Wall clock time and date at job start Tue Mar 31 2020 14:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47017 * 2 1 4 4 O 1.42904 * 109.47218 * 239.99957 * 2 1 3 5 5 C 1.35913 * 117.00230 * 205.01370 * 4 2 1 6 6 C 1.38721 * 120.05915 * 354.51309 * 5 4 2 7 7 C 1.38145 * 119.95286 * 179.74582 * 6 5 4 8 8 C 1.38281 * 120.07462 * 0.50158 * 7 6 5 9 9 C 1.50694 * 119.94088 * 179.74722 * 8 7 6 10 10 O 1.42898 * 109.47356 * 270.01927 * 9 8 7 11 11 C 1.42892 * 114.00022 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.47261 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99353 * 0.02562 * 12 11 10 14 14 C 1.37867 * 120.00313 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00142 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00122 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46862 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47083 * 120.00065 * 16 14 12 19 19 H 1.48499 * 109.47317 * 240.00118 * 16 14 12 20 20 C 1.38246 * 120.11195 * 359.77212 * 8 7 6 21 21 C 1.38239 * 120.04880 * 359.97198 * 20 8 7 22 22 Br 1.89096 * 120.03526 * 179.97438 * 21 20 8 23 23 H 1.08997 * 109.47215 * 60.00101 * 1 2 3 24 24 H 1.09002 * 109.47059 * 299.99687 * 1 2 3 25 25 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47243 * 119.99818 * 2 1 3 27 27 H 1.09008 * 109.46813 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47467 * 299.99674 * 3 2 1 29 29 H 1.09000 * 109.47417 * 60.00490 * 3 2 1 30 30 H 1.08006 * 120.02216 * 359.97438 * 6 5 4 31 31 H 1.08005 * 119.96151 * 180.25550 * 7 6 5 32 32 H 1.09000 * 109.47277 * 30.02655 * 9 8 7 33 33 H 1.09004 * 109.46732 * 150.02507 * 9 8 7 34 34 H 1.08992 * 109.47836 * 300.00209 * 11 10 9 35 35 H 1.09006 * 109.47146 * 60.00598 * 11 10 9 36 36 H 0.97004 * 119.99911 * 179.97438 * 15 14 12 37 37 H 1.08000 * 119.97249 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 3.2467 -1.2251 -1.0978 6 6 4.0352 -1.0236 0.0256 7 6 5.2935 -1.5894 0.0956 8 6 5.7718 -2.3478 -0.9571 9 6 7.1471 -2.9589 -0.8799 10 8 8.1057 -2.0442 -1.4152 11 6 9.4494 -2.5293 -1.3896 12 6 10.3703 -1.4892 -1.9738 13 1 9.9693 -0.5513 -2.3288 14 6 11.7245 -1.7350 -2.0553 15 7 12.2128 -2.8769 -1.6226 16 14 12.8660 -0.4454 -2.7789 17 1 12.0743 0.7422 -3.1888 18 1 13.8691 -0.0447 -1.7600 19 1 13.5617 -1.0089 -3.9636 20 6 4.9907 -2.5458 -2.0805 21 6 3.7288 -1.9862 -2.1535 22 35 2.6610 -2.2567 -3.6905 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.6641 -0.4277 0.8465 31 1 5.9059 -1.4360 0.9719 32 1 7.3914 -3.1738 0.1604 33 1 7.1665 -3.8839 -1.4563 34 1 9.7418 -2.7356 -0.3600 35 1 9.5163 -3.4453 -1.9768 36 1 13.1655 -3.0499 -1.6802 37 1 5.3664 -3.1388 -2.9012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205620354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:23 Heat of formation + Delta-G solvation = -85.785994 kcal Electronic energy + Delta-G solvation = -19334.209663 eV Core-core repulsion = 16122.243029 eV Total energy + Delta-G solvation = -3211.966634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.46216 -39.41568 -38.06341 -34.99407 -34.37184 -33.16305 -32.10143 -30.31971 -29.33654 -28.17456 -26.58827 -24.50028 -24.32798 -22.61520 -21.64313 -19.36621 -18.69944 -17.46605 -17.39144 -16.71162 -16.53822 -16.21778 -16.15803 -15.69605 -15.16673 -14.78036 -14.45200 -14.43257 -13.84772 -13.57688 -13.38257 -13.20672 -13.12859 -12.98222 -12.79228 -12.68571 -12.42727 -12.21972 -11.99413 -11.87815 -11.71851 -11.58046 -11.27739 -11.19325 -10.90158 -10.26859 -9.91394 -9.22706 -8.32734 -6.45020 0.02833 0.16917 0.62911 1.40204 1.41289 1.56098 2.08123 2.31483 2.44219 3.01066 3.33860 3.66352 3.76479 3.89055 3.99787 4.05241 4.13668 4.15970 4.20872 4.44822 4.55123 4.70923 4.74469 4.80757 4.83420 4.86309 4.88994 4.94584 5.10579 5.16974 5.25250 5.30260 5.47537 5.54166 5.56499 5.94981 6.29121 6.50565 6.80123 7.26854 8.79479 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.003002 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.605230 B = 9324.471665 C =10109.311274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.064 3.936 3 C -0.180 4.180 4 O -0.309 6.309 5 C 0.159 3.841 6 C -0.200 4.200 7 C -0.045 4.045 8 C -0.127 4.127 9 C 0.099 3.901 10 O -0.406 6.406 11 C 0.208 3.792 12 C -0.549 4.549 13 H 0.059 0.941 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.982 3.018 17 H -0.266 1.266 18 H -0.270 1.270 19 H -0.271 1.271 20 C -0.041 4.041 21 C -0.145 4.145 22 Br -0.039 7.039 23 H 0.063 0.937 24 H 0.101 0.899 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.167 0.833 31 H 0.148 0.852 32 H 0.061 0.939 33 H 0.052 0.948 34 H -0.008 1.008 35 H -0.011 1.011 36 H 0.271 0.729 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.787 4.080 4.082 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.009 3.991 3 C -0.237 4.237 4 O -0.222 6.222 5 C 0.111 3.889 6 C -0.219 4.219 7 C -0.063 4.063 8 C -0.128 4.128 9 C 0.022 3.978 10 O -0.326 6.326 11 C 0.133 3.867 12 C -0.586 4.586 13 H 0.078 0.922 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.804 3.196 17 H -0.190 1.190 18 H -0.195 1.195 19 H -0.197 1.197 20 C -0.061 4.061 21 C -0.224 4.224 22 Br 0.046 6.954 23 H 0.082 0.918 24 H 0.120 0.880 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.185 0.815 31 H 0.165 0.835 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.010 0.990 35 H 0.007 0.993 36 H 0.080 0.920 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -26.245 4.068 3.301 26.763 hybrid contribution 1.293 -0.024 0.131 1.300 sum -24.953 4.043 3.431 25.510 Atomic orbital electron populations 1.21869 0.90819 1.03356 1.04063 1.22859 0.96696 0.92937 0.86623 1.22401 1.01697 0.95481 1.04130 1.86230 1.27793 1.67619 1.40601 1.18663 0.85776 0.91497 0.92994 1.21473 0.95365 1.06039 0.99030 1.21246 0.94823 0.92079 0.98184 1.19614 0.94968 1.02617 0.95622 1.21269 0.85874 0.92006 0.98603 1.87888 1.17570 1.43588 1.83596 1.19873 0.78013 0.94330 0.94493 1.21407 0.92427 1.02910 1.41883 0.92236 1.25927 0.99372 0.98345 0.95426 1.70065 1.14466 1.25025 1.47267 0.85159 0.77847 0.78300 0.78252 1.18994 1.19477 1.19667 1.20929 0.90977 0.96800 0.97406 1.21061 0.97355 1.08711 0.95319 1.96623 1.68268 1.96214 1.34257 0.91838 0.88044 0.91908 0.89460 0.92743 0.91981 0.88485 0.81549 0.83473 0.92065 0.92944 0.99004 0.99344 0.91982 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.56 71.98 0.69 -0.87 16 2 C 0.06 0.94 2.84 30.59 0.09 1.03 16 3 C -0.18 -2.40 9.17 71.98 0.66 -1.74 16 4 O -0.31 -6.94 9.14 -92.57 -0.85 -7.79 16 5 C 0.16 4.06 6.59 22.52 0.15 4.21 16 6 C -0.20 -4.55 8.25 22.36 0.18 -4.37 16 7 C -0.04 -1.20 9.69 22.26 0.22 -0.99 16 8 C -0.13 -4.08 5.51 -19.85 -0.11 -4.19 16 9 C 0.10 3.72 6.06 71.23 0.43 4.15 16 10 O -0.41 -20.09 10.31 -148.98 -1.54 -21.63 16 11 C 0.21 11.68 5.69 71.24 0.41 12.08 16 12 C -0.55 -32.91 9.43 25.60 0.24 -32.67 16 13 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 14 C 0.01 0.46 5.46 84.65 0.46 0.92 16 15 N -0.93 -55.65 13.29 21.44 0.28 -55.37 16 16 Si 0.98 44.51 29.54 68.60 2.03 46.53 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 C -0.04 -1.28 9.44 22.27 0.21 -1.07 16 21 C -0.14 -4.14 6.24 22.40 0.14 -4.00 16 22 Br -0.04 -1.01 33.16 -20.37 -0.68 -1.68 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.09 1.07 6.31 -2.38 -0.02 1.05 16 27 H 0.05 0.87 6.92 -2.38 -0.02 0.85 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.17 2.67 5.43 -2.91 -0.02 2.66 16 31 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 32 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 33 H 0.05 1.89 8.08 -2.38 -0.02 1.87 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 36 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -68.21 334.74 4.08 -64.14 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: 1.06 Total: 3.30 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 3.77 Total: -27.50 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.28 Total: -55.37 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -2.38 Total: -29.42 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 35 Polarization: -1.01 SS G_CDS: -0.68 Total: -1.68 kcal Total: -68.21 4.08 -64.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205620354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.650 kcal (2) G-P(sol) polarization free energy of solvation -68.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds