Wall clock time and date at job start Tue Mar 31 2020 15:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46951 * 2 1 4 4 C 1.52995 * 109.46896 * 184.00774 * 3 2 1 5 5 N 1.46502 * 109.47090 * 181.59249 * 4 3 2 6 6 C 1.36885 * 119.99997 * 256.36841 * 5 4 3 7 7 H 1.07993 * 119.99801 * 92.05670 * 6 5 4 8 8 C 1.39006 * 119.99691 * 272.05693 * 6 5 4 9 9 N 1.31396 * 119.99849 * 109.68960 * 8 6 5 10 10 Si 1.86792 * 119.99923 * 289.68951 * 8 6 5 11 11 H 1.48501 * 109.47252 * 95.02841 * 10 8 6 12 12 H 1.48493 * 109.47363 * 215.02726 * 10 8 6 13 13 H 1.48498 * 109.47542 * 335.03024 * 10 8 6 14 14 C 1.34773 * 120.00230 * 76.36077 * 5 4 3 15 15 O 1.21751 * 120.00444 * 247.89418 * 14 5 4 16 16 C 1.46458 * 119.99821 * 67.88952 * 14 5 4 17 17 C 1.38048 * 126.23818 * 110.82008 * 16 14 5 18 18 C 1.39731 * 107.11096 * 180.02562 * 17 16 14 19 19 C 1.35646 * 107.89705 * 0.02562 * 18 17 16 20 20 Br 1.89103 * 125.56730 * 180.02562 * 19 18 17 21 21 N 1.35625 * 108.86347 * 359.97438 * 19 18 17 22 22 C 1.46497 * 125.69942 * 179.97438 * 21 19 18 23 23 H 1.09006 * 109.47431 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47590 * 300.00090 * 1 2 3 25 25 H 1.09008 * 109.47013 * 60.00468 * 1 2 3 26 26 H 1.09003 * 109.47098 * 240.00479 * 2 1 3 27 27 H 1.08992 * 109.47016 * 119.99871 * 2 1 3 28 28 H 1.09002 * 109.46849 * 64.00928 * 3 2 1 29 29 H 1.08997 * 109.46839 * 304.00868 * 3 2 1 30 30 H 1.08996 * 109.47510 * 61.59145 * 4 3 2 31 31 H 1.09000 * 109.47360 * 301.58732 * 4 3 2 32 32 H 0.97004 * 120.00098 * 184.94730 * 9 8 6 33 33 H 1.07997 * 126.44328 * 0.04393 * 17 16 14 34 34 H 1.08002 * 126.05150 * 179.73872 * 18 17 16 35 35 H 1.09001 * 109.47014 * 317.99076 * 22 21 19 36 36 H 1.09006 * 109.46894 * 77.98867 * 22 21 19 37 37 H 1.08997 * 109.47218 * 197.98908 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5666 1.4437 -0.1008 5 7 4.0575 2.8236 -0.0625 6 6 4.4735 3.4342 -1.2148 7 1 3.7765 4.0159 -1.7997 8 6 5.7932 3.3055 -1.6321 9 7 6.0792 2.5869 -2.6943 10 14 7.1599 4.1542 -0.6828 11 1 7.7486 3.2031 0.2939 12 1 8.2117 4.6073 -1.6281 13 1 6.6059 5.3268 0.0405 14 6 4.0993 3.4918 1.1071 15 8 3.3572 4.4387 1.2942 16 6 5.0374 3.0788 2.1532 17 6 6.1476 3.7811 2.5774 18 6 6.7520 3.0252 3.5852 19 6 6.0183 1.8973 3.7571 20 35 6.3908 0.5215 5.0000 21 7 4.9733 1.9179 2.8929 22 6 3.9481 0.8792 2.7661 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.7364 1.9352 0.9238 29 1 1.6191 1.9767 -0.8519 30 1 3.8692 0.9763 -1.0378 31 1 3.9864 0.8855 0.7359 32 1 7.0046 2.4376 -2.9441 33 1 6.4853 4.7354 2.2012 34 1 7.6476 3.2896 4.1277 35 1 4.4182 -0.1031 2.8147 36 1 3.2283 0.9781 3.5787 37 1 3.4351 0.9897 1.8108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191610580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:13 Heat of formation + Delta-G solvation = 57.897012 kcal Electronic energy + Delta-G solvation = -21119.984116 eV Core-core repulsion = 17946.540796 eV Total energy + Delta-G solvation = -3173.443320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.02531 -38.33161 -35.89065 -33.95667 -32.85778 -32.22943 -31.51044 -28.75567 -28.02727 -26.31824 -24.82033 -23.21649 -21.45074 -20.74134 -20.16039 -18.59967 -17.67468 -16.54640 -15.87332 -15.21455 -14.91901 -14.71001 -14.35865 -13.99794 -13.71143 -13.25273 -13.12981 -12.71834 -12.63720 -12.46931 -12.26119 -12.11865 -11.72632 -11.56494 -11.43204 -10.93387 -10.82040 -10.70269 -10.58371 -10.47092 -10.42524 -10.15345 -9.86169 -9.32841 -8.51250 -8.40035 -7.75704 -7.26057 -6.44816 -4.05456 1.46283 2.08238 2.79758 3.11956 3.15352 3.34035 3.42479 3.49439 4.12443 4.33565 4.67374 4.91604 5.23384 5.24960 5.26063 5.42559 5.51414 5.58379 5.69573 5.77056 5.88088 6.03379 6.07792 6.12540 6.21477 6.34379 6.36978 6.41935 6.48324 6.83648 6.97525 7.02118 7.22557 7.24746 7.32754 8.47316 8.76088 8.92108 9.18488 9.88495 10.14297 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010924 B = 0.006456 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.565325 B = 4336.020703 C = 6004.370113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.140 4.140 4 C 0.104 3.896 5 N -0.527 5.527 6 C -0.443 4.443 7 H 0.073 0.927 8 C 0.175 3.825 9 N -0.734 5.734 10 Si 0.772 3.228 11 H -0.258 1.258 12 H -0.283 1.283 13 H -0.257 1.257 14 C 0.613 3.387 15 O -0.497 6.497 16 C 0.004 3.996 17 C -0.164 4.164 18 C -0.150 4.150 19 C -0.002 4.002 20 Br -0.014 7.014 21 N -0.406 5.406 22 C 0.019 3.981 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.277 0.723 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 -9.020 11.252 14.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.179 4.179 4 C -0.018 4.018 5 N -0.256 5.256 6 C -0.561 4.561 7 H 0.090 0.910 8 C -0.052 4.052 9 N -0.355 5.355 10 Si 0.591 3.409 11 H -0.183 1.183 12 H -0.209 1.209 13 H -0.181 1.181 14 C 0.402 3.598 15 O -0.368 6.368 16 C -0.115 4.115 17 C -0.189 4.189 18 C -0.177 4.177 19 C -0.193 4.193 20 Br 0.069 6.931 21 N -0.084 5.084 22 C -0.121 4.121 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.164 -9.352 11.527 14.889 hybrid contribution 1.162 0.738 0.273 1.403 sum -0.002 -8.614 11.800 14.610 Atomic orbital electron populations 1.21757 0.96274 1.00879 1.01801 1.21521 0.95561 0.97470 1.01619 1.22159 0.97989 0.95512 1.02241 1.22121 0.91643 0.86465 1.01532 1.41799 1.68856 1.11438 1.03496 1.17421 0.94229 1.43647 1.00813 0.90982 1.25788 0.98998 0.89271 0.91155 1.70690 1.21749 1.19213 1.23825 0.88508 0.83663 0.85054 0.83671 1.18254 1.20886 1.18079 1.18147 0.78234 0.82652 0.80736 1.90649 1.36135 1.30658 1.79392 1.22283 1.02297 0.87911 0.98977 1.21173 0.96453 1.01241 1.00050 1.20578 1.01497 0.93809 1.01860 1.21830 0.96974 0.99151 1.01359 1.96608 1.94189 1.47671 1.54593 1.43882 1.20337 1.16441 1.27701 1.23230 0.91398 0.90346 1.07167 0.93264 0.93086 0.92683 0.91690 0.92770 0.93174 0.90945 0.89895 0.93184 0.91156 0.83819 0.83721 0.89652 0.90579 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.39 16 2 C -0.12 -1.63 5.90 -26.73 -0.16 -1.78 16 3 C -0.14 -2.40 4.65 -26.73 -0.12 -2.52 16 4 C 0.10 2.08 5.01 -4.04 -0.02 2.06 16 5 N -0.53 -12.79 2.44 -116.38 -0.28 -13.07 16 6 C -0.44 -12.03 8.79 -15.01 -0.13 -12.16 16 7 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 8 C 0.18 4.59 5.39 -17.45 -0.09 4.50 16 9 N -0.73 -18.83 13.95 55.50 0.77 -18.06 16 10 Si 0.77 18.81 26.14 -169.99 -4.44 14.36 16 11 H -0.26 -6.28 7.02 56.52 0.40 -5.89 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.26 -6.48 6.75 56.52 0.38 -6.10 16 14 C 0.61 14.93 4.81 -12.95 -0.06 14.87 16 15 O -0.50 -13.33 17.95 5.14 0.09 -13.24 16 16 C 0.00 0.09 6.27 -81.95 -0.51 -0.42 16 17 C -0.16 -3.44 9.06 -39.09 -0.35 -3.79 16 18 C -0.15 -2.68 10.76 -39.95 -0.43 -3.11 16 19 C 0.00 -0.04 7.28 -16.80 -0.12 -0.16 16 20 Br -0.01 -0.18 33.57 -68.01 -2.28 -2.47 16 21 N -0.41 -7.49 3.17 -118.23 -0.37 -7.86 16 22 C 0.02 0.27 9.61 59.85 0.57 0.85 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.63 7.95 -51.93 -0.41 0.21 16 28 H 0.05 0.88 7.75 -51.93 -0.40 0.48 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.08 1.76 7.94 -51.93 -0.41 1.34 16 31 H 0.05 0.91 3.99 -51.93 -0.21 0.70 16 32 H 0.28 6.50 8.32 -40.82 -0.34 6.16 16 33 H 0.14 3.03 6.92 -52.49 -0.36 2.66 16 34 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.08 1.07 8.03 -51.93 -0.42 0.65 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.14 2.09 2.14 -51.93 -0.11 1.98 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -29.24 323.52 -7.58 -36.82 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.87 Total: 1.72 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -1.07 Total: -3.08 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.12 Total: -38.99 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.24 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.44 Total: 14.36 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -2.28 Total: -2.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.24 -7.58 -36.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191610580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.713 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds