Wall clock time and date at job start Tue Mar 31 2020 14:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00147 * 2 1 4 4 H 1.48500 * 109.46953 * 240.00319 * 3 2 1 5 5 H 1.48504 * 109.47209 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46971 * 120.00223 * 3 2 1 7 7 C 1.37877 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99760 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99827 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.46849 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00172 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46936 * 330.00688 * 11 10 9 13 13 C 1.52994 * 109.46943 * 89.99962 * 11 10 9 14 14 Br 1.96605 * 109.47311 * 295.00380 * 13 11 10 15 15 C 1.52991 * 109.47593 * 210.00402 * 11 10 9 16 16 O 1.42903 * 109.47131 * 295.00085 * 15 11 10 17 17 C 1.42899 * 114.00342 * 180.02562 * 16 15 11 18 18 C 1.50701 * 109.47103 * 180.02562 * 17 16 15 19 19 C 1.38235 * 119.99808 * 89.99842 * 18 17 16 20 20 C 1.38243 * 119.99602 * 179.97438 * 19 18 17 21 21 C 1.38232 * 120.00069 * 0.09581 * 20 19 18 22 22 C 1.38234 * 119.99866 * 359.86117 * 21 20 19 23 23 C 1.38230 * 119.99865 * 269.97588 * 18 17 16 24 24 H 0.97000 * 119.99681 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47162 * 60.00282 * 9 7 2 26 26 H 1.09001 * 109.47102 * 299.99787 * 9 7 2 27 27 H 1.08998 * 109.47080 * 55.00230 * 13 11 10 28 28 H 1.08998 * 109.47597 * 175.00483 * 13 11 10 29 29 H 1.08999 * 109.47303 * 175.00292 * 15 11 10 30 30 H 1.08994 * 109.47466 * 54.99748 * 15 11 10 31 31 H 1.08993 * 109.47528 * 59.99500 * 17 16 15 32 32 H 1.09001 * 109.46686 * 299.99411 * 17 16 15 33 33 H 1.08000 * 120.00616 * 359.70324 * 19 18 17 34 34 H 1.08001 * 119.99556 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.99666 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.99729 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.00371 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.5650 -4.8754 0.0000 12 1 0.6054 -4.8205 0.5141 13 6 1.3452 -5.3362 -1.4422 14 35 0.0520 -4.1444 -2.3212 15 6 2.4736 -5.8729 0.7213 16 8 3.6867 -6.0324 -0.0170 17 6 4.6104 -6.9489 0.5736 18 6 5.8467 -7.0384 -0.2835 19 6 6.9080 -6.1821 -0.0572 20 6 8.0423 -6.2646 -0.8431 21 6 8.1144 -7.2020 -1.8565 22 6 7.0534 -8.0588 -2.0821 23 6 5.9195 -7.9771 -1.2956 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.2919 -5.3060 -1.9815 28 1 0.9588 -6.3554 -1.4432 29 1 1.9670 -6.8348 0.7999 30 1 2.7023 -5.5001 1.7196 31 1 4.1480 -7.9330 0.6489 32 1 4.8834 -6.5987 1.5690 33 1 6.8494 -5.4457 0.7307 34 1 8.8714 -5.5953 -0.6666 35 1 9.0004 -7.2661 -2.4707 36 1 7.1099 -8.7915 -2.8736 37 1 5.0903 -8.6460 -1.4724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622099.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:48 Heat of formation + Delta-G solvation = -67.445670 kcal Electronic energy + Delta-G solvation = -19570.463718 eV Core-core repulsion = 16359.292380 eV Total energy + Delta-G solvation = -3211.171338 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.43874 -38.13426 -36.54814 -32.95339 -32.15755 -31.39213 -30.97584 -29.41522 -26.83935 -26.13069 -25.08617 -22.66008 -22.32915 -21.38296 -20.72140 -17.09426 -16.73799 -16.35504 -16.05933 -15.51192 -15.33820 -14.73262 -14.64687 -14.23748 -13.99803 -13.47878 -13.29819 -12.82705 -12.76107 -12.30923 -12.21313 -11.93484 -11.53015 -11.21100 -11.10502 -10.95675 -10.78142 -10.73622 -10.46018 -10.01622 -9.78234 -9.54810 -9.26140 -8.98945 -8.94435 -8.89938 -8.57909 -7.68042 -5.99205 -3.98585 1.19235 1.33306 2.22747 3.37950 3.40428 3.44462 3.50781 4.09571 4.39040 4.72482 4.74232 4.77921 4.92131 4.99853 5.03081 5.17277 5.26871 5.32577 5.36961 5.37344 5.48311 5.57015 5.60135 5.82698 5.88462 5.95968 5.98146 6.18878 6.35571 6.41828 6.53521 6.90233 7.23970 7.30239 7.67455 7.88446 8.27683 8.64327 9.11345 9.63225 11.11835 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011392 B = 0.004008 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.281814 B = 6984.517635 C = 8504.521250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.165 3.835 10 O -0.372 6.372 11 C 0.092 3.908 12 H 0.076 0.924 13 C -0.094 4.094 14 Br -0.149 7.149 15 C 0.069 3.931 16 O -0.365 6.365 17 C 0.100 3.900 18 C -0.085 4.085 19 C -0.095 4.095 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.127 4.127 23 C -0.101 4.101 24 H 0.262 0.738 25 H 0.049 0.951 26 H -0.002 1.002 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.794 -18.350 -1.761 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.091 3.909 10 O -0.292 6.292 11 C 0.032 3.968 12 H 0.093 0.907 13 C -0.210 4.210 14 Br -0.067 7.067 15 C -0.008 4.008 16 O -0.284 6.284 17 C 0.023 3.977 18 C -0.086 4.086 19 C -0.113 4.113 20 C -0.142 4.142 21 C -0.136 4.136 22 C -0.145 4.145 23 C -0.119 4.119 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.016 0.984 27 H 0.127 0.873 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.421 -17.685 -2.245 19.310 hybrid contribution 0.314 0.521 0.397 0.727 sum 7.734 -17.164 -1.848 18.917 Atomic orbital electron populations 1.69963 1.05929 1.26886 1.50841 1.24871 0.94906 0.99048 0.95483 0.86491 0.79386 0.82407 0.78744 1.20091 1.21254 1.20196 1.20981 0.93808 0.89485 1.50429 0.91972 1.20965 0.89369 0.83072 0.97482 1.88023 1.34998 1.11778 1.94369 1.21986 0.95506 0.87332 0.91995 0.90669 1.25343 0.98914 0.97458 0.99329 1.97349 1.60241 1.67818 1.81339 1.22690 0.85325 0.97105 0.95701 1.88088 1.27649 1.63571 1.49120 1.21289 0.88083 0.93150 0.95134 1.19628 0.94751 0.96712 0.97462 1.21146 0.92996 0.97525 0.99603 1.21167 0.98236 0.98766 0.95982 1.21175 0.98717 0.95863 0.97831 1.21116 0.93886 0.99737 0.99723 1.21045 0.97795 0.98408 0.94628 0.92845 0.93306 0.98435 0.87275 0.88975 0.92634 0.91943 0.92829 0.92462 0.85683 0.85938 0.86186 0.86100 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -15.20 9.43 -34.44 -0.32 -15.52 16 8 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.17 4.51 5.26 36.01 0.19 4.70 16 10 O -0.37 -8.92 9.92 -40.08 -0.40 -9.32 16 11 C 0.09 1.65 2.76 -26.74 -0.07 1.58 16 12 H 0.08 1.32 7.79 -51.93 -0.40 0.91 16 13 C -0.09 -1.53 6.00 37.15 0.22 -1.31 16 14 Br -0.15 -2.83 30.47 -68.01 -2.07 -4.90 16 15 C 0.07 0.99 5.81 37.15 0.22 1.21 16 16 O -0.37 -5.63 9.51 -40.08 -0.38 -6.01 16 17 C 0.10 1.19 6.06 36.01 0.22 1.41 16 18 C -0.09 -1.05 5.51 -104.63 -0.58 -1.63 16 19 C -0.09 -1.15 9.70 -39.58 -0.38 -1.54 16 20 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 21 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 22 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 23 C -0.10 -1.11 9.70 -39.59 -0.38 -1.49 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.05 1.33 4.52 -51.93 -0.23 1.10 16 26 H 0.00 -0.06 8.08 -51.93 -0.42 -0.48 16 27 H 0.11 1.88 7.73 -51.93 -0.40 1.48 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 335.01 15.07 5.05 5.05 Total: -1.00 -33.25 335.01 -9.50 -42.75 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -5.23 Total: -2.51 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -2.19 Total: -15.97 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.74 Total: -26.41 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.78 Total: -15.33 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 35 Polarization: -2.83 SS G_CDS: -2.07 Total: -4.90 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.25 -9.50 -42.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622099.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.698 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds