Wall clock time and date at job start Tue Mar 31 2020 15:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86799 * 120.00501 * 2 1 4 4 H 1.48500 * 109.46872 * 273.19484 * 3 2 1 5 5 H 1.48504 * 109.47066 * 33.19063 * 3 2 1 6 6 H 1.48495 * 109.47506 * 153.19344 * 3 2 1 7 7 C 1.39914 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00032 * 345.79165 * 7 2 1 9 9 C 1.41184 * 120.00042 * 165.78202 * 7 2 1 10 10 C 1.39987 * 119.51081 * 330.30020 * 9 7 2 11 11 C 1.39870 * 120.01794 * 179.97438 * 10 9 7 12 12 C 1.40855 * 121.16408 * 179.97438 * 11 10 9 13 13 C 1.36193 * 119.60563 * 180.02562 * 12 11 10 14 14 C 1.39256 * 120.95618 * 359.97438 * 13 12 11 15 15 C 1.36532 * 120.98680 * 0.02655 * 14 13 12 16 16 C 1.39879 * 119.73282 * 359.95671 * 15 14 13 17 17 C 1.46050 * 121.16716 * 180.02562 * 16 15 14 18 18 N 1.39304 * 120.29212 * 359.97438 * 17 16 15 19 19 C 1.46504 * 119.99672 * 219.99835 * 18 17 16 20 20 H 1.09001 * 110.63367 * 263.95813 * 19 18 17 21 21 S 1.82472 * 110.70697 * 27.06936 * 19 18 17 22 22 C 1.77284 * 94.25755 * 118.37998 * 21 19 18 23 23 O 1.21574 * 126.16255 * 180.02562 * 22 21 19 24 24 N 1.33466 * 107.67544 * 359.97438 * 22 21 19 25 25 C 1.32247 * 121.26226 * 359.97438 * 24 22 21 26 26 O 1.21234 * 123.10083 * 179.97438 * 25 24 22 27 27 C 1.36220 * 119.40029 * 180.27794 * 17 16 15 28 28 H 0.96999 * 119.99741 * 359.97438 * 1 2 3 29 29 H 1.07993 * 119.98653 * 359.96889 * 10 9 7 30 30 H 1.07992 * 120.19860 * 0.03956 * 12 11 10 31 31 H 1.08003 * 119.52529 * 180.02562 * 13 12 11 32 32 H 1.07997 * 119.50555 * 180.02562 * 14 13 12 33 33 H 1.07998 * 120.13137 * 180.02562 * 15 14 13 34 34 H 0.96999 * 120.00262 * 40.00395 * 18 17 16 35 35 H 0.97007 * 119.36882 * 179.72777 * 24 22 21 36 36 H 1.08001 * 119.67083 * 179.74869 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.4225 2.0853 -1.3979 5 1 1.4754 2.6322 0.7665 6 1 3.5722 1.4215 0.6314 7 6 2.0079 -1.2117 0.0005 8 1 1.4926 -2.1326 0.2305 9 6 3.3873 -1.2306 -0.2998 10 6 3.9186 -0.2642 -1.1619 11 6 5.2838 -0.2727 -1.4663 12 6 5.8438 0.6877 -2.3311 13 6 7.1772 0.6495 -2.6060 14 6 7.9968 -0.3260 -2.0439 15 6 7.4873 -1.2721 -1.2016 16 6 6.1226 -1.2653 -0.8949 17 6 5.5447 -2.2621 0.0026 18 7 6.3501 -3.2453 0.5728 19 6 5.8541 -4.6184 0.6954 20 1 5.4366 -4.7888 1.6878 21 16 4.6149 -4.9744 -0.5958 22 6 5.5670 -6.2730 -1.3375 23 8 5.2448 -6.9367 -2.3038 24 7 6.7017 -6.3900 -0.6446 25 6 6.9545 -5.6123 0.3947 26 8 7.9731 -5.6900 1.0475 27 6 4.2099 -2.2254 0.2721 28 1 -0.4850 0.8401 0.0004 29 1 3.2743 0.4880 -1.5922 30 1 5.2197 1.4501 -2.7733 31 1 7.6053 1.3868 -3.2690 32 1 9.0511 -0.3342 -2.2777 33 1 8.1357 -2.0220 -0.7731 34 1 7.2393 -3.0209 0.8887 35 1 7.3519 -7.0607 -0.9063 36 1 3.7772 -2.9628 0.9320 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163673615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:16 Heat of formation + Delta-G solvation = -22.903523 kcal Electronic energy + Delta-G solvation = -24843.208156 eV Core-core repulsion = 21190.041373 eV Total energy + Delta-G solvation = -3653.166782 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.60906 -40.84903 -40.12723 -37.87586 -37.08674 -36.73665 -34.77789 -32.50623 -31.57536 -30.13890 -28.41395 -26.74544 -26.08892 -24.01695 -23.18651 -22.77337 -22.01758 -20.14714 -19.49651 -19.30106 -18.34018 -18.09632 -17.87387 -17.25655 -17.09196 -16.57655 -16.51099 -16.17783 -15.80331 -15.68957 -15.23565 -15.01125 -14.76070 -14.29735 -14.18819 -13.84127 -13.46459 -13.12152 -12.90043 -12.75843 -12.56855 -12.31342 -12.08889 -11.89446 -11.88156 -11.53608 -11.37457 -11.21187 -11.01072 -10.65786 -9.88646 -9.72621 -9.29047 -8.91718 -8.15146 -6.46066 -0.48141 -0.23075 -0.00452 0.20305 0.51445 1.13195 1.28192 1.35558 1.39762 1.47735 1.56460 2.14239 2.17786 2.27024 2.46514 2.98277 3.62110 3.83154 3.99842 4.15495 4.29998 4.51686 4.53572 4.63316 4.75168 4.76598 4.85442 4.98886 5.05777 5.22933 5.32610 5.47316 5.52908 5.54958 5.73601 5.82196 5.89958 6.00097 6.18340 6.19449 6.34918 6.39682 6.63429 6.70689 6.84785 8.14661 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012275 B = 0.005130 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.427569 B = 5456.576614 C = 6821.617573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.051 3.949 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.251 1.251 7 C -0.457 4.457 8 H 0.068 0.932 9 C 0.106 3.894 10 C -0.322 4.322 11 C 0.015 3.985 12 C -0.175 4.175 13 C -0.094 4.094 14 C -0.181 4.181 15 C -0.074 4.074 16 C -0.153 4.153 17 C 0.220 3.780 18 N -0.726 5.726 19 C 0.159 3.841 20 H 0.175 0.825 21 S -0.100 6.100 22 C 0.541 3.459 23 O -0.464 6.464 24 N -0.663 5.663 25 C 0.544 3.456 26 O -0.467 6.467 27 C -0.194 4.194 28 H 0.294 0.706 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.419 0.581 35 H 0.430 0.570 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.774 -6.464 1.229 16.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.165 4.165 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.175 1.175 7 C -0.486 4.486 8 H 0.086 0.914 9 C 0.102 3.898 10 C -0.343 4.343 11 C 0.014 3.986 12 C -0.193 4.193 13 C -0.112 4.112 14 C -0.199 4.199 15 C -0.092 4.092 16 C -0.156 4.156 17 C 0.122 3.878 18 N -0.371 5.371 19 C -0.061 4.061 20 H 0.192 0.808 21 S 0.125 5.875 22 C 0.221 3.779 23 O -0.338 6.338 24 N -0.333 5.333 25 C 0.327 3.673 26 O -0.337 6.337 27 C -0.219 4.219 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.259 0.741 35 H 0.273 0.727 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.508 -6.339 0.856 14.946 hybrid contribution 0.924 -0.069 0.073 0.929 sum 14.432 -6.408 0.929 15.818 Atomic orbital electron populations 1.69695 1.08995 1.31520 1.36436 1.26772 0.95295 1.04042 0.90386 0.85394 0.79409 0.76756 0.78909 1.19561 1.21358 1.17490 1.19588 0.92985 0.95209 1.40816 0.91409 1.17432 0.92517 0.91019 0.88796 1.20734 0.94700 1.07772 1.11066 1.17881 0.92749 0.93668 0.94296 1.21085 0.96528 1.00106 1.01623 1.20977 0.92888 0.98530 0.98788 1.20858 1.00496 0.97144 1.01394 1.20844 0.92882 0.98273 0.97224 1.18723 0.94538 0.99544 1.02793 1.17941 0.89981 0.88404 0.91490 1.43659 1.19794 1.02389 1.71217 1.24022 0.92990 0.86420 1.02710 0.80840 1.89477 1.24683 1.37548 1.35805 1.22349 0.83942 0.86902 0.84718 1.90936 1.70882 1.47193 1.24838 1.44308 1.21991 1.37454 1.29542 1.19905 0.87599 0.80920 0.78887 1.90882 1.26486 1.67763 1.48542 1.20597 0.92926 1.02950 1.05386 0.89519 0.89236 0.86940 0.84414 0.84210 0.85009 0.74052 0.72685 0.86772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.81 13.93 21.82 0.30 -44.50 16 2 C 0.05 2.65 5.44 85.25 0.46 3.11 16 3 Si 0.97 43.41 24.38 68.60 1.67 45.08 16 4 H -0.27 -11.82 6.65 99.48 0.66 -11.16 16 5 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.25 -11.50 6.71 99.48 0.67 -10.83 16 7 C -0.46 -24.17 9.55 23.40 0.22 -23.95 16 8 H 0.07 3.79 8.06 -2.91 -0.02 3.77 16 9 C 0.11 5.08 5.15 -21.41 -0.11 4.97 16 10 C -0.32 -15.22 6.72 23.09 0.16 -15.07 16 11 C 0.01 0.62 5.74 -21.32 -0.12 0.50 16 12 C -0.17 -6.41 9.78 22.43 0.22 -6.19 16 13 C -0.09 -2.78 9.95 22.04 0.22 -2.56 16 14 C -0.18 -4.93 9.96 22.12 0.22 -4.71 16 15 C -0.07 -2.18 9.52 22.27 0.21 -1.97 16 16 C -0.15 -5.60 5.90 -19.93 -0.12 -5.72 16 17 C 0.22 7.52 5.70 39.51 0.23 7.74 16 18 N -0.73 -17.78 5.06 -327.30 -1.66 -19.43 16 19 C 0.16 3.30 4.01 85.82 0.34 3.64 16 20 H 0.17 2.71 8.14 -2.39 -0.02 2.70 16 21 S -0.10 -2.72 19.77 -56.49 -1.12 -3.83 16 22 C 0.54 13.05 8.91 129.99 1.16 14.20 16 23 O -0.46 -13.78 18.05 -3.95 -0.07 -13.85 16 24 N -0.66 -11.70 5.05 -439.47 -2.22 -13.91 16 25 C 0.54 10.10 7.82 88.24 0.69 10.79 16 26 O -0.47 -9.91 18.02 -2.89 -0.05 -9.97 16 27 C -0.19 -7.77 7.49 22.52 0.17 -7.60 16 28 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 29 H 0.09 4.39 4.27 -2.91 -0.01 4.38 16 30 H 0.11 3.96 8.06 -2.91 -0.02 3.94 16 31 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.13 3.07 7.11 -2.91 -0.02 3.05 16 34 H 0.42 8.65 8.04 -92.71 -0.75 7.91 16 35 H 0.43 5.55 8.88 -92.70 -0.82 4.73 16 36 H 0.11 4.28 7.08 -2.91 -0.02 4.26 16 Total: -1.00 -62.82 320.41 0.34 -62.48 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -0.47 Total: 20.77 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 3.95 Total: -22.82 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -3.57 Total: -77.85 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.12 Total: -23.82 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.67 Total: 45.08 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -1.12 Total: -3.83 kcal Total: -62.82 0.34 -62.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163673615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.573 kcal (2) G-P(sol) polarization free energy of solvation -62.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds