Wall clock time and date at job start Tue Mar 31 2020 15:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46672 * 2 1 4 4 N 1.46892 * 109.47127 * 240.00378 * 2 1 3 5 5 C 1.52995 * 109.47089 * 120.00009 * 2 1 3 6 6 N 1.46505 * 109.46834 * 180.02562 * 5 2 1 7 7 C 1.39782 * 119.99927 * 180.02562 * 6 5 2 8 8 C 1.38741 * 120.09729 * 0.02562 * 7 6 5 9 9 C 1.38285 * 119.97755 * 179.97438 * 8 7 6 10 10 Br 1.89101 * 119.90187 * 180.02562 * 9 8 7 11 11 C 1.38427 * 120.18903 * 0.02562 * 9 8 7 12 12 C 1.38172 * 120.19504 * 359.68409 * 11 9 8 13 13 C 1.38715 * 120.01375 * 0.59335 * 12 11 9 14 14 O 1.35812 * 120.09006 * 179.70256 * 13 12 11 15 15 C 1.34791 * 116.99830 * 354.39805 * 14 13 12 16 16 H 1.07998 * 120.00101 * 5.06954 * 15 14 13 17 17 C 1.38630 * 119.99700 * 185.06004 * 15 14 13 18 18 N 1.31578 * 119.99977 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99891 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47057 * 90.00596 * 19 17 15 21 21 H 1.48493 * 109.47575 * 210.00286 * 19 17 15 22 22 H 1.48496 * 109.47338 * 330.00612 * 19 17 15 23 23 H 1.08999 * 109.47165 * 299.99625 * 1 2 3 24 24 H 1.09001 * 109.47277 * 60.00186 * 1 2 3 25 25 H 1.08996 * 109.46436 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46653 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47118 * 299.99912 * 3 2 1 28 28 H 1.08999 * 109.47020 * 60.00285 * 3 2 1 29 29 H 1.00901 * 111.00518 * 59.99772 * 4 2 1 30 30 H 1.00907 * 111.00234 * 183.95210 * 4 2 1 31 31 H 1.08996 * 109.47526 * 60.00613 * 5 2 1 32 32 H 1.09007 * 109.47222 * 299.99964 * 5 2 1 33 33 H 0.97000 * 120.00371 * 359.97438 * 6 5 2 34 34 H 1.07993 * 120.00696 * 359.95650 * 8 7 6 35 35 H 1.07998 * 119.90093 * 179.97438 * 11 9 8 36 36 H 1.07995 * 119.99542 * 180.29853 * 12 11 9 37 37 H 0.97000 * 119.99670 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0400 -0.7212 1.2492 6 7 3.5051 -0.7207 1.2495 7 6 4.2040 -1.3263 2.2976 8 6 3.5124 -1.9290 3.3384 9 6 4.2064 -2.5279 4.3738 10 35 3.2615 -3.3494 5.7910 11 6 5.5907 -2.5277 4.3758 12 6 6.2870 -1.9349 3.3400 13 6 5.5993 -1.3267 2.3001 14 8 6.2822 -0.7383 1.2843 15 6 7.6235 -0.6775 1.4032 16 1 8.1141 -1.1579 2.2368 17 6 8.3732 0.0015 0.4552 18 7 7.7754 0.5870 -0.5603 19 14 10.2319 0.0865 0.6202 20 1 10.8447 -1.0682 -0.0843 21 1 10.7251 1.3515 0.0189 22 1 10.6038 0.0435 2.0572 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6962 -0.2349 -2.0385 30 1 3.0263 -0.7625 -1.1909 31 1 1.6768 -1.7489 1.2492 32 1 1.6767 -0.2074 2.1393 33 1 3.9901 -0.3007 0.5219 34 1 2.4325 -1.9301 3.3401 35 1 6.1279 -2.9965 5.1869 36 1 7.3669 -1.9409 3.3424 37 1 8.3000 1.0625 -1.2233 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171194705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:53 Heat of formation + Delta-G solvation = -21.372393 kcal Electronic energy + Delta-G solvation = -20230.411961 eV Core-core repulsion = 17053.531262 eV Total energy + Delta-G solvation = -3176.880699 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.01914 -39.23819 -38.11383 -35.36821 -34.24552 -32.33804 -30.71314 -30.27094 -29.37054 -28.23182 -27.21753 -26.46296 -23.18317 -22.51558 -20.41799 -19.76840 -19.08430 -17.57326 -17.06284 -16.46207 -16.30202 -16.17639 -15.63221 -15.60518 -15.19948 -14.87314 -14.43239 -14.36660 -14.06214 -13.73663 -13.56865 -13.31268 -13.05577 -12.74155 -12.73492 -12.62927 -12.37701 -12.15548 -12.06024 -11.84651 -11.61799 -11.33826 -11.07541 -10.77140 -10.65426 -9.67692 -9.26231 -8.44795 -8.08110 -6.05484 0.45794 0.68064 0.85235 1.37716 1.44370 1.52782 2.17731 2.60551 2.79331 3.14867 3.41057 3.50068 3.73225 4.02856 4.09969 4.11936 4.29559 4.53569 4.60639 4.65152 4.71560 4.83028 4.86499 4.89077 4.97402 5.02765 5.05328 5.18083 5.24573 5.36905 5.45467 5.60082 5.89183 6.01301 6.16771 6.48835 6.53691 6.80900 7.01658 7.79078 8.77111 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.008251 B = 0.005519 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.574156 B = 5071.927115 C = 8275.044472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.106 3.894 3 C -0.177 4.177 4 N -0.842 5.842 5 C 0.141 3.859 6 N -0.741 5.741 7 C 0.162 3.838 8 C -0.139 4.139 9 C -0.117 4.117 10 Br -0.053 7.053 11 C -0.097 4.097 12 C -0.204 4.204 13 C 0.070 3.930 14 O -0.217 6.217 15 C -0.405 4.405 16 H 0.099 0.901 17 C -0.017 4.017 18 N -0.912 5.912 19 Si 1.010 2.990 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.256 1.256 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.348 0.652 30 H 0.335 0.665 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.396 0.604 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.101 -2.925 6.691 14.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.013 3.987 3 C -0.237 4.237 4 N -0.373 5.373 5 C 0.017 3.983 6 N -0.373 5.373 7 C 0.058 3.942 8 C -0.165 4.165 9 C -0.197 4.197 10 Br 0.032 6.968 11 C -0.119 4.119 12 C -0.225 4.225 13 C 0.017 3.983 14 O -0.124 6.124 15 C -0.481 4.481 16 H 0.116 0.884 17 C -0.215 4.215 18 N -0.551 5.551 19 Si 0.831 3.169 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.180 1.180 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.162 0.838 30 H 0.148 0.852 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.231 0.769 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.119 -3.650 7.121 15.367 hybrid contribution 2.066 1.386 -0.949 2.662 sum -11.053 -2.264 6.173 12.861 Atomic orbital electron populations 1.21725 0.91020 1.02959 1.03049 1.21033 0.96932 0.90788 0.89909 1.22591 1.00313 0.97722 1.03053 1.58962 1.16389 1.57606 1.04349 1.21456 0.79187 1.00222 0.97403 1.44446 1.05308 1.63409 1.24172 1.17172 0.87290 0.98290 0.91421 1.20225 0.99512 1.03235 0.93526 1.21128 0.94012 1.07966 0.96605 1.96517 1.75343 1.80199 1.44787 1.20697 0.92075 1.00573 0.98579 1.20995 1.00468 1.04891 0.96126 1.19477 0.91009 0.97318 0.90538 1.83839 1.20871 1.69826 1.37843 1.21711 0.79078 1.35332 1.12022 0.88409 1.26353 1.05279 0.95195 0.94639 1.70143 1.38082 1.34097 1.12741 0.84684 0.74526 0.78277 0.79429 1.19138 1.19919 1.17976 0.90755 0.91287 0.91690 0.94848 0.91284 0.91415 0.83806 0.85174 0.92152 0.91603 0.76894 0.83919 0.84355 0.85351 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.77 71.98 0.63 -1.67 16 2 C 0.11 2.51 0.97 3.53 0.00 2.51 16 3 C -0.18 -4.38 8.59 71.98 0.62 -3.76 16 4 N -0.84 -21.48 8.88 -151.57 -1.35 -22.83 16 5 C 0.14 3.92 4.02 86.38 0.35 4.27 16 6 N -0.74 -26.95 5.14 -338.93 -1.74 -28.69 16 7 C 0.16 6.58 6.67 38.30 0.26 6.83 16 8 C -0.14 -4.88 9.05 22.40 0.20 -4.68 16 9 C -0.12 -3.97 6.22 22.33 0.14 -3.83 16 10 Br -0.05 -1.44 33.69 -20.37 -0.69 -2.13 16 11 C -0.10 -3.51 9.77 22.30 0.22 -3.29 16 12 C -0.20 -8.69 9.16 22.37 0.20 -8.49 16 13 C 0.07 3.29 6.67 22.69 0.15 3.45 16 14 O -0.22 -12.03 9.00 -23.03 -0.21 -12.24 16 15 C -0.41 -22.37 9.49 67.91 0.64 -21.72 16 16 H 0.10 5.02 5.21 -2.91 -0.02 5.01 16 17 C -0.02 -0.89 5.49 84.82 0.47 -0.43 16 18 N -0.91 -52.71 13.67 21.61 0.30 -52.41 16 19 Si 1.01 41.61 29.55 68.60 2.03 43.63 16 20 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 22 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.03 1.03 6.86 -2.39 -0.02 1.02 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.35 7.46 9.00 -89.69 -0.81 6.66 16 30 H 0.34 10.24 7.61 -89.69 -0.68 9.56 16 31 H 0.06 1.69 7.95 -2.39 -0.02 1.67 16 32 H 0.07 1.69 7.95 -2.38 -0.02 1.67 16 33 H 0.40 16.13 5.64 -92.71 -0.52 15.61 16 34 H 0.14 4.30 6.73 -2.91 -0.02 4.28 16 35 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 36 H 0.13 5.51 5.64 -2.91 -0.02 5.49 16 37 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -60.90 325.79 1.34 -59.56 By element: Atomic # 1 Polarization: 46.80 SS G_CDS: -0.89 Total: 45.91 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 3.88 Total: -30.82 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -2.79 Total: -103.92 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.21 Total: -12.24 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 35 Polarization: -1.44 SS G_CDS: -0.69 Total: -2.13 kcal Total: -60.90 1.34 -59.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171194705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.189 kcal (2) G-P(sol) polarization free energy of solvation -60.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds