Wall clock time and date at job start Tue Mar 31 2020 15:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86799 * 120.00501 * 2 1 4 4 H 1.48500 * 109.46872 * 273.19484 * 3 2 1 5 5 H 1.48504 * 109.47066 * 33.19063 * 3 2 1 6 6 H 1.48495 * 109.47506 * 153.19344 * 3 2 1 7 7 C 1.39914 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00032 * 345.79165 * 7 2 1 9 9 C 1.41184 * 120.00042 * 165.78202 * 7 2 1 10 10 C 1.39987 * 119.51081 * 330.30020 * 9 7 2 11 11 C 1.39870 * 120.01794 * 179.97438 * 10 9 7 12 12 C 1.40855 * 121.16408 * 179.97438 * 11 10 9 13 13 C 1.36193 * 119.60563 * 180.02562 * 12 11 10 14 14 C 1.39256 * 120.95618 * 359.97438 * 13 12 11 15 15 C 1.36532 * 120.98680 * 0.02655 * 14 13 12 16 16 C 1.39879 * 119.73282 * 359.95671 * 15 14 13 17 17 C 1.46050 * 121.16716 * 180.02562 * 16 15 14 18 18 N 1.39304 * 120.29212 * 359.97438 * 17 16 15 19 19 C 1.46504 * 119.99672 * 219.99835 * 18 17 16 20 20 H 1.09001 * 110.63367 * 263.95813 * 19 18 17 21 21 S 1.82472 * 110.70697 * 27.06936 * 19 18 17 22 22 C 1.77284 * 94.25755 * 118.37998 * 21 19 18 23 23 O 1.21574 * 126.16255 * 180.02562 * 22 21 19 24 24 N 1.33466 * 107.67544 * 359.97438 * 22 21 19 25 25 C 1.32247 * 121.26226 * 359.97438 * 24 22 21 26 26 O 1.21234 * 123.10083 * 179.97438 * 25 24 22 27 27 C 1.36220 * 119.40029 * 180.27794 * 17 16 15 28 28 H 0.96999 * 119.99741 * 359.97438 * 1 2 3 29 29 H 1.07993 * 119.98653 * 359.96889 * 10 9 7 30 30 H 1.07992 * 120.19860 * 0.03956 * 12 11 10 31 31 H 1.08003 * 119.52529 * 180.02562 * 13 12 11 32 32 H 1.07997 * 119.50555 * 180.02562 * 14 13 12 33 33 H 1.07998 * 120.13137 * 180.02562 * 15 14 13 34 34 H 0.96999 * 120.00262 * 40.00395 * 18 17 16 35 35 H 0.97007 * 119.36882 * 179.72777 * 24 22 21 36 36 H 1.08001 * 119.67083 * 179.74869 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.4225 2.0853 -1.3979 5 1 1.4754 2.6322 0.7665 6 1 3.5722 1.4215 0.6314 7 6 2.0079 -1.2117 0.0005 8 1 1.4926 -2.1326 0.2305 9 6 3.3873 -1.2306 -0.2998 10 6 3.9186 -0.2642 -1.1619 11 6 5.2838 -0.2727 -1.4663 12 6 5.8438 0.6877 -2.3311 13 6 7.1772 0.6495 -2.6060 14 6 7.9968 -0.3260 -2.0439 15 6 7.4873 -1.2721 -1.2016 16 6 6.1226 -1.2653 -0.8949 17 6 5.5447 -2.2621 0.0026 18 7 6.3501 -3.2453 0.5728 19 6 5.8541 -4.6184 0.6954 20 1 5.4366 -4.7888 1.6878 21 16 4.6149 -4.9744 -0.5958 22 6 5.5670 -6.2730 -1.3375 23 8 5.2448 -6.9367 -2.3038 24 7 6.7017 -6.3900 -0.6446 25 6 6.9545 -5.6123 0.3947 26 8 7.9731 -5.6900 1.0475 27 6 4.2099 -2.2254 0.2721 28 1 -0.4850 0.8401 0.0004 29 1 3.2743 0.4880 -1.5922 30 1 5.2197 1.4501 -2.7733 31 1 7.6053 1.3868 -3.2690 32 1 9.0511 -0.3342 -2.2777 33 1 8.1357 -2.0220 -0.7731 34 1 7.2393 -3.0209 0.8887 35 1 7.3519 -7.0607 -0.9063 36 1 3.7772 -2.9628 0.9320 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163673615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:16 Heat of formation + Delta-G solvation = -4.224145 kcal Electronic energy + Delta-G solvation = -24842.398157 eV Core-core repulsion = 21190.041373 eV Total energy + Delta-G solvation = -3652.356784 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.60216 -39.41461 -38.97307 -36.53596 -35.94065 -35.30160 -33.11769 -31.13405 -30.01065 -28.76836 -27.09824 -25.13298 -25.03770 -22.67228 -21.78198 -21.41003 -20.59583 -18.96056 -18.32684 -17.93798 -17.26285 -16.77714 -16.32496 -16.09855 -15.69128 -15.24320 -15.17848 -15.08996 -14.49736 -14.30044 -14.08998 -13.39281 -13.29774 -12.75538 -12.63427 -12.35834 -11.93329 -11.86475 -11.38989 -11.26106 -11.07391 -10.93034 -10.88963 -10.71753 -10.32329 -10.07575 -9.89744 -9.71155 -9.44697 -9.06378 -8.70968 -8.40464 -7.73378 -7.13065 -6.68116 -4.63708 0.60149 0.80879 1.21356 1.48943 2.03429 2.17976 2.43411 2.93180 3.04003 3.15234 3.27887 3.42333 3.47552 3.77388 3.90944 4.62905 4.70634 5.26736 5.32920 5.42887 5.51650 5.62059 5.93049 6.02689 6.09899 6.19060 6.30737 6.36421 6.51433 6.54646 6.71441 6.85285 6.97758 7.10006 7.12533 7.25025 7.25596 7.44471 7.59133 7.69449 7.84655 7.96296 8.16518 8.40239 8.59834 9.86729 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012275 B = 0.005130 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.427569 B = 5456.576614 C = 6821.617573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.080 3.920 3 Si 0.923 3.077 4 H -0.269 1.269 5 H -0.296 1.296 6 H -0.240 1.240 7 C -0.418 4.418 8 H 0.095 0.905 9 C 0.114 3.886 10 C -0.305 4.305 11 C 0.042 3.958 12 C -0.155 4.155 13 C -0.102 4.102 14 C -0.196 4.196 15 C -0.070 4.070 16 C -0.145 4.145 17 C 0.196 3.804 18 N -0.736 5.736 19 C 0.151 3.849 20 H 0.145 0.855 21 S -0.049 6.049 22 C 0.522 3.478 23 O -0.440 6.440 24 N -0.680 5.680 25 C 0.527 3.473 26 O -0.463 6.463 27 C -0.175 4.175 28 H 0.290 0.710 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.407 0.593 35 H 0.415 0.585 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.073 -6.079 1.378 11.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.750 3.250 4 H -0.195 1.195 5 H -0.224 1.224 6 H -0.163 1.163 7 C -0.445 4.445 8 H 0.113 0.887 9 C 0.109 3.891 10 C -0.326 4.326 11 C 0.041 3.959 12 C -0.173 4.173 13 C -0.120 4.120 14 C -0.215 4.215 15 C -0.088 4.088 16 C -0.148 4.148 17 C 0.099 3.901 18 N -0.380 5.380 19 C -0.071 4.071 20 H 0.161 0.839 21 S 0.176 5.824 22 C 0.202 3.798 23 O -0.313 6.313 24 N -0.349 5.349 25 C 0.310 3.690 26 O -0.332 6.332 27 C -0.199 4.199 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.246 0.754 35 H 0.255 0.745 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.757 -5.937 0.989 10.625 hybrid contribution 1.924 -0.078 0.147 1.932 sum 10.681 -6.014 1.136 12.310 Atomic orbital electron populations 1.69664 1.08217 1.30860 1.33017 1.26290 0.94879 1.02233 0.90659 0.86101 0.80936 0.78822 0.79167 1.19536 1.22410 1.16279 1.19660 0.91767 0.95850 1.37270 0.88718 1.17296 0.92863 0.90062 0.88851 1.20676 0.93626 1.07762 1.10498 1.17594 0.93088 0.92114 0.93064 1.20892 0.95036 1.00054 1.01359 1.20540 0.93954 0.98095 0.99396 1.20316 0.98675 0.98838 1.03623 1.20499 0.93882 0.97284 0.97174 1.18373 0.93299 0.99983 1.03153 1.18070 0.90460 0.88529 0.93009 1.43789 1.19883 1.02316 1.71987 1.23818 0.93498 0.87403 1.02334 0.83855 1.89109 1.22702 1.36256 1.34344 1.22752 0.83846 0.87861 0.85317 1.90935 1.70318 1.46369 1.23663 1.44629 1.22588 1.37385 1.30273 1.20292 0.88331 0.81266 0.79122 1.90853 1.26389 1.67524 1.48428 1.20659 0.92129 1.02797 1.04351 0.89993 0.87805 0.87168 0.87839 0.88018 0.88080 0.75420 0.74480 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.80 13.93 55.55 0.77 -19.02 16 2 C 0.08 1.96 5.44 -17.35 -0.09 1.87 16 3 Si 0.92 20.07 24.38 -169.99 -4.14 15.93 16 4 H -0.27 -5.77 6.65 56.52 0.38 -5.40 16 5 H -0.30 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.24 -5.36 6.71 56.52 0.38 -4.98 16 7 C -0.42 -10.27 9.55 -37.84 -0.36 -10.63 16 8 H 0.09 2.40 8.06 -52.48 -0.42 1.98 16 9 C 0.11 2.60 5.15 -107.01 -0.55 2.05 16 10 C -0.31 -7.01 6.72 -38.32 -0.26 -7.26 16 11 C 0.04 0.90 5.74 -106.87 -0.61 0.29 16 12 C -0.15 -2.99 9.78 -39.33 -0.38 -3.37 16 13 C -0.10 -1.73 9.95 -39.94 -0.40 -2.13 16 14 C -0.20 -3.23 9.96 -39.82 -0.40 -3.63 16 15 C -0.07 -1.20 9.52 -39.58 -0.38 -1.58 16 16 C -0.15 -2.83 5.90 -104.73 -0.62 -3.45 16 17 C 0.20 3.51 5.70 -82.06 -0.47 3.04 16 18 N -0.74 -10.20 5.06 -54.80 -0.28 -10.48 16 19 C 0.15 1.78 4.01 -4.90 -0.02 1.76 16 20 H 0.14 1.36 8.14 -51.93 -0.42 0.94 16 21 S -0.05 -0.69 19.77 -107.50 -2.13 -2.82 16 22 C 0.52 6.78 8.91 53.47 0.48 7.25 16 23 O -0.44 -6.80 18.05 5.30 0.10 -6.71 16 24 N -0.68 -7.06 5.05 -14.78 -0.07 -7.13 16 25 C 0.53 5.87 7.82 -11.80 -0.09 5.78 16 26 O -0.46 -5.90 18.02 5.60 0.10 -5.80 16 27 C -0.17 -3.46 7.49 -39.19 -0.29 -3.75 16 28 H 0.29 6.55 8.30 -40.82 -0.34 6.21 16 29 H 0.10 2.43 4.27 -52.49 -0.22 2.21 16 30 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 31 H 0.10 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.10 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.10 1.49 7.11 -52.49 -0.37 1.11 16 34 H 0.41 5.12 8.04 -40.82 -0.33 4.79 16 35 H 0.42 3.40 8.88 -40.82 -0.36 3.04 16 36 H 0.11 1.96 7.08 -52.49 -0.37 1.59 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -27.47 320.41 -8.23 -35.70 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -2.96 Total: 9.26 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -4.45 Total: -13.75 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.42 Total: -36.64 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.20 Total: -12.51 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.14 Total: 15.93 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -2.13 Total: -2.82 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.47 -8.23 -35.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163673615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.477 kcal (2) G-P(sol) polarization free energy of solvation -27.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds