Wall clock time and date at job start Tue Mar 31 2020 15:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47556 * 2 1 4 4 N 1.46899 * 109.47047 * 120.00459 * 2 1 3 5 5 C 1.52998 * 109.47101 * 239.99974 * 2 1 3 6 6 C 1.53007 * 109.47148 * 174.99930 * 5 2 1 7 7 N 1.46497 * 109.47089 * 180.02562 * 6 5 2 8 8 C 1.39787 * 119.99736 * 180.02562 * 7 6 5 9 9 C 1.38725 * 120.10118 * 359.71580 * 8 7 6 10 10 C 1.38281 * 119.98568 * 179.79207 * 9 8 7 11 11 Br 1.89101 * 119.91263 * 180.23482 * 10 9 8 12 12 C 1.38434 * 120.17997 * 0.47276 * 10 9 8 13 13 C 1.38169 * 120.19559 * 359.78230 * 12 10 9 14 14 C 1.38706 * 120.01597 * 359.97438 * 13 12 10 15 15 O 1.35814 * 120.08969 * 179.97438 * 14 13 12 16 16 C 1.34796 * 116.99824 * 354.39782 * 15 14 13 17 17 H 1.07999 * 120.00570 * 5.06524 * 16 15 14 18 18 C 1.38634 * 119.99966 * 185.06255 * 16 15 14 19 19 N 1.31581 * 119.99699 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99895 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47347 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47122 * 120.00379 * 20 18 16 23 23 H 1.48500 * 109.46723 * 239.99921 * 20 18 16 24 24 H 1.09003 * 109.47305 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47363 * 300.00099 * 1 2 3 26 26 H 1.09004 * 109.47153 * 59.99559 * 1 2 3 27 27 H 1.00895 * 111.00266 * 59.99898 * 4 2 1 28 28 H 1.00900 * 111.00032 * 183.95646 * 4 2 1 29 29 H 1.08995 * 109.47539 * 295.00277 * 5 2 1 30 30 H 1.09002 * 109.47113 * 55.00321 * 5 2 1 31 31 H 1.08995 * 109.47184 * 300.00564 * 6 5 2 32 32 H 1.09002 * 109.46794 * 60.00195 * 6 5 2 33 33 H 0.97001 * 119.99867 * 359.97438 * 7 6 5 34 34 H 1.07999 * 120.01008 * 0.03787 * 9 8 7 35 35 H 1.08002 * 119.89945 * 179.77018 * 12 10 9 36 36 H 1.08004 * 119.98843 * 179.97438 * 13 12 10 37 37 H 0.96999 * 119.99582 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0400 -0.7212 -1.2492 6 6 3.5648 -0.6133 -1.3137 7 7 4.0531 -1.3034 -2.5102 8 6 5.4231 -1.3408 -2.7852 9 6 6.3217 -0.7201 -1.9297 10 6 7.6768 -0.7623 -2.2018 11 35 8.9004 0.0787 -1.0308 12 6 8.1398 -1.4144 -3.3318 13 6 7.2510 -2.0306 -4.1918 14 6 5.8904 -1.9976 -3.9240 15 8 5.0154 -2.6023 -4.7686 16 6 5.5204 -3.1165 -5.9077 17 1 6.5871 -3.1101 -6.0768 18 6 4.6706 -3.6536 -6.8622 19 7 3.3710 -3.6610 -6.6564 20 14 5.3705 -4.3668 -8.4405 21 1 6.8498 -4.2386 -8.4283 22 1 4.9992 -5.8010 -8.5429 23 1 4.8187 -3.6283 -9.6047 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.6961 -1.6480 1.2227 28 1 3.0261 -0.6502 1.2559 29 1 1.7516 -1.7715 -1.2057 30 1 1.6054 -0.2617 -2.1370 31 1 3.8532 0.4369 -1.3573 32 1 3.9994 -1.0728 -0.4260 33 1 3.4258 -1.7349 -3.1111 34 1 5.9634 -0.2075 -1.0493 35 1 9.1989 -1.4414 -3.5419 36 1 7.6158 -2.5380 -5.0726 37 1 2.7764 -4.0372 -7.3241 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170891048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:03 Heat of formation + Delta-G solvation = -10.696143 kcal Electronic energy + Delta-G solvation = -19699.810982 eV Core-core repulsion = 16523.393240 eV Total energy + Delta-G solvation = -3176.417742 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.39392 -37.60376 -36.56868 -34.71288 -32.41822 -30.93279 -30.27981 -29.17039 -28.27821 -26.94903 -25.37960 -23.43770 -21.35813 -21.00322 -20.49323 -18.06918 -17.39182 -16.35211 -15.66490 -15.53550 -15.11130 -14.66001 -14.35991 -14.07814 -13.95763 -13.64220 -13.42609 -13.21426 -12.70762 -12.36410 -12.12069 -11.98932 -11.80444 -11.63728 -11.22445 -11.13909 -11.02930 -10.95842 -10.75621 -10.48591 -10.20455 -9.83576 -9.52031 -9.32239 -8.87554 -8.85285 -7.72444 -6.58627 -6.54616 -4.09680 2.01034 2.20738 2.29688 3.06537 3.09031 3.14230 3.84193 3.93006 4.41707 4.47220 4.73705 4.93428 4.95677 5.07395 5.11331 5.32329 5.42086 5.52952 5.64892 5.69342 5.74220 5.82693 6.01021 6.06108 6.06736 6.13493 6.37906 6.45206 6.58510 6.89904 7.01338 7.12834 7.19220 7.30208 7.45953 7.83786 7.95346 8.33556 8.91232 9.57578 10.62438 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.007101 B = 0.005259 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3942.012593 B = 5323.064571 C = 9160.229526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.091 3.909 3 H 0.082 0.918 4 N -0.846 5.846 5 C -0.167 4.167 6 C 0.133 3.867 7 N -0.745 5.745 8 C 0.162 3.838 9 C -0.141 4.141 10 C -0.129 4.129 11 Br -0.091 7.091 12 C -0.088 4.088 13 C -0.204 4.204 14 C 0.111 3.889 15 O -0.177 6.177 16 C -0.386 4.386 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.339 0.661 28 H 0.342 0.658 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.409 0.591 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.135 0.865 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.121 6.187 10.753 12.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 H 0.100 0.900 4 N -0.376 5.376 5 C -0.207 4.207 6 C 0.007 3.993 7 N -0.379 5.379 8 C 0.060 3.940 9 C -0.167 4.167 10 C -0.209 4.209 11 Br -0.007 7.007 12 C -0.110 4.110 13 C -0.226 4.226 14 C 0.055 3.945 15 O -0.081 6.081 16 C -0.462 4.462 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.766 3.234 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.201 1.201 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.245 0.755 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.153 0.847 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.656 7.023 11.639 13.695 hybrid contribution 0.449 -1.368 -2.048 2.503 sum 2.105 5.656 9.591 11.332 Atomic orbital electron populations 1.21791 0.94351 1.02067 1.01979 1.21375 0.95572 0.98156 0.87062 0.90028 1.58999 1.16525 1.21418 1.40620 1.22632 0.95449 1.02093 1.00549 1.21141 0.93278 0.96466 0.88374 1.44285 1.03802 1.62524 1.27301 1.16913 0.84317 0.98986 0.93786 1.19931 0.90659 1.05495 1.00629 1.20769 0.92138 1.09464 0.98495 1.96474 1.60343 1.80331 1.63562 1.20492 0.98868 0.98274 0.93335 1.20866 0.91970 1.07059 1.02678 1.19001 0.89809 0.94494 0.91157 1.83873 1.33068 1.62673 1.28505 1.21359 0.93668 1.38156 0.92983 0.88932 1.25270 0.95131 0.97165 0.98914 1.70031 1.02188 1.42426 1.35124 0.85636 0.79065 0.78638 0.80075 1.19015 1.20152 1.20137 0.92753 0.91957 0.92136 0.84814 0.84455 0.91231 0.90604 0.93003 0.93461 0.75455 0.86270 0.86756 0.84737 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.49 37.16 0.35 -0.96 16 2 C 0.09 0.89 3.41 -67.72 -0.23 0.66 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 N -0.85 -8.12 9.18 -4.67 -0.04 -8.16 16 5 C -0.17 -1.93 4.97 -26.73 -0.13 -2.06 16 6 C 0.13 1.79 4.68 -4.04 -0.02 1.77 16 7 N -0.74 -13.32 5.73 -58.49 -0.33 -13.66 16 8 C 0.16 3.26 6.67 -83.57 -0.56 2.70 16 9 C -0.14 -2.56 9.05 -39.39 -0.36 -2.91 16 10 C -0.13 -2.31 6.22 -39.49 -0.25 -2.55 16 11 Br -0.09 -1.37 33.69 -68.01 -2.29 -3.66 16 12 C -0.09 -1.64 9.77 -39.53 -0.39 -2.02 16 13 C -0.20 -4.30 9.16 -39.43 -0.36 -4.66 16 14 C 0.11 2.55 6.67 -38.93 -0.26 2.29 16 15 O -0.18 -4.69 9.00 -0.05 0.00 -4.69 16 16 C -0.39 -10.23 9.49 30.88 0.29 -9.94 16 17 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 18 C 0.04 1.03 5.49 -17.51 -0.10 0.94 16 19 N -0.86 -23.99 13.67 55.48 0.76 -23.24 16 20 Si 0.94 19.84 29.55 -169.99 -5.02 14.82 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.34 3.06 9.00 -39.29 -0.35 2.71 16 28 H 0.34 3.17 7.55 -39.29 -0.30 2.88 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.69 7.94 -51.93 -0.41 0.28 16 32 H 0.05 0.60 6.69 -51.93 -0.35 0.26 16 33 H 0.41 8.02 7.84 -40.82 -0.32 7.70 16 34 H 0.12 1.91 6.73 -52.49 -0.35 1.56 16 35 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.14 2.81 5.64 -52.48 -0.30 2.51 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 329.04 15.07 4.96 4.96 Total: -1.00 -27.75 329.04 -8.72 -36.48 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -4.75 Total: 13.91 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -2.00 Total: -16.75 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.38 Total: -45.06 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: 0.00 Total: -4.69 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 35 Polarization: -1.37 SS G_CDS: -2.29 Total: -3.66 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.75 -8.72 -36.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170891048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.780 kcal (2) G-P(sol) polarization free energy of solvation -27.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds