Wall clock time and date at job start Tue Mar 31 2020 15:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47556 * 2 1 4 4 N 1.46899 * 109.47047 * 120.00459 * 2 1 3 5 5 C 1.52998 * 109.47101 * 239.99974 * 2 1 3 6 6 C 1.53007 * 109.47148 * 174.99930 * 5 2 1 7 7 N 1.46497 * 109.47089 * 180.02562 * 6 5 2 8 8 C 1.39787 * 119.99736 * 180.02562 * 7 6 5 9 9 C 1.38725 * 120.10118 * 359.71580 * 8 7 6 10 10 C 1.38281 * 119.98568 * 179.79207 * 9 8 7 11 11 Br 1.89101 * 119.91263 * 180.23482 * 10 9 8 12 12 C 1.38434 * 120.17997 * 0.47276 * 10 9 8 13 13 C 1.38169 * 120.19559 * 359.78230 * 12 10 9 14 14 C 1.38706 * 120.01597 * 359.97438 * 13 12 10 15 15 O 1.35814 * 120.08969 * 179.97438 * 14 13 12 16 16 C 1.34796 * 116.99824 * 354.39782 * 15 14 13 17 17 H 1.07999 * 120.00570 * 5.06524 * 16 15 14 18 18 C 1.38634 * 119.99966 * 185.06255 * 16 15 14 19 19 N 1.31581 * 119.99699 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99895 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47347 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47122 * 120.00379 * 20 18 16 23 23 H 1.48500 * 109.46723 * 239.99921 * 20 18 16 24 24 H 1.09003 * 109.47305 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47363 * 300.00099 * 1 2 3 26 26 H 1.09004 * 109.47153 * 59.99559 * 1 2 3 27 27 H 1.00895 * 111.00266 * 59.99898 * 4 2 1 28 28 H 1.00900 * 111.00032 * 183.95646 * 4 2 1 29 29 H 1.08995 * 109.47539 * 295.00277 * 5 2 1 30 30 H 1.09002 * 109.47113 * 55.00321 * 5 2 1 31 31 H 1.08995 * 109.47184 * 300.00564 * 6 5 2 32 32 H 1.09002 * 109.46794 * 60.00195 * 6 5 2 33 33 H 0.97001 * 119.99867 * 359.97438 * 7 6 5 34 34 H 1.07999 * 120.01008 * 0.03787 * 9 8 7 35 35 H 1.08002 * 119.89945 * 179.77018 * 12 10 9 36 36 H 1.08004 * 119.98843 * 179.97438 * 13 12 10 37 37 H 0.96999 * 119.99582 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0400 -0.7212 -1.2492 6 6 3.5648 -0.6133 -1.3137 7 7 4.0531 -1.3034 -2.5102 8 6 5.4231 -1.3408 -2.7852 9 6 6.3217 -0.7201 -1.9297 10 6 7.6768 -0.7623 -2.2018 11 35 8.9004 0.0787 -1.0308 12 6 8.1398 -1.4144 -3.3318 13 6 7.2510 -2.0306 -4.1918 14 6 5.8904 -1.9976 -3.9240 15 8 5.0154 -2.6023 -4.7686 16 6 5.5204 -3.1165 -5.9077 17 1 6.5871 -3.1101 -6.0768 18 6 4.6706 -3.6536 -6.8622 19 7 3.3710 -3.6610 -6.6564 20 14 5.3705 -4.3668 -8.4405 21 1 6.8498 -4.2386 -8.4283 22 1 4.9992 -5.8010 -8.5429 23 1 4.8187 -3.6283 -9.6047 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.6961 -1.6480 1.2227 28 1 3.0261 -0.6502 1.2559 29 1 1.7516 -1.7715 -1.2057 30 1 1.6054 -0.2617 -2.1370 31 1 3.8532 0.4369 -1.3573 32 1 3.9994 -1.0728 -0.4260 33 1 3.4258 -1.7349 -3.1111 34 1 5.9634 -0.2075 -1.0493 35 1 9.1989 -1.4414 -3.5419 36 1 7.6158 -2.5380 -5.0726 37 1 2.7764 -4.0372 -7.3241 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170891048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:02 Heat of formation + Delta-G solvation = -28.727617 kcal Electronic energy + Delta-G solvation = -19700.592886 eV Core-core repulsion = 16523.393240 eV Total energy + Delta-G solvation = -3177.199646 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.00556 -38.79407 -38.04007 -35.99656 -34.29374 -32.41181 -31.54828 -30.03248 -29.70105 -28.33994 -27.22727 -24.66950 -22.82368 -22.46243 -21.46554 -19.83996 -19.05898 -17.37355 -17.20555 -16.79387 -16.32871 -16.20406 -15.68186 -15.54585 -15.38690 -15.04842 -14.77854 -14.42470 -14.25628 -13.62132 -13.59382 -13.35448 -12.79401 -12.77518 -12.70678 -12.60956 -12.33982 -12.11211 -12.07871 -11.79139 -11.58557 -11.36789 -11.09454 -10.79490 -10.67936 -9.65884 -9.29483 -8.46928 -8.13169 -6.08409 0.42646 0.64534 0.83006 1.36900 1.42753 1.53356 2.16274 2.55382 2.76601 3.12008 3.38546 3.67838 3.77628 4.00107 4.05154 4.16330 4.27259 4.41926 4.48944 4.51628 4.58663 4.77828 4.83686 4.87376 4.98676 4.99819 5.07719 5.21962 5.25765 5.31946 5.42663 5.57440 5.86711 5.99179 6.24200 6.47605 6.57255 6.77121 6.99400 7.76647 8.75502 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.007101 B = 0.005259 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3942.012593 B = 5323.064571 C = 9160.229526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.098 3.902 3 H 0.086 0.914 4 N -0.846 5.846 5 C -0.158 4.158 6 C 0.131 3.869 7 N -0.748 5.748 8 C 0.158 3.842 9 C -0.138 4.138 10 C -0.118 4.118 11 Br -0.051 7.051 12 C -0.096 4.096 13 C -0.203 4.203 14 C 0.069 3.931 15 O -0.219 6.219 16 C -0.406 4.406 17 H 0.100 0.900 18 C -0.018 4.018 19 N -0.915 5.915 20 Si 1.012 2.988 21 H -0.253 1.253 22 H -0.271 1.271 23 H -0.271 1.271 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.343 0.657 28 H 0.345 0.655 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.398 0.602 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.129 0.871 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 7.258 12.217 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.015 4.015 3 H 0.104 0.896 4 N -0.377 5.377 5 C -0.198 4.198 6 C 0.008 3.992 7 N -0.380 5.380 8 C 0.054 3.946 9 C -0.163 4.163 10 C -0.198 4.198 11 Br 0.033 6.967 12 C -0.118 4.118 13 C -0.225 4.225 14 C 0.016 3.984 15 O -0.125 6.125 16 C -0.482 4.482 17 H 0.117 0.883 18 C -0.216 4.216 19 N -0.553 5.553 20 Si 0.832 3.168 21 H -0.176 1.176 22 H -0.196 1.196 23 H -0.196 1.196 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.231 0.769 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.147 0.853 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.235 8.131 13.171 15.813 hybrid contribution 0.134 -1.515 -2.196 2.671 sum 3.369 6.617 10.975 13.251 Atomic orbital electron populations 1.21777 0.93728 1.02150 1.02369 1.21331 0.96022 0.98016 0.86103 0.89622 1.59015 1.16777 1.21736 1.40127 1.22580 0.94074 1.01869 1.01260 1.21365 0.94510 0.96380 0.86988 1.44533 1.02916 1.62362 1.28216 1.17199 0.85692 0.98421 0.93240 1.20230 0.90532 1.04762 1.00821 1.21141 0.92972 1.07393 0.98286 1.96527 1.58781 1.79398 1.61954 1.20718 0.99724 0.98108 0.93215 1.21004 0.91843 1.06733 1.02893 1.19503 0.90515 0.96241 0.92137 1.83849 1.34325 1.65042 1.29334 1.21780 0.94255 1.38482 0.93659 0.88269 1.26405 0.95418 0.97520 1.02233 1.70160 1.03674 1.44833 1.36643 0.84602 0.78910 0.77778 0.75462 1.17621 1.19610 1.19643 0.92861 0.91500 0.91810 0.84428 0.84155 0.91961 0.91451 0.92233 0.92113 0.76856 0.83731 0.84261 0.85320 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.49 71.98 0.68 -1.73 16 2 C 0.10 1.77 3.41 44.91 0.15 1.93 16 3 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 4 N -0.85 -14.69 9.18 -168.69 -1.55 -16.24 16 5 C -0.16 -3.54 4.97 30.60 0.15 -3.38 16 6 C 0.13 3.39 4.68 86.38 0.40 3.79 16 7 N -0.75 -27.05 5.73 -338.95 -1.94 -28.99 16 8 C 0.16 6.34 6.67 38.30 0.26 6.60 16 9 C -0.14 -4.71 9.05 22.40 0.20 -4.50 16 10 C -0.12 -3.91 6.22 22.33 0.14 -3.78 16 11 Br -0.05 -1.35 33.69 -20.37 -0.69 -2.04 16 12 C -0.10 -3.40 9.77 22.30 0.22 -3.18 16 13 C -0.20 -8.62 9.16 22.37 0.20 -8.42 16 14 C 0.07 3.26 6.67 22.69 0.15 3.41 16 15 O -0.22 -12.19 9.00 -23.10 -0.21 -12.40 16 16 C -0.41 -22.44 9.49 67.91 0.64 -21.80 16 17 H 0.10 5.09 5.21 -2.91 -0.02 5.08 16 18 C -0.02 -0.97 5.49 84.82 0.47 -0.50 16 19 N -0.91 -53.34 13.67 21.61 0.30 -53.04 16 20 Si 1.01 41.59 29.55 68.60 2.03 43.61 16 21 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 24 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.34 5.66 9.00 -89.70 -0.81 4.86 16 28 H 0.34 5.63 7.55 -89.69 -0.68 4.96 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.47 7.94 -2.39 -0.02 1.45 16 32 H 0.06 1.42 6.69 -2.39 -0.02 1.41 16 33 H 0.40 16.33 7.84 -92.71 -0.73 15.60 16 34 H 0.15 4.16 6.73 -2.91 -0.02 4.14 16 35 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 36 H 0.13 5.49 5.64 -2.91 -0.02 5.47 16 37 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -61.80 329.04 0.53 -61.27 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: -1.09 Total: 39.39 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 3.67 Total: -31.56 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -3.19 Total: -98.27 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.21 Total: -12.40 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 35 Polarization: -1.35 SS G_CDS: -0.69 Total: -2.04 kcal Total: -61.80 0.53 -61.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170891048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.545 kcal (2) G-P(sol) polarization free energy of solvation -61.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds