 16 30 H 0.08 2.04 8.06 -2.39 -0.02 2.02 16 31 H 0.06 1.82 7.95 -2.39 -0.02 1.80 16 32 H 0.06 1.64 6.36 -2.38 -0.02 1.62 16 33 H 0.40 16.58 7.84 -92.71 -0.73 15.85 16 34 H 0.14 4.35 6.73 -2.91 -0.02 4.33 16 35 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 36 H 0.13 5.53 5.64 -2.91 -0.02 5.51 16 37 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -62.04 328.71 0.64 -61.40 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.36 Total: 31.96 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 5.55 Total: -22.70 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -6.41 Total: -99.81 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.21 Total: -12.40 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 35 Polarization: -1.41 SS G_CDS: -0.69 Total: -2.10 kcal Total: -62.04 0.64 -61.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161668353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.816 kcal (2) G-P(sol) polarization free energy of solvation -62.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds