Wall clock time and date at job start Tue Mar 31 2020 14:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00255 * 2 1 4 4 H 1.48510 * 109.46958 * 269.99334 * 3 2 1 5 5 H 1.48494 * 109.47304 * 29.99249 * 3 2 1 6 6 H 1.48500 * 109.47424 * 149.99810 * 3 2 1 7 7 C 1.37883 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99740 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00206 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47419 * 180.02562 * 9 7 2 11 11 C 1.42900 * 114.00386 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47058 * 29.99605 * 11 10 9 13 13 C 1.52998 * 109.47036 * 270.00139 * 11 10 9 14 14 Br 1.96599 * 109.47572 * 64.99619 * 13 11 10 15 15 C 1.52991 * 109.47437 * 149.99475 * 11 10 9 16 16 O 1.42903 * 109.47131 * 65.00117 * 15 11 10 17 17 C 1.42899 * 114.00342 * 180.02562 * 16 15 11 18 18 C 1.50701 * 109.47103 * 180.02562 * 17 16 15 19 19 C 1.38235 * 119.99808 * 89.99842 * 18 17 16 20 20 C 1.38243 * 119.99602 * 179.97438 * 19 18 17 21 21 C 1.38231 * 120.00070 * 0.07188 * 20 19 18 22 22 C 1.38234 * 119.99892 * 359.90902 * 21 20 19 23 23 C 1.38230 * 119.99865 * 269.97588 * 18 17 16 24 24 H 0.97003 * 120.00078 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47107 * 59.99202 * 9 7 2 26 26 H 1.09009 * 109.46933 * 300.00336 * 9 7 2 27 27 H 1.09001 * 109.47412 * 184.99705 * 13 11 10 28 28 H 1.09001 * 109.46738 * 304.99698 * 13 11 10 29 29 H 1.08999 * 109.47303 * 305.00324 * 15 11 10 30 30 H 1.08994 * 109.47466 * 184.99780 * 15 11 10 31 31 H 1.08993 * 109.47528 * 59.99500 * 17 16 15 32 32 H 1.09001 * 109.46686 * 299.99411 * 17 16 15 33 33 H 1.08000 * 120.00616 * 359.70324 * 19 18 17 34 34 H 1.08001 * 119.99556 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.99633 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.99751 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.00371 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1794 -3.5854 0.0017 11 6 1.5648 -4.8755 0.0013 12 1 0.6056 -4.8208 -0.5136 13 6 1.3439 -5.3356 1.4436 14 35 0.0501 -4.1435 2.3210 15 6 2.4740 -5.8732 -0.7189 16 8 3.6865 -6.0324 0.0204 17 6 4.6111 -6.9483 -0.5697 18 6 5.8462 -7.0385 0.2891 19 6 5.9174 -7.9778 1.3009 20 6 7.0506 -8.0609 2.0883 21 6 8.1118 -7.2037 1.8649 22 6 8.0407 -6.2647 0.8529 23 6 6.9079 -6.1823 0.0649 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5570 -0.8896 26 1 0.6238 -2.5567 0.8903 27 1 0.9575 -6.3549 1.4447 28 1 2.2902 -5.3052 1.9836 29 1 2.7034 -5.5008 -1.7172 30 1 1.9675 -6.8352 -0.7975 31 1 4.8848 -6.5979 -1.5647 32 1 4.1491 -7.9327 -0.6454 33 1 5.0861 -8.6439 1.4790 34 1 7.1061 -8.7945 2.8790 35 1 8.9969 -7.2684 2.4804 36 1 8.8700 -5.5953 0.6782 37 1 6.8523 -5.4485 -0.7256 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622098.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:44 Heat of formation + Delta-G solvation = -87.093527 kcal Electronic energy + Delta-G solvation = -19571.498974 eV Core-core repulsion = 16359.475641 eV Total energy + Delta-G solvation = -3212.023333 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.30880 -39.44863 -37.96908 -34.97879 -33.53989 -32.58074 -31.77066 -30.83770 -28.91225 -27.15948 -26.21696 -24.47547 -23.46155 -22.23731 -22.10165 -18.58277 -18.17826 -17.75322 -17.18306 -16.81068 -16.54937 -16.21190 -16.08946 -15.61327 -15.27615 -14.69644 -14.26274 -14.13352 -14.04480 -13.69918 -13.46224 -13.18968 -13.01639 -12.83504 -12.68830 -12.52501 -12.22929 -11.89257 -11.86036 -11.73080 -11.57397 -11.01543 -10.73873 -10.68262 -10.52861 -9.80380 -9.73906 -9.50480 -8.23326 -6.31707 0.36365 0.51757 0.87780 1.38979 1.41328 1.52988 2.37273 2.59945 3.09751 3.13198 3.17393 3.66560 3.86261 3.94481 4.10713 4.15857 4.17876 4.28942 4.35358 4.38041 4.48479 4.59781 4.64125 4.68133 4.79462 4.82452 5.09824 5.10233 5.17285 5.52274 5.56395 5.60955 5.62197 5.69905 6.09275 6.11743 6.25493 6.63436 6.92101 7.36432 8.87760 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011394 B = 0.004008 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.765135 B = 6985.180189 C = 8504.635930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.542 4.542 8 H 0.050 0.950 9 C 0.178 3.822 10 O -0.394 6.394 11 C 0.078 3.922 12 H 0.078 0.922 13 C -0.080 4.080 14 Br -0.179 7.179 15 C 0.075 3.925 16 O -0.393 6.393 17 C 0.098 3.902 18 C -0.106 4.106 19 C -0.110 4.110 20 C -0.131 4.131 21 C -0.122 4.122 22 C -0.135 4.135 23 C -0.120 4.120 24 H 0.267 0.733 25 H -0.028 1.028 26 H 0.050 0.950 27 H 0.136 0.864 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.680 -19.574 2.195 21.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.580 4.580 8 H 0.069 0.931 9 C 0.103 3.897 10 O -0.314 6.314 11 C 0.019 3.981 12 H 0.095 0.905 13 C -0.195 4.195 14 Br -0.099 7.099 15 C -0.002 4.002 16 O -0.313 6.313 17 C 0.023 3.977 18 C -0.106 4.106 19 C -0.128 4.128 20 C -0.149 4.149 21 C -0.140 4.140 22 C -0.153 4.153 23 C -0.138 4.138 24 H 0.076 0.924 25 H -0.010 1.010 26 H 0.068 0.932 27 H 0.155 0.845 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.156 0.844 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.154 0.846 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.318 -18.940 2.676 20.859 hybrid contribution 0.082 0.772 -0.544 0.948 sum 8.401 -18.169 2.132 20.130 Atomic orbital electron populations 1.70068 1.07371 1.28073 1.50947 1.25764 0.95853 1.02671 0.94486 0.85378 0.78476 0.78063 0.78693 1.19395 1.20009 1.19357 1.21362 0.93581 0.91468 1.51542 0.93120 1.20641 0.89206 0.83731 0.96137 1.87957 1.35247 1.13522 1.94667 1.22407 0.96567 0.85468 0.93683 0.90456 1.25379 0.97912 0.98723 0.97534 1.97343 1.61310 1.69278 1.81928 1.22666 0.85129 0.97943 0.94458 1.88037 1.28393 1.64992 1.49887 1.21450 0.87612 0.93747 0.94930 1.19822 0.94925 0.97435 0.98452 1.21329 0.98789 0.98355 0.94285 1.21497 0.93431 0.99990 0.99936 1.21538 0.99688 0.95204 0.97586 1.21434 0.98306 0.99410 0.96138 1.21305 0.94079 0.98097 1.00297 0.92411 1.01012 0.93235 0.84546 0.88084 0.92373 0.88009 0.92312 0.90053 0.84391 0.83574 0.83743 0.84554 0.86361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.48 13.29 21.45 0.28 -56.20 16 2 C 0.01 0.63 5.46 84.66 0.46 1.09 16 3 Si 0.97 45.90 29.54 68.60 2.03 47.93 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -33.09 9.43 25.60 0.24 -32.85 16 8 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 9 C 0.18 9.96 5.26 71.23 0.37 10.34 16 10 O -0.39 -19.24 9.91 -144.34 -1.43 -20.67 16 11 C 0.08 2.74 2.76 30.59 0.08 2.83 16 12 H 0.08 2.68 7.79 -2.39 -0.02 2.66 16 13 C -0.08 -2.49 6.00 71.98 0.43 -2.06 16 14 Br -0.18 -6.81 30.47 -20.37 -0.62 -7.43 16 15 C 0.08 2.02 5.81 71.98 0.42 2.44 16 16 O -0.39 -11.61 9.51 -144.34 -1.37 -12.99 16 17 C 0.10 2.20 6.06 71.24 0.43 2.63 16 18 C -0.11 -2.52 5.51 -19.87 -0.11 -2.63 16 19 C -0.11 -2.21 9.70 22.27 0.22 -1.99 16 20 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 21 C -0.12 -2.22 10.05 22.27 0.22 -2.00 16 22 C -0.13 -2.83 10.05 22.27 0.22 -2.61 16 23 C -0.12 -2.93 9.70 22.27 0.22 -2.71 16 24 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 25 H -0.03 -1.65 8.08 -2.39 -0.02 -1.67 16 26 H 0.05 2.78 4.52 -2.38 -0.01 2.77 16 27 H 0.14 3.03 8.14 -2.39 -0.02 3.01 16 28 H 0.10 3.37 7.73 -2.39 -0.02 3.35 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.26 8.09 -2.39 -0.02 1.24 16 32 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 33 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 37 H 0.12 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -72.88 335.02 3.37 -69.51 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.05 Total: 9.48 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 3.44 Total: -29.63 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.28 Total: -56.20 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -2.80 Total: -33.66 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 35 Polarization: -6.81 SS G_CDS: -0.62 Total: -7.43 kcal Total: -72.88 3.37 -69.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622098.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.582 kcal (2) G-P(sol) polarization free energy of solvation -72.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds