Wall clock time and date at job start Tue Mar 31 2020 15:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.46807 * 2 1 4 4 N 1.31813 * 119.83775 * 270.24990 * 3 2 1 5 5 C 1.33039 * 120.00192 * 180.25394 * 4 3 2 6 6 C 1.43202 * 120.15354 * 179.76732 * 5 4 3 7 7 N 5.84679 * 105.79397 * 323.18356 * 2 1 3 8 8 C 1.40528 * 119.69070 * 359.50004 * 5 4 3 9 9 N 1.38593 * 120.16477 * 180.27009 * 8 5 4 10 10 C 1.38439 * 120.00207 * 175.67334 * 9 8 5 11 11 C 1.38949 * 119.99879 * 301.39911 * 10 9 8 12 12 H 1.07999 * 120.00129 * 151.14848 * 11 10 9 13 13 C 1.40872 * 119.99978 * 331.15245 * 11 10 9 14 14 N 1.30319 * 120.00129 * 168.02196 * 13 11 10 15 15 Si 1.86796 * 120.00018 * 348.01743 * 13 11 10 16 16 H 1.48496 * 109.47291 * 89.56353 * 15 13 11 17 17 H 1.48499 * 109.47285 * 209.56652 * 15 13 11 18 18 H 1.48505 * 109.47122 * 329.56692 * 15 13 11 19 19 C 1.41134 * 119.99966 * 121.40278 * 10 9 8 20 20 C 1.43201 * 119.99612 * 175.26417 * 19 10 9 21 21 N 9.39705 * 111.81952 * 25.72632 * 2 1 3 22 22 C 1.43194 * 119.99880 * 355.25807 * 19 10 9 23 23 N 8.00256 * 131.73286 * 1.94597 * 2 1 3 24 24 N 1.32700 * 119.67959 * 0.25031 * 8 5 4 25 25 C 1.32228 * 119.98310 * 359.97438 * 24 8 5 26 26 Cl 1.73605 * 119.83761 * 180.02562 * 25 24 8 27 27 H 1.09001 * 109.46826 * 60.00001 * 1 2 3 28 28 H 1.09002 * 109.46951 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47524 * 300.00310 * 1 2 3 30 30 H 1.08996 * 109.47114 * 240.00337 * 2 1 3 31 31 H 1.09001 * 109.46826 * 119.99999 * 2 1 3 32 32 H 0.97002 * 120.00344 * 355.67239 * 9 8 5 33 33 H 0.96991 * 120.00585 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2461 2.0409 -1.1434 5 6 2.6943 3.2935 -1.1472 6 6 2.9325 3.9685 -2.3875 7 7 3.1214 4.5040 -3.3714 8 6 2.9275 3.9531 0.0715 9 7 3.3891 5.2599 0.0790 10 6 3.5324 5.9366 1.2782 11 6 2.4351 6.1120 2.1124 12 1 2.5760 6.1939 3.1800 13 6 1.1388 6.1828 1.5655 14 7 0.0975 6.1121 2.3460 15 14 0.9123 6.3782 -0.2784 16 1 0.8483 5.0377 -0.9140 17 1 -0.3491 7.1142 -0.5470 18 1 2.0580 7.1381 -0.8400 19 6 4.7930 6.4483 1.6534 20 6 4.9211 7.2350 2.8431 21 7 5.0227 7.8591 3.7868 22 6 5.9439 6.1808 0.8445 23 7 6.8570 5.9685 0.2028 24 7 2.7033 3.3187 1.2153 25 6 2.2621 2.0723 1.2042 26 17 1.9694 1.2463 2.7029 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6117 5.7004 -0.7560 33 1 -0.7950 6.1613 1.9695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079282.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:39 Heat of formation + Delta-G solvation = 136.355905 kcal Electronic energy + Delta-G solvation = -24509.158567 eV Core-core repulsion = 20789.606493 eV Total energy + Delta-G solvation = -3719.552074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.60584 -38.36385 -37.09306 -36.60337 -35.75531 -34.93737 -34.72952 -33.99168 -33.57312 -31.39641 -28.94006 -27.50453 -25.84523 -24.80552 -22.57067 -21.44716 -19.60795 -19.30170 -18.90918 -17.92047 -17.19488 -16.65842 -15.93341 -15.62098 -15.28199 -14.64629 -14.15539 -13.80764 -13.53142 -13.44330 -13.26825 -13.04404 -12.92962 -12.85231 -12.59595 -12.33164 -12.01657 -11.92547 -11.87989 -11.81014 -11.71146 -11.68577 -11.56495 -11.39921 -11.13656 -10.99907 -10.89368 -10.77026 -10.39253 -9.77314 -9.44504 -8.69316 -8.00087 -7.73539 -5.56760 0.14689 0.91383 1.46959 1.80709 2.31141 2.43024 2.56818 2.59197 2.67914 2.86107 3.15658 3.31723 3.59857 3.68210 3.90212 4.01093 4.05062 4.13907 4.25380 4.46483 4.64513 4.98502 5.13161 5.17353 5.23274 5.34226 5.73489 5.76570 5.88232 5.93460 6.11002 6.21294 6.44245 6.70998 6.96171 7.15520 7.29383 7.32196 7.53882 7.59143 7.90403 8.75077 8.98906 9.00048 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.005820 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.297073 B = 4810.150208 C = 5147.889698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 C 0.042 3.958 4 N -0.350 5.350 5 C 0.072 3.928 6 C 0.270 3.730 7 N -0.383 5.383 8 C 0.426 3.574 9 N -0.646 5.646 10 C 0.323 3.677 11 C -0.317 4.317 12 H 0.130 0.870 13 C 0.075 3.925 14 N -0.712 5.712 15 Si 0.895 3.105 16 H -0.255 1.255 17 H -0.268 1.268 18 H -0.244 1.244 19 C -0.286 4.286 20 C 0.324 3.676 21 N -0.518 5.518 22 C 0.302 3.698 23 N -0.524 5.524 24 N -0.441 5.441 25 C 0.212 3.788 26 Cl 0.005 6.995 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.415 0.585 33 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 -12.517 -3.697 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 C -0.107 4.107 4 N -0.065 5.065 5 C -0.075 4.075 6 C -0.047 4.047 7 N -0.061 5.061 8 C 0.185 3.815 9 N -0.274 5.274 10 C 0.222 3.778 11 C -0.344 4.344 12 H 0.148 0.852 13 C -0.158 4.158 14 N -0.329 5.329 15 Si 0.719 3.281 16 H -0.180 1.180 17 H -0.194 1.194 18 H -0.167 1.167 19 C -0.304 4.304 20 C 0.015 3.985 21 N -0.200 5.200 22 C -0.006 4.006 23 N -0.206 5.206 24 N -0.163 5.163 25 C 0.038 3.962 26 Cl 0.033 6.967 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.255 0.745 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.675 -10.971 -4.347 13.558 hybrid contribution -0.681 -0.056 -0.510 0.853 sum -7.356 -11.027 -4.857 14.118 Atomic orbital electron populations 1.21746 0.93812 1.02355 1.02641 1.20431 0.96798 0.88549 1.04473 1.21653 1.03835 0.99099 0.86097 1.68034 1.05081 1.05130 1.28251 1.16447 1.11735 0.92686 0.86671 1.24516 0.94108 0.93950 0.92084 1.81262 1.08241 1.07846 1.08710 1.18588 0.89111 0.86113 0.87662 1.42422 1.65300 1.09087 1.10543 1.16811 0.91674 0.88726 0.80630 1.20021 0.88351 1.27683 0.98347 0.85231 1.26651 0.95320 0.91427 1.02398 1.69363 1.01111 1.22457 1.40007 0.86462 0.80645 0.81140 0.79881 1.18012 1.19427 1.16703 1.12615 0.87926 1.28449 1.01447 1.24482 0.92261 0.90722 0.91065 1.81079 1.08683 1.16541 1.13695 1.25233 0.92035 0.91162 0.92138 1.81104 1.10391 1.15837 1.13244 1.67627 1.14825 1.07378 1.26468 1.22746 0.94173 0.90087 0.89214 1.98431 1.92924 1.74305 1.31031 0.92230 0.91582 0.92229 0.89255 0.89224 0.74452 0.88164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.06 -0.57 5.83 -27.88 -0.16 -0.74 16 3 C 0.04 0.53 6.04 -82.38 -0.50 0.04 16 4 N -0.35 -5.04 10.34 -6.96 -0.07 -5.11 16 5 C 0.07 1.14 5.60 -84.55 -0.47 0.67 16 6 C 0.27 4.37 13.92 -22.47 -0.31 4.05 16 7 N -0.38 -6.43 18.54 41.84 0.78 -5.66 16 8 C 0.43 7.26 5.12 -154.63 -0.79 6.47 16 9 N -0.65 -11.56 2.15 -9.45 -0.02 -11.58 16 10 C 0.32 6.31 4.95 -83.52 -0.41 5.89 16 11 C -0.32 -6.44 8.01 -38.32 -0.31 -6.75 16 12 H 0.13 2.88 7.50 -52.49 -0.39 2.49 16 13 C 0.07 1.44 5.36 -17.20 -0.09 1.35 16 14 N -0.71 -13.96 13.90 55.60 0.77 -13.18 16 15 Si 0.90 15.45 24.29 -169.99 -4.13 11.32 16 16 H -0.26 -4.25 5.24 56.52 0.30 -3.96 16 17 H -0.27 -4.56 7.11 56.52 0.40 -4.16 16 18 H -0.24 -4.14 6.59 56.52 0.37 -3.77 16 19 C -0.29 -5.96 5.88 -104.95 -0.62 -6.58 16 20 C 0.32 7.19 14.06 -22.47 -0.32 6.87 16 21 N -0.52 -12.11 18.54 41.84 0.78 -11.33 16 22 C 0.30 6.47 14.82 -22.48 -0.33 6.14 16 23 N -0.52 -11.74 18.54 41.84 0.78 -10.97 16 24 N -0.44 -7.53 9.06 -9.05 -0.08 -7.61 16 25 C 0.21 3.03 7.28 -17.16 -0.12 2.91 16 26 Cl 0.00 0.05 27.44 -51.86 -1.42 -1.37 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.68 6.89 -51.93 -0.36 0.32 16 32 H 0.41 7.05 6.69 -40.82 -0.27 6.77 16 33 H 0.31 5.33 8.28 -40.82 -0.34 4.99 16 LS Contribution 330.44 15.07 4.98 4.98 Total: -1.00 -24.15 330.44 -3.70 -27.86 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -1.98 Total: 3.17 kcal Atomic # 6 Polarization: 23.57 SS G_CDS: -4.07 Total: 19.49 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: 2.93 Total: -65.45 kcal Atomic # 14 Polarization: 15.45 SS G_CDS: -4.13 Total: 11.32 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -1.42 Total: -1.37 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -24.15 -3.70 -27.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079282.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.212 kcal (2) G-P(sol) polarization free energy of solvation -24.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds