Wall clock time and date at job start Tue Mar 31 2020 14:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00255 * 2 1 4 4 H 1.48510 * 109.46958 * 269.99334 * 3 2 1 5 5 H 1.48494 * 109.47304 * 29.99249 * 3 2 1 6 6 H 1.48500 * 109.47424 * 149.99810 * 3 2 1 7 7 C 1.37883 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99740 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00206 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47419 * 180.02562 * 9 7 2 11 11 C 1.42900 * 114.00386 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47058 * 29.99605 * 11 10 9 13 13 C 1.52998 * 109.47036 * 270.00139 * 11 10 9 14 14 Br 1.96599 * 109.47572 * 64.99619 * 13 11 10 15 15 C 1.52991 * 109.47437 * 149.99475 * 11 10 9 16 16 O 1.42903 * 109.47131 * 65.00117 * 15 11 10 17 17 C 1.42899 * 114.00342 * 180.02562 * 16 15 11 18 18 C 1.50701 * 109.47103 * 180.02562 * 17 16 15 19 19 C 1.38235 * 119.99808 * 89.99842 * 18 17 16 20 20 C 1.38243 * 119.99602 * 179.97438 * 19 18 17 21 21 C 1.38231 * 120.00070 * 0.07188 * 20 19 18 22 22 C 1.38234 * 119.99892 * 359.90902 * 21 20 19 23 23 C 1.38230 * 119.99865 * 269.97588 * 18 17 16 24 24 H 0.97003 * 120.00078 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47107 * 59.99202 * 9 7 2 26 26 H 1.09009 * 109.46933 * 300.00336 * 9 7 2 27 27 H 1.09001 * 109.47412 * 184.99705 * 13 11 10 28 28 H 1.09001 * 109.46738 * 304.99698 * 13 11 10 29 29 H 1.08999 * 109.47303 * 305.00324 * 15 11 10 30 30 H 1.08994 * 109.47466 * 184.99780 * 15 11 10 31 31 H 1.08993 * 109.47528 * 59.99500 * 17 16 15 32 32 H 1.09001 * 109.46686 * 299.99411 * 17 16 15 33 33 H 1.08000 * 120.00616 * 359.70324 * 19 18 17 34 34 H 1.08001 * 119.99556 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.99633 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.99751 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.00371 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1794 -3.5854 0.0017 11 6 1.5648 -4.8755 0.0013 12 1 0.6056 -4.8208 -0.5136 13 6 1.3439 -5.3356 1.4436 14 35 0.0501 -4.1435 2.3210 15 6 2.4740 -5.8732 -0.7189 16 8 3.6865 -6.0324 0.0204 17 6 4.6111 -6.9483 -0.5697 18 6 5.8462 -7.0385 0.2891 19 6 5.9174 -7.9778 1.3009 20 6 7.0506 -8.0609 2.0883 21 6 8.1118 -7.2037 1.8649 22 6 8.0407 -6.2647 0.8529 23 6 6.9079 -6.1823 0.0649 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5570 -0.8896 26 1 0.6238 -2.5567 0.8903 27 1 0.9575 -6.3549 1.4447 28 1 2.2902 -5.3052 1.9836 29 1 2.7034 -5.5008 -1.7172 30 1 1.9675 -6.8352 -0.7975 31 1 4.8848 -6.5979 -1.5647 32 1 4.1491 -7.9327 -0.6454 33 1 5.0861 -8.6439 1.4790 34 1 7.1061 -8.7945 2.8790 35 1 8.9969 -7.2684 2.4804 36 1 8.8700 -5.5953 0.6782 37 1 6.8523 -5.4485 -0.7256 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622098.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:44 Heat of formation + Delta-G solvation = -67.493615 kcal Electronic energy + Delta-G solvation = -19570.649058 eV Core-core repulsion = 16359.475641 eV Total energy + Delta-G solvation = -3211.173417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.43861 -38.13436 -36.54866 -32.95479 -32.15831 -31.39262 -30.97568 -29.41592 -26.84104 -26.13061 -25.08629 -22.65993 -22.33047 -21.38281 -20.72158 -17.09420 -16.73848 -16.35769 -16.05930 -15.51233 -15.33901 -14.73249 -14.64800 -14.23376 -13.99829 -13.47834 -13.29879 -12.82667 -12.76056 -12.31281 -12.21507 -11.93616 -11.53216 -11.21336 -11.10489 -10.96498 -10.76130 -10.74659 -10.45826 -10.01883 -9.77401 -9.54780 -9.26181 -8.98918 -8.94798 -8.89938 -8.57536 -7.68122 -5.99480 -3.98718 1.19250 1.33334 2.22751 3.35661 3.40770 3.46509 3.50798 4.09579 4.39029 4.72480 4.74184 4.77927 4.92149 4.99817 5.03103 5.17281 5.26841 5.32571 5.36877 5.37309 5.48322 5.57025 5.60096 5.82627 5.88478 5.95966 5.98125 6.18838 6.35589 6.41848 6.53536 6.90251 7.23923 7.30198 7.67375 7.88587 8.27560 8.64203 9.11561 9.63145 11.11619 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011394 B = 0.004008 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.765135 B = 6985.180189 C = 8504.635930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.165 3.835 10 O -0.372 6.372 11 C 0.092 3.908 12 H 0.076 0.924 13 C -0.094 4.094 14 Br -0.149 7.149 15 C 0.069 3.931 16 O -0.365 6.365 17 C 0.100 3.900 18 C -0.085 4.085 19 C -0.101 4.101 20 C -0.127 4.127 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.095 4.095 24 H 0.261 0.739 25 H -0.002 1.002 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.805 -18.363 1.773 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.091 3.909 10 O -0.292 6.292 11 C 0.032 3.968 12 H 0.093 0.907 13 C -0.210 4.210 14 Br -0.067 7.067 15 C -0.008 4.008 16 O -0.284 6.284 17 C 0.023 3.977 18 C -0.086 4.086 19 C -0.119 4.119 20 C -0.145 4.145 21 C -0.136 4.136 22 C -0.141 4.141 23 C -0.113 4.113 24 H 0.071 0.929 25 H 0.016 0.984 26 H 0.067 0.933 27 H 0.110 0.890 28 H 0.127 0.873 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.437 -17.700 2.263 19.332 hybrid contribution 0.299 0.526 -0.408 0.730 sum 7.736 -17.174 1.855 18.927 Atomic orbital electron populations 1.69969 1.05935 1.26775 1.50923 1.24873 0.94903 0.99059 0.95498 0.86436 0.79796 0.82772 0.78079 1.20646 1.21171 1.19708 1.21019 0.93847 0.89472 1.50291 0.91919 1.20968 0.89380 0.83091 0.97490 1.88022 1.34993 1.11777 1.94369 1.21988 0.95500 0.87332 0.92001 0.90670 1.25343 0.98906 0.97456 0.99344 1.97349 1.60198 1.67797 1.81397 1.22690 0.85337 0.97104 0.95690 1.88088 1.27648 1.63615 1.49075 1.21289 0.88082 0.93156 0.95127 1.19628 0.94764 0.96677 0.97485 1.21049 0.97796 0.98412 0.94627 1.21117 0.93899 0.99738 0.99709 1.21174 0.98716 0.95847 0.97849 1.21165 0.98239 0.98751 0.95994 1.21142 0.93006 0.97528 0.99583 0.92903 0.98428 0.93307 0.88974 0.87273 0.91943 0.92634 0.92453 0.92838 0.86074 0.86100 0.86186 0.85939 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -15.18 9.43 -34.44 -0.32 -15.50 16 8 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.16 4.49 5.26 36.00 0.19 4.68 16 10 O -0.37 -8.92 9.91 -40.08 -0.40 -9.32 16 11 C 0.09 1.65 2.76 -26.74 -0.07 1.58 16 12 H 0.08 1.32 7.79 -51.93 -0.40 0.91 16 13 C -0.09 -1.53 6.00 37.16 0.22 -1.31 16 14 Br -0.15 -2.83 30.47 -68.01 -2.07 -4.90 16 15 C 0.07 0.99 5.81 37.15 0.22 1.21 16 16 O -0.37 -5.63 9.51 -40.08 -0.38 -6.01 16 17 C 0.10 1.19 6.06 36.01 0.22 1.41 16 18 C -0.09 -1.05 5.51 -104.63 -0.58 -1.63 16 19 C -0.10 -1.11 9.70 -39.58 -0.38 -1.49 16 20 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 21 C -0.12 -1.18 10.05 -39.59 -0.40 -1.57 16 22 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 23 C -0.09 -1.15 9.70 -39.59 -0.38 -1.53 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.00 -0.06 8.08 -51.93 -0.42 -0.48 16 26 H 0.05 1.33 4.52 -51.92 -0.23 1.10 16 27 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.11 1.88 7.73 -51.93 -0.40 1.48 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 32 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -33.27 335.02 -9.50 -42.77 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.23 Total: -2.55 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -2.19 Total: -15.97 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.74 Total: -26.40 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.78 Total: -15.33 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 35 Polarization: -2.83 SS G_CDS: -2.07 Total: -4.90 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.27 -9.50 -42.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622098.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.721 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds