Wall clock time and date at job start Tue Mar 31 2020 14:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47017 * 2 1 4 4 O 1.42904 * 109.47218 * 239.99957 * 2 1 3 5 5 C 1.35913 * 117.00230 * 205.01370 * 4 2 1 6 6 C 1.38721 * 120.05915 * 354.51309 * 5 4 2 7 7 C 1.38145 * 119.95286 * 179.74582 * 6 5 4 8 8 C 1.38281 * 120.07462 * 0.50158 * 7 6 5 9 9 C 1.50694 * 119.94088 * 179.74722 * 8 7 6 10 10 O 1.42898 * 109.47356 * 270.01927 * 9 8 7 11 11 C 1.42892 * 114.00022 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.47261 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99353 * 0.02562 * 12 11 10 14 14 C 1.37867 * 120.00313 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00142 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00122 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46862 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47083 * 120.00065 * 16 14 12 19 19 H 1.48499 * 109.47317 * 240.00118 * 16 14 12 20 20 C 1.38246 * 120.11195 * 359.77212 * 8 7 6 21 21 C 1.38239 * 120.04880 * 359.97198 * 20 8 7 22 22 Br 1.89096 * 120.03526 * 179.97438 * 21 20 8 23 23 H 1.08997 * 109.47215 * 60.00101 * 1 2 3 24 24 H 1.09002 * 109.47059 * 299.99687 * 1 2 3 25 25 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47243 * 119.99818 * 2 1 3 27 27 H 1.09008 * 109.46813 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47467 * 299.99674 * 3 2 1 29 29 H 1.09000 * 109.47417 * 60.00490 * 3 2 1 30 30 H 1.08006 * 120.02216 * 359.97438 * 6 5 4 31 31 H 1.08005 * 119.96151 * 180.25550 * 7 6 5 32 32 H 1.09000 * 109.47277 * 30.02655 * 9 8 7 33 33 H 1.09004 * 109.46732 * 150.02507 * 9 8 7 34 34 H 1.08992 * 109.47836 * 300.00209 * 11 10 9 35 35 H 1.09006 * 109.47146 * 60.00598 * 11 10 9 36 36 H 0.97004 * 119.99911 * 179.97438 * 15 14 12 37 37 H 1.08000 * 119.97249 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 3.2467 -1.2251 -1.0978 6 6 4.0352 -1.0236 0.0256 7 6 5.2935 -1.5894 0.0956 8 6 5.7718 -2.3478 -0.9571 9 6 7.1471 -2.9589 -0.8799 10 8 8.1057 -2.0442 -1.4152 11 6 9.4494 -2.5293 -1.3896 12 6 10.3703 -1.4892 -1.9738 13 1 9.9693 -0.5513 -2.3288 14 6 11.7245 -1.7350 -2.0553 15 7 12.2128 -2.8769 -1.6226 16 14 12.8660 -0.4454 -2.7789 17 1 12.0743 0.7422 -3.1888 18 1 13.8691 -0.0447 -1.7600 19 1 13.5617 -1.0089 -3.9636 20 6 4.9907 -2.5458 -2.0805 21 6 3.7288 -1.9862 -2.1535 22 35 2.6610 -2.2567 -3.6905 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.6641 -0.4277 0.8465 31 1 5.9059 -1.4360 0.9719 32 1 7.3914 -3.1738 0.1604 33 1 7.1665 -3.8839 -1.4563 34 1 9.7418 -2.7356 -0.3600 35 1 9.5163 -3.4453 -1.9768 36 1 13.1655 -3.0499 -1.6802 37 1 5.3664 -3.1388 -2.9012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205620354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:24 Heat of formation + Delta-G solvation = -67.923820 kcal Electronic energy + Delta-G solvation = -19333.435101 eV Core-core repulsion = 16122.243029 eV Total energy + Delta-G solvation = -3211.192072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.47908 -38.24072 -36.41470 -33.64706 -32.74749 -32.14267 -30.86244 -29.16215 -27.65463 -27.28752 -25.18580 -23.39975 -22.31651 -21.54970 -20.70059 -18.45460 -16.57757 -16.37315 -15.72358 -15.49408 -15.35450 -14.83469 -14.58143 -14.25681 -14.07309 -13.64656 -13.43163 -13.09792 -12.76959 -12.60510 -12.53370 -12.13049 -11.79470 -11.58564 -11.33542 -11.09893 -10.94009 -10.87157 -10.76406 -10.73249 -10.58251 -10.16496 -10.02841 -9.14847 -8.89037 -8.82173 -8.22280 -8.13294 -6.13096 -4.14850 1.12572 1.29315 1.71570 2.93338 3.28410 3.34985 3.41502 3.55500 4.35522 4.44313 4.57187 4.65371 4.76000 4.82639 4.92565 5.21363 5.23599 5.28144 5.30055 5.41282 5.44178 5.45535 5.54564 5.65488 5.76582 5.87506 5.94815 5.99379 6.05680 6.21891 6.61953 6.67748 7.04840 7.20054 7.38478 7.77614 8.11628 8.52044 8.98508 9.50215 10.98381 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.003002 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.605230 B = 9324.471665 C =10109.311274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 C -0.182 4.182 4 O -0.299 6.299 5 C 0.155 3.845 6 C -0.209 4.209 7 C -0.044 4.044 8 C -0.104 4.104 9 C 0.103 3.897 10 O -0.389 6.389 11 C 0.194 3.806 12 C -0.514 4.514 13 H 0.067 0.933 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.907 3.093 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.033 4.033 21 C -0.128 4.128 22 Br -0.046 7.046 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.264 0.736 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.879 2.585 3.334 25.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.019 3.981 3 C -0.239 4.239 4 O -0.212 6.212 5 C 0.107 3.893 6 C -0.228 4.228 7 C -0.063 4.063 8 C -0.105 4.105 9 C 0.026 3.974 10 O -0.310 6.310 11 C 0.120 3.880 12 C -0.553 4.553 13 H 0.085 0.915 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.735 3.265 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.053 4.053 21 C -0.208 4.208 22 Br 0.039 6.961 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.073 0.927 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -25.306 2.581 2.543 25.564 hybrid contribution 1.180 0.448 0.320 1.302 sum -24.126 3.029 2.864 24.484 Atomic orbital electron populations 1.21841 0.92353 1.03201 1.03040 1.22482 0.95481 0.92766 0.87373 1.22402 1.02540 0.95813 1.03178 1.86215 1.28662 1.67729 1.38617 1.18524 0.85143 0.92365 0.93271 1.21207 0.96329 1.06704 0.98609 1.21044 0.94018 0.92828 0.98394 1.19763 0.96097 1.00545 0.94106 1.21052 0.85762 0.92402 0.98186 1.87943 1.18242 1.41885 1.82888 1.20252 0.76321 0.95472 0.95999 1.21090 0.91108 1.02546 1.40517 0.91460 1.24946 0.97927 0.96026 0.95586 1.69970 1.13588 1.23269 1.46940 0.86285 0.80254 0.81305 0.78697 1.19440 1.20823 1.20796 1.20928 0.90411 0.96420 0.97555 1.20940 0.97353 1.08079 0.94397 1.96638 1.68676 1.96190 1.34566 0.91371 0.90555 0.91617 0.90748 0.91520 0.91298 0.90993 0.84610 0.84897 0.93301 0.93335 0.97561 0.97514 0.92672 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.56 37.16 0.36 -0.63 16 2 C 0.08 0.65 2.84 -26.73 -0.08 0.57 16 3 C -0.18 -1.44 9.17 37.16 0.34 -1.10 16 4 O -0.30 -3.61 9.14 -19.47 -0.18 -3.79 16 5 C 0.15 2.08 6.59 -39.20 -0.26 1.82 16 6 C -0.21 -2.58 8.25 -39.44 -0.33 -2.91 16 7 C -0.04 -0.62 9.69 -39.60 -0.38 -1.00 16 8 C -0.10 -1.66 5.51 -104.61 -0.58 -2.24 16 9 C 0.10 1.90 6.06 36.00 0.22 2.12 16 10 O -0.39 -9.37 10.31 -35.23 -0.36 -9.74 16 11 C 0.19 5.27 5.69 36.01 0.20 5.47 16 12 C -0.51 -15.14 9.43 -34.44 -0.32 -15.46 16 13 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 16 Si 0.91 21.83 29.54 -169.99 -5.02 16.81 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 C -0.03 -0.51 9.44 -39.58 -0.37 -0.88 16 21 C -0.13 -1.86 6.24 -39.38 -0.25 -2.10 16 22 Br -0.05 -0.61 33.16 -68.01 -2.26 -2.86 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.58 6.31 -51.92 -0.33 0.25 16 27 H 0.07 0.61 6.92 -51.92 -0.36 0.25 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.14 1.31 5.43 -52.48 -0.28 1.02 16 31 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 32 H 0.05 0.83 8.08 -51.93 -0.42 0.41 16 33 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 334.74 15.07 5.04 5.04 Total: -1.00 -31.68 334.74 -8.74 -40.42 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -5.16 Total: -5.05 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -1.54 Total: -14.83 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.74 Total: -26.01 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.54 Total: -13.52 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -2.26 Total: -2.86 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.68 -8.74 -40.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205620354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.505 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds