Wall clock time and date at job start Tue Mar 31 2020 15:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46672 * 2 1 4 4 N 1.46892 * 109.47127 * 240.00378 * 2 1 3 5 5 C 1.52995 * 109.47089 * 120.00009 * 2 1 3 6 6 N 1.46505 * 109.46834 * 180.02562 * 5 2 1 7 7 C 1.39782 * 119.99927 * 180.02562 * 6 5 2 8 8 C 1.38741 * 120.09729 * 0.02562 * 7 6 5 9 9 C 1.38285 * 119.97755 * 179.97438 * 8 7 6 10 10 Br 1.89101 * 119.90187 * 180.02562 * 9 8 7 11 11 C 1.38427 * 120.18903 * 0.02562 * 9 8 7 12 12 C 1.38172 * 120.19504 * 359.68409 * 11 9 8 13 13 C 1.38715 * 120.01375 * 0.59335 * 12 11 9 14 14 O 1.35812 * 120.09006 * 179.70256 * 13 12 11 15 15 C 1.34791 * 116.99830 * 354.39805 * 14 13 12 16 16 H 1.07998 * 120.00101 * 5.06954 * 15 14 13 17 17 C 1.38630 * 119.99700 * 185.06004 * 15 14 13 18 18 N 1.31578 * 119.99977 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99891 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47057 * 90.00596 * 19 17 15 21 21 H 1.48493 * 109.47575 * 210.00286 * 19 17 15 22 22 H 1.48496 * 109.47338 * 330.00612 * 19 17 15 23 23 H 1.08999 * 109.47165 * 299.99625 * 1 2 3 24 24 H 1.09001 * 109.47277 * 60.00186 * 1 2 3 25 25 H 1.08996 * 109.46436 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46653 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47118 * 299.99912 * 3 2 1 28 28 H 1.08999 * 109.47020 * 60.00285 * 3 2 1 29 29 H 1.00901 * 111.00518 * 59.99772 * 4 2 1 30 30 H 1.00907 * 111.00234 * 183.95210 * 4 2 1 31 31 H 1.08996 * 109.47526 * 60.00613 * 5 2 1 32 32 H 1.09007 * 109.47222 * 299.99964 * 5 2 1 33 33 H 0.97000 * 120.00371 * 359.97438 * 6 5 2 34 34 H 1.07993 * 120.00696 * 359.95650 * 8 7 6 35 35 H 1.07998 * 119.90093 * 179.97438 * 11 9 8 36 36 H 1.07995 * 119.99542 * 180.29853 * 12 11 9 37 37 H 0.97000 * 119.99670 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0400 -0.7212 1.2492 6 7 3.5051 -0.7207 1.2495 7 6 4.2040 -1.3263 2.2976 8 6 3.5124 -1.9290 3.3384 9 6 4.2064 -2.5279 4.3738 10 35 3.2615 -3.3494 5.7910 11 6 5.5907 -2.5277 4.3758 12 6 6.2870 -1.9349 3.3400 13 6 5.5993 -1.3267 2.3001 14 8 6.2822 -0.7383 1.2843 15 6 7.6235 -0.6775 1.4032 16 1 8.1141 -1.1579 2.2368 17 6 8.3732 0.0015 0.4552 18 7 7.7754 0.5870 -0.5603 19 14 10.2319 0.0865 0.6202 20 1 10.8447 -1.0682 -0.0843 21 1 10.7251 1.3515 0.0189 22 1 10.6038 0.0435 2.0572 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6962 -0.2349 -2.0385 30 1 3.0263 -0.7625 -1.1909 31 1 1.6768 -1.7489 1.2492 32 1 1.6767 -0.2074 2.1393 33 1 3.9901 -0.3007 0.5219 34 1 2.4325 -1.9301 3.3401 35 1 6.1279 -2.9965 5.1869 36 1 7.3669 -1.9409 3.3424 37 1 8.3000 1.0625 -1.2233 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171194705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:54 Heat of formation + Delta-G solvation = -3.969556 kcal Electronic energy + Delta-G solvation = -20229.657317 eV Core-core repulsion = 17053.531262 eV Total energy + Delta-G solvation = -3176.126056 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.43220 -38.00135 -36.50206 -33.99159 -32.36605 -30.82212 -29.59366 -28.91180 -27.85694 -27.25546 -25.34721 -25.18126 -21.58430 -20.98778 -19.27765 -18.02096 -17.47141 -16.15307 -15.65639 -15.25304 -14.89465 -14.62753 -14.07522 -13.99321 -13.78848 -13.46999 -13.12062 -12.88568 -12.68062 -12.50515 -12.17389 -11.90210 -11.83227 -11.78089 -11.19019 -11.10756 -11.07132 -10.80031 -10.71718 -10.48163 -10.18536 -9.80229 -9.49037 -9.27187 -8.84770 -8.63641 -7.67839 -6.54773 -6.51103 -4.07289 2.05421 2.25340 2.33380 3.08443 3.10297 3.14467 3.88192 4.00928 4.44485 4.53418 4.77309 4.98474 5.06186 5.10306 5.13679 5.57351 5.67406 5.68713 5.75847 5.78044 5.79799 5.96613 6.05973 6.08766 6.11919 6.28672 6.42973 6.49393 6.63073 6.93890 7.15675 7.22171 7.23628 7.49024 7.53017 7.87044 7.99466 8.35899 8.93499 9.60212 10.64292 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.008251 B = 0.005519 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.574156 B = 5071.927115 C = 8275.044472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.103 3.897 3 C -0.183 4.183 4 N -0.838 5.838 5 C 0.144 3.856 6 N -0.741 5.741 7 C 0.166 3.834 8 C -0.141 4.141 9 C -0.127 4.127 10 Br -0.092 7.092 11 C -0.090 4.090 12 C -0.204 4.204 13 C 0.110 3.890 14 O -0.178 6.178 15 C -0.384 4.384 16 H 0.092 0.908 17 C 0.040 3.960 18 N -0.864 5.864 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.267 1.267 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.338 0.662 30 H 0.349 0.651 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.405 0.595 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.134 0.866 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.694 -2.216 5.064 12.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.010 3.990 3 C -0.242 4.242 4 N -0.370 5.370 5 C 0.019 3.981 6 N -0.376 5.376 7 C 0.064 3.936 8 C -0.167 4.167 9 C -0.207 4.207 10 Br -0.008 7.008 11 C -0.111 4.111 12 C -0.225 4.225 13 C 0.055 3.945 14 O -0.082 6.082 15 C -0.461 4.461 16 H 0.110 0.890 17 C -0.164 4.164 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.150 0.850 30 H 0.163 0.837 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.242 0.758 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.152 0.848 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.645 -2.916 5.458 13.187 hybrid contribution 1.896 1.305 -0.654 2.392 sum -9.749 -1.611 4.804 10.987 Atomic orbital electron populations 1.21754 0.93371 1.02531 1.01692 1.20991 0.95387 0.91549 0.91071 1.22645 1.02454 0.97135 1.01986 1.58922 1.17397 1.57187 1.03464 1.21233 0.81384 0.99768 0.95734 1.44261 1.03929 1.64279 1.25164 1.16891 0.87807 0.98454 0.90492 1.19946 0.98437 1.04048 0.94253 1.20769 0.93732 1.10053 0.96149 1.96469 1.76367 1.81045 1.46940 1.20477 0.91539 1.00543 0.98576 1.20856 1.00437 1.05318 0.95907 1.18998 0.89721 0.95876 0.89912 1.83860 1.20920 1.67506 1.35936 1.21292 0.78330 1.34930 1.11513 0.89041 1.25240 1.00445 0.95651 0.95102 1.70011 1.36288 1.32163 1.11454 0.85713 0.80656 0.78161 0.78962 1.19880 1.20334 1.19162 0.92131 0.92554 0.91684 0.91658 0.92795 0.92051 0.84982 0.83672 0.92163 0.92766 0.75783 0.86197 0.86822 0.84805 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.77 37.16 0.33 -1.05 16 2 C 0.10 1.27 0.97 -131.60 -0.13 1.14 16 3 C -0.18 -2.30 8.59 37.16 0.32 -1.98 16 4 N -0.84 -10.79 8.88 0.74 0.01 -10.79 16 5 C 0.14 2.07 4.02 -4.04 -0.02 2.06 16 6 N -0.74 -13.24 5.14 -58.48 -0.30 -13.54 16 7 C 0.17 3.35 6.67 -83.57 -0.56 2.79 16 8 C -0.14 -2.59 9.05 -39.38 -0.36 -2.94 16 9 C -0.13 -2.30 6.22 -39.49 -0.25 -2.55 16 10 Br -0.09 -1.41 33.69 -68.01 -2.29 -3.70 16 11 C -0.09 -1.68 9.77 -39.54 -0.39 -2.07 16 12 C -0.20 -4.30 9.16 -39.43 -0.36 -4.66 16 13 C 0.11 2.53 6.67 -38.93 -0.26 2.27 16 14 O -0.18 -4.67 9.00 -0.03 0.00 -4.67 16 15 C -0.38 -10.16 9.49 30.88 0.29 -9.87 16 16 H 0.09 2.26 5.21 -52.49 -0.27 1.99 16 17 C 0.04 1.04 5.49 -17.52 -0.10 0.94 16 18 N -0.86 -23.78 13.67 55.48 0.76 -23.02 16 19 Si 0.94 19.84 29.55 -169.99 -5.02 14.81 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.98 6.86 -51.93 -0.36 0.62 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.34 3.72 9.00 -39.29 -0.35 3.37 16 30 H 0.35 5.12 7.61 -39.29 -0.30 4.82 16 31 H 0.06 0.89 7.95 -51.93 -0.41 0.48 16 32 H 0.05 0.75 7.95 -51.92 -0.41 0.34 16 33 H 0.41 7.81 5.64 -40.82 -0.23 7.58 16 34 H 0.12 1.98 6.73 -52.49 -0.35 1.63 16 35 H 0.11 1.89 8.06 -52.49 -0.42 1.46 16 36 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -27.24 325.79 -8.07 -35.30 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -4.66 Total: 16.62 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -1.47 Total: -15.92 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.46 Total: -47.35 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: 0.00 Total: -4.67 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 35 Polarization: -1.41 SS G_CDS: -2.29 Total: -3.70 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.24 -8.07 -35.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171194705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.335 kcal (2) G-P(sol) polarization free energy of solvation -27.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds