Wall clock time and date at job start Tue Mar 31 2020 14:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00147 * 2 1 4 4 H 1.48500 * 109.46953 * 240.00319 * 3 2 1 5 5 H 1.48504 * 109.47209 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46971 * 120.00223 * 3 2 1 7 7 C 1.37877 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99760 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99827 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.46849 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00172 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46936 * 330.00688 * 11 10 9 13 13 C 1.52994 * 109.46943 * 89.99962 * 11 10 9 14 14 Br 1.96605 * 109.47311 * 295.00380 * 13 11 10 15 15 C 1.52991 * 109.47593 * 210.00402 * 11 10 9 16 16 O 1.42903 * 109.47131 * 295.00085 * 15 11 10 17 17 C 1.42899 * 114.00342 * 180.02562 * 16 15 11 18 18 C 1.50701 * 109.47103 * 180.02562 * 17 16 15 19 19 C 1.38235 * 119.99808 * 89.99842 * 18 17 16 20 20 C 1.38243 * 119.99602 * 179.97438 * 19 18 17 21 21 C 1.38232 * 120.00069 * 0.09581 * 20 19 18 22 22 C 1.38234 * 119.99866 * 359.86117 * 21 20 19 23 23 C 1.38230 * 119.99865 * 269.97588 * 18 17 16 24 24 H 0.97000 * 119.99681 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47162 * 60.00282 * 9 7 2 26 26 H 1.09001 * 109.47102 * 299.99787 * 9 7 2 27 27 H 1.08998 * 109.47080 * 55.00230 * 13 11 10 28 28 H 1.08998 * 109.47597 * 175.00483 * 13 11 10 29 29 H 1.08999 * 109.47303 * 175.00292 * 15 11 10 30 30 H 1.08994 * 109.47466 * 54.99748 * 15 11 10 31 31 H 1.08993 * 109.47528 * 59.99500 * 17 16 15 32 32 H 1.09001 * 109.46686 * 299.99411 * 17 16 15 33 33 H 1.08000 * 120.00616 * 359.70324 * 19 18 17 34 34 H 1.08001 * 119.99556 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.99666 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.99729 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.00371 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.5650 -4.8754 0.0000 12 1 0.6054 -4.8205 0.5141 13 6 1.3452 -5.3362 -1.4422 14 35 0.0520 -4.1444 -2.3212 15 6 2.4736 -5.8729 0.7213 16 8 3.6867 -6.0324 -0.0170 17 6 4.6104 -6.9489 0.5736 18 6 5.8467 -7.0384 -0.2835 19 6 6.9080 -6.1821 -0.0572 20 6 8.0423 -6.2646 -0.8431 21 6 8.1144 -7.2020 -1.8565 22 6 7.0534 -8.0588 -2.0821 23 6 5.9195 -7.9771 -1.2956 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.2919 -5.3060 -1.9815 28 1 0.9588 -6.3554 -1.4432 29 1 1.9670 -6.8348 0.7999 30 1 2.7023 -5.5001 1.7196 31 1 4.1480 -7.9330 0.6489 32 1 4.8834 -6.5987 1.5690 33 1 6.8494 -5.4457 0.7307 34 1 8.8714 -5.5953 -0.6666 35 1 9.0004 -7.2661 -2.4707 36 1 7.1099 -8.7915 -2.8736 37 1 5.0903 -8.6460 -1.4724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622099.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:48 Heat of formation + Delta-G solvation = -87.022291 kcal Electronic energy + Delta-G solvation = -19571.312624 eV Core-core repulsion = 16359.292380 eV Total energy + Delta-G solvation = -3212.020244 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.30882 -39.44856 -37.96879 -34.97677 -33.53943 -32.58060 -31.77059 -30.83715 -28.91053 -27.15970 -26.21702 -24.47430 -23.46145 -22.23739 -22.10171 -18.57896 -18.17805 -17.75257 -17.18296 -16.81007 -16.54885 -16.21417 -16.08942 -15.61435 -15.27523 -14.69479 -14.26287 -14.13360 -14.03810 -13.69889 -13.46293 -13.19061 -13.01606 -12.82067 -12.70770 -12.51968 -12.22252 -11.89246 -11.85906 -11.73108 -11.58353 -11.01049 -10.73847 -10.68553 -10.52907 -9.80379 -9.73905 -9.50534 -8.23049 -6.31581 0.36368 0.51757 0.87754 1.39076 1.43311 1.51193 2.37351 2.59931 3.09949 3.13206 3.17396 3.66562 3.86253 3.94485 4.10712 4.15865 4.17880 4.28952 4.35319 4.38059 4.48474 4.59753 4.64147 4.68134 4.79469 4.82461 5.09845 5.10244 5.17296 5.52282 5.56401 5.60843 5.62204 5.69909 6.09293 6.11749 6.25473 6.63487 6.91967 7.36495 8.87816 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011392 B = 0.004008 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.281814 B = 6984.517635 C = 8504.521250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.542 4.542 8 H 0.051 0.949 9 C 0.178 3.822 10 O -0.394 6.394 11 C 0.078 3.922 12 H 0.078 0.922 13 C -0.080 4.080 14 Br -0.179 7.179 15 C 0.075 3.925 16 O -0.393 6.393 17 C 0.098 3.902 18 C -0.106 4.106 19 C -0.120 4.120 20 C -0.135 4.135 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.110 4.110 24 H 0.267 0.733 25 H 0.050 0.950 26 H -0.028 1.028 27 H 0.101 0.899 28 H 0.136 0.864 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.118 0.882 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.693 -19.570 -2.196 21.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.794 3.206 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.069 0.931 9 C 0.103 3.897 10 O -0.314 6.314 11 C 0.019 3.981 12 H 0.095 0.905 13 C -0.195 4.195 14 Br -0.099 7.099 15 C -0.002 4.002 16 O -0.313 6.313 17 C 0.023 3.977 18 C -0.106 4.106 19 C -0.138 4.138 20 C -0.153 4.153 21 C -0.140 4.140 22 C -0.149 4.149 23 C -0.128 4.128 24 H 0.076 0.924 25 H 0.068 0.932 26 H -0.010 1.010 27 H 0.119 0.881 28 H 0.155 0.845 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.328 -18.934 -2.673 20.857 hybrid contribution 0.090 0.768 0.537 0.941 sum 8.418 -18.166 -2.136 20.136 Atomic orbital electron populations 1.70065 1.07373 1.28139 1.50884 1.25765 0.95855 1.02669 0.94472 0.85435 0.78298 0.77784 0.79118 1.19469 1.19980 1.19247 1.21336 0.93589 0.91469 1.51647 0.93095 1.20639 0.89198 0.83722 0.96125 1.87958 1.35249 1.13521 1.94668 1.22405 0.96570 0.85469 0.93680 0.90459 1.25379 0.97922 0.98724 0.97517 1.97344 1.61353 1.69300 1.81872 1.22665 0.85120 0.97945 0.94464 1.88037 1.28391 1.64948 1.49930 1.21450 0.87615 0.93740 0.94934 1.19821 0.94912 0.97471 0.98429 1.21308 0.94070 0.98090 1.00317 1.21435 0.98301 0.99423 0.96124 1.21538 0.99692 0.95218 0.97567 1.21496 0.93420 0.99987 0.99952 1.21326 0.98787 0.98355 0.94285 0.92405 0.93236 1.01028 0.88081 0.84548 0.88008 0.92380 0.90042 0.92326 0.86364 0.84549 0.83743 0.83576 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 2 C 0.01 0.64 5.46 84.65 0.46 1.10 16 3 Si 0.97 45.88 29.54 68.60 2.03 47.90 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.54 -33.13 9.43 25.60 0.24 -32.89 16 8 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 9 C 0.18 9.98 5.26 71.24 0.37 10.36 16 10 O -0.39 -19.24 9.92 -144.34 -1.43 -20.67 16 11 C 0.08 2.74 2.76 30.59 0.08 2.83 16 12 H 0.08 2.68 7.79 -2.39 -0.02 2.66 16 13 C -0.08 -2.49 6.00 71.98 0.43 -2.06 16 14 Br -0.18 -6.81 30.47 -20.37 -0.62 -7.43 16 15 C 0.08 2.02 5.81 71.98 0.42 2.44 16 16 O -0.39 -11.61 9.51 -144.34 -1.37 -12.98 16 17 C 0.10 2.20 6.06 71.24 0.43 2.63 16 18 C -0.11 -2.52 5.51 -19.87 -0.11 -2.63 16 19 C -0.12 -2.93 9.70 22.27 0.22 -2.71 16 20 C -0.13 -2.83 10.05 22.27 0.22 -2.60 16 21 C -0.12 -2.22 10.05 22.27 0.22 -2.00 16 22 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 23 C -0.11 -2.21 9.70 22.27 0.22 -1.99 16 24 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 25 H 0.05 2.78 4.52 -2.39 -0.01 2.77 16 26 H -0.03 -1.66 8.08 -2.39 -0.02 -1.68 16 27 H 0.10 3.37 7.73 -2.39 -0.02 3.35 16 28 H 0.14 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 32 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 33 H 0.12 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -72.83 335.01 3.37 -69.46 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 1.05 Total: 9.59 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 3.44 Total: -29.63 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.28 Total: -56.23 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -2.80 Total: -33.66 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 35 Polarization: -6.81 SS G_CDS: -0.62 Total: -7.43 kcal Total: -72.83 3.37 -69.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622099.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.563 kcal (2) G-P(sol) polarization free energy of solvation -72.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds